Wall clock time and date at job start Tue Mar 31 2020 17:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47315 * 2 1 4 4 C 1.50692 * 109.47287 * 120.00365 * 2 1 3 5 5 H 1.08003 * 120.00713 * 119.99881 * 4 2 1 6 6 C 1.37879 * 119.99983 * 299.99972 * 4 2 1 7 7 N 1.31522 * 120.00105 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00030 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.46953 * 90.00237 * 8 6 4 10 10 H 1.48498 * 109.47024 * 210.00068 * 8 6 4 11 11 H 1.48494 * 109.46977 * 330.00221 * 8 6 4 12 12 N 1.46505 * 109.46824 * 240.00360 * 2 1 3 13 13 C 1.46501 * 119.99831 * 299.99672 * 12 2 1 14 14 S 1.65593 * 119.99944 * 119.99723 * 12 2 1 15 15 O 1.42103 * 106.40295 * 203.53866 * 14 12 2 16 16 O 1.42092 * 106.40337 * 336.46070 * 14 12 2 17 17 N 1.65609 * 107.21660 * 90.00071 * 14 12 2 18 18 C 1.46495 * 119.99894 * 277.28683 * 17 14 12 19 19 C 1.46499 * 119.99812 * 97.28602 * 17 14 12 20 20 C 1.53003 * 109.46679 * 96.73119 * 19 17 14 21 21 N 1.46907 * 112.84491 * 166.22666 * 20 19 17 22 22 C 1.46898 * 111.00167 * 295.50525 * 21 20 19 23 23 C 1.46897 * 111.00129 * 59.46037 * 21 20 19 24 24 C 1.53773 * 113.61736 * 35.03142 * 20 19 17 25 25 C 1.53961 * 87.01902 * 220.04749 * 24 20 19 26 26 C 1.53774 * 87.11000 * 25.36152 * 25 24 20 27 27 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46779 * 299.99948 * 1 2 3 29 29 H 1.08996 * 109.47623 * 59.99463 * 1 2 3 30 30 H 0.97004 * 119.99845 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46769 * 89.99812 * 13 12 2 32 32 H 1.08996 * 109.47365 * 210.00083 * 13 12 2 33 33 H 1.09003 * 109.47198 * 330.00362 * 13 12 2 34 34 H 1.09003 * 109.47071 * 84.82850 * 18 17 14 35 35 H 1.08998 * 109.47268 * 204.82942 * 18 17 14 36 36 H 1.08999 * 109.47224 * 324.83372 * 18 17