Wall clock time and date at job start Tue Mar 31 2020 17:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47052 * 2 1 4 4 C 1.50696 * 109.47314 * 119.99813 * 2 1 3 5 5 H 1.07998 * 120.00468 * 120.00278 * 4 2 1 6 6 C 1.37885 * 120.00391 * 300.00261 * 4 2 1 7 7 N 1.31518 * 119.99153 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00174 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47487 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47004 * 120.00137 * 8 6 4 11 11 H 1.48496 * 109.47053 * 239.99883 * 8 6 4 12 12 N 1.46495 * 109.47369 * 240.00183 * 2 1 3 13 13 C 1.46501 * 119.99710 * 300.00102 * 12 2 1 14 14 S 1.65595 * 120.00476 * 119.99571 * 12 2 1 15 15 O 1.42104 * 106.40284 * 336.46314 * 14 12 2 16 16 O 1.42092 * 106.40539 * 203.54080 * 14 12 2 17 17 N 1.65599 * 107.21693 * 90.00024 * 14 12 2 18 18 C 1.50168 * 120.53904 * 90.00398 * 17 14 12 19 19 C 1.46235 * 107.53735 * 109.56649 * 18 17 14 20 20 C 1.52523 * 114.27784 * 58.40457 * 19 18 17 21 21 C 1.50119 * 105.42254 * 270.59747 * 20 19 18 22 22 H 1.09008 * 109.21178 * 337.34333 * 21 20 19 23 23 N 1.46900 * 109.21583 * 217.98082 * 21 20 19 24 24 C 1.46899 * 110.99550 * 309.53544 * 23 21 20 25 25 C 1.46896 * 110.99748 * 73.48526 * 23 21 20 26 26 C 1.54854 * 110.81399 * 97.68026 * 21 20 19 27 27 C 1.43437 * 120.54025 * 269.98233 * 17 14 12 28 28 H 1.09004 * 109.47474 * 299.99699 * 1 2 3 29 29 H 1.09000 * 109.47424 * 60.00168 * 1 2 3 30 30 H 1.08999 * 109.47324 * 180.02562 * 1 2 3 31 31 H 0.97007 * 119.99532 * 179.97438 * 7 6 4 32 32 H 1.09001 * 109.47081 * 269.99491 * 13 12 2 33 33 H 1.08995 * 109.47132 * 29.99514 * 13 12 2 34 34 H 1.09001 * 109.47294 * 150.00009 * 13 12 2 35 35 H 1.09001 * 109.84107 * 350.05897 * 18 17 14 36 36 H 1.09007 * 109.90388 * 229.10711 * 18 17 14 37 37 H 1.09009 * 108.52271 * 297.16628 * 19 18 17 38 38 H 1.08999 * 108.40647 * 179.56327 * 19 18 17 39 39 H 1.09006 * 110.25021 * 151.62715 * 20 19 18 40 40 H 1.09000 * 110.36914 * 29.63873 * 20 19 18 41 41 H 1.08997 * 109.47577 * 65.71753 * 24 23 21 42 42 H 1.09004 * 109.46864 * 185.71615 * 24 23 21 43 43 H 1.08996 * 109.47125 * 305.71095 * 24 23 21 44 44 H 1.08998 * 109.46964 * 60.00649 * 25 23 21 45 45 H 1.08998 * 109.47135 * 180.02562 * 25 23 21 46 46 H 1.09004 * 109.47445 * 300.00224 * 25 23 21 47 47 H 1.09000 * 109.35484 * 81.34281 * 26 21 20 48 48 H 1.08999 * 109.35576 * 200.93063 * 26 21 20 49 49 H 1.08996 * 108.15917 * 33.30433 * 27 17 14 50 50 H 1.08995 * 108.16067 * 149.87592 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0079 9 1 3.1465 -2.2869 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5866 4.8160 12 7 2.0183 -0.6905 -1.1961 13 6 1.6644 -2.0931 -1.4280 14 16 2.9703 0.1142 -2.2862 15 8 2.6903 1.4973 -2.1193 16 8 2.8227 -0.5645 -3.5258 17 7 4.5436 -0.1041 -1.8180 18 6 5.3372 -1.2716 -2.3301 19 6 6.3435 -0.7493 -3.2537 20 6 7.2909 0.2738 -2.6357 21 6 6.6294 1.6057 -2.8414 22 1 5.9295 1.5338 -3.6739 23 7 7.6535 2.6106 -3.1565 24 6 8.7481 2.5715 -2.1776 25 6 8.1626 2.4328 -4.5229 26 6 5.8635 2.0421 -1.5682 27 6 5.1708 0.8191 -0.9170 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.7088 1.1615 3.4844 32 1 2.4157 -2.7376 -0.9717 33 1 0.6904 -2.3001 -0.9846 34 1 1.6238 -2.2852 -2.5002 35 1 4.6790 -1.9652 -2.8536 36 1 5.8261 -1.7810 -1.4996 37 1 5.8319 -0.2831 -4.0958 38 1 6.9336 -1.5855 -3.6286 39 1 8.2555 0.2495 -3.1429 40 1 7.4200 0.0770 -1.5714 41 1 9.2758 1.6214 -2.2603 42 1 9.4406 3.3900 -2.3740 43 1 8.3402 2.6742 -1.1721 44 1 7.3418 2.5359 -5.2326 45 1 8.9195 3.1893 -4.7299 46 1 8.6045 1.4411 -4.6198 47 1 6.5640 2.4812 -0.8579 48 1 5.1108 2.7836 -1.8358 49 1 4.4129 1.1866 -0.2252 50 1 5.9166 0.2749 -0.3377 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332023507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:14:50 Heat of formation + Delta-G solvation = -76.709068 kcal Electronic energy + Delta-G solvation = -29969.625368 eV Core-core repulsion = 26158.433803 eV Total energy + Delta-G solvation = -3811.191564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.72146 -38.39115 -37.87694 -37.56479 -36.86724 -34.49018 -33.73333 -32.61829 -30.90479 -28.47437 -27.36629 -27.16335 -26.93046 -26.62694 -23.55797 -22.62315 -22.47705 -20.56142 -19.55283 -18.59483 -18.50341 -18.24825 -17.39320 -16.86689 -16.68872 -16.31865 -16.06993 -15.79737 -15.24303 -15.05003 -14.89333 -14.63412 -14.40424 -14.35086 -13.78353 -13.64721 -13.59846 -13.41453 -13.32747 -13.19995 -13.13284 -13.00485 -12.92268 -12.76863 -12.75208 -12.61543 -12.54953 -12.22990 -12.13243 -12.09162 -11.88421 -11.85856 -11.71654 -11.55889 -11.32098 -11.09787 -10.49140 -10.00196 -9.61481 -9.13678 -8.07025 -6.21973 -0.30853 1.45578 1.48537 1.58465 1.99874 2.46710 2.55884 3.03985 3.21484 3.37178 3.61989 3.76064 4.03757 4.08266 4.15793 4.18999 4.27779 4.29378 4.40422 4.54325 4.61595 4.67696 4.71716 4.72082 4.78492 4.79781 4.84419 4.92374 4.94378 4.97165 5.00696 5.02210 5.08783 5.13578 5.16812 5.17711 5.19040 5.29579 5.37074 5.42193 5.60072 5.67791 5.81268 5.91663 6.11992 6.16522 6.20997 6.31065 6.87668 7.47946 8.97790 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.004469 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.095273 B = 6263.253003 C = 7081.341983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.274 3.726 3 H 0.022 0.978 4 C -0.524 4.524 5 H 0.069 0.931 6 C 0.016 3.984 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.285 1.285 12 N -0.999 5.999 13 C 0.094 3.906 14 S 2.788 3.212 15 O -1.015 7.015 16 O -1.006 7.006 17 N -0.995 5.995 18 C 0.124 3.876 19 C -0.135 4.135 20 C -0.137 4.137 21 C 0.090 3.910 22 H 0.055 0.945 23 N -0.565 5.565 24 C 0.020 3.980 25 C 0.024 3.976 26 C -0.127 4.127 27 C 0.130 3.870 28 H 0.070 0.930 29 H 0.016 0.984 30 H 0.046 0.954 31 H 0.263 0.737 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.093 0.907 48 H 0.043 0.957 49 H 0.047 0.953 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.661 -4.435 -9.213 18.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.563 4.563 5 H 0.087 0.913 6 C -0.183 4.183 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.186 1.186 10 H -0.211 1.211 11 H -0.211 1.211 12 N -0.840 5.840 13 C -0.051 4.051 14 S 2.799 3.201 15 O -0.999 6.999 16 O -0.990 6.990 17 N -0.835 5.835 18 C 0.001 3.999 19 C -0.174 4.174 20 C -0.175 4.175 21 C -0.019 4.019 22 H 0.073 0.927 23 N -0.288 5.288 24 C -0.128 4.128 25 C -0.124 4.124 26 C -0.167 4.167 27 C 0.003 3.997 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.067 0.933 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.097 0.903 46 H 0.055 0.945 47 H 0.112 0.888 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 15.054 -3.371 -9.834 18.294 hybrid contribution 0.060 -0.801 1.177 1.425 sum 15.114 -4.172 -8.657 17.910 Atomic orbital electron populations 1.21971 0.98178 1.00074 0.99877 1.18381 0.91765 0.91285 0.81603 0.95985 1.21616 1.31364 1.12907 0.90452 0.91327 1.25690 0.95221 0.95575 1.01825 1.70036 1.37544 1.24063 1.24192 0.85495 0.77995 0.78677 0.79331 1.18638 1.21072 1.21121 1.57670 1.65275 1.22480 1.38598 1.21437 1.02258 0.80487 1.00919 1.01485 0.73259 0.72465 0.72932 1.93529 1.84749 1.34520 1.87091 1.93482 1.86651 1.76328 1.42580 1.57948 1.28580 1.35294 1.61720 1.21054 0.93881 0.86407 0.98535 1.20749 0.97460 1.00583 0.98633 1.21665 0.98516 0.94615 1.02717 1.21709 0.92990 0.90180 0.96982 0.92684 1.62123 1.13421 1.49586 1.03710 1.22465 0.93094 1.01122 0.96129 1.22397 1.00218 1.00725 0.89070 1.22727 0.99099 0.97155 0.97705 1.20684 0.98117 0.90373 0.90553 0.91101 0.96501 0.93531 0.92817 0.92157 0.90900 0.90678 0.89229 0.88308 0.93327 0.88592 0.89929 0.89815 0.94126 0.90836 0.91356 0.92461 0.90333 0.94453 0.88850 0.93757 0.93487 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.88 8.95 71.98 0.64 -6.24 16 2 C 0.27 13.55 2.62 44.24 0.12 13.67 16 3 H 0.02 1.26 6.91 -2.38 -0.02 1.24 16 4 C -0.52 -26.40 8.37 25.60 0.21 -26.18 16 5 H 0.07 3.31 7.65 -2.91 -0.02 3.29 16 6 C 0.02 0.85 5.30 84.66 0.45 1.30 16 7 N -0.92 -50.91 11.32 21.45 0.24 -50.66 16 8 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 9 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 N -1.00 -41.49 3.12 -520.46 -1.62 -43.11 16 13 C 0.09 3.23 9.90 127.77 1.27 4.49 16 14 S 2.79 111.86 6.05 -56.49 -0.34 111.52 16 15 O -1.01 -48.72 15.83 -128.00 -2.03 -50.74 16 16 O -1.01 -40.57 15.55 -128.00 -1.99 -42.56 16 17 N -1.00 -31.33 2.94 -521.24 -1.53 -32.86 16 18 C 0.12 2.84 5.93 83.58 0.50 3.34 16 19 C -0.14 -2.67 5.20 28.35 0.15 -2.52 16 20 C -0.14 -2.56 3.98 29.51 0.12 -2.44 16 21 C 0.09 2.21 1.96 44.62 0.09 2.29 16 22 H 0.05 1.60 6.66 -2.38 -0.02 1.59 16 23 N -0.56 -12.41 4.93 -925.04 -4.56 -16.97 16 24 C 0.02 0.33 8.86 127.69 1.13 1.46 16 25 C 0.02 0.43 9.34 127.69 1.19 1.62 16 26 C -0.13 -3.65 5.94 31.88 0.19 -3.46 16 27 C 0.13 4.03 4.75 87.60 0.42 4.44 16 28 H 0.07 3.78 6.07 -2.39 -0.01 3.76 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 2.08 6.66 -2.39 -0.02 2.06 16 31 H 0.26 13.86 8.31 -92.70 -0.77 13.09 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.50 6.43 -2.39 -0.02 2.48 16 34 H 0.07 2.32 7.02 -2.39 -0.02 2.30 16 35 H 0.09 2.05 7.30 -2.39 -0.02 2.03 16 36 H 0.10 1.82 8.13 -2.38 -0.02 1.80 16 37 H 0.05 1.16 6.93 -2.38 -0.02 1.14 16 38 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.30 5.35 -2.38 -0.01 1.29 16 40 H 0.08 1.48 6.30 -2.39 -0.02 1.47 16 41 H 0.04 0.59 6.50 -2.39 -0.02 0.57 16 42 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.07 1.20 6.25 -2.39 -0.01 1.19 16 44 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.04 0.58 6.69 -2.38 -0.02 0.56 16 47 H 0.09 2.33 6.16 -2.39 -0.01 2.31 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.05 1.79 7.81 -2.39 -0.02 1.77 16 50 H 0.10 2.39 6.90 -2.39 -0.02 2.37 16 Total: -1.00 -65.91 378.63 -2.42 -68.33 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.92 Total: 22.40 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 6.46 Total: -8.23 kcal Atomic # 7 Polarization: -136.13 SS G_CDS: -7.47 Total: -143.61 kcal Atomic # 8 Polarization: -89.28 SS G_CDS: -4.02 Total: -93.30 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Atomic # 16 Polarization: 111.86 SS G_CDS: -0.34 Total: 111.52 kcal Total: -65.91 -2.42 -68.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332023507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.381 kcal (2) G-P(sol) polarization free energy of solvation -65.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds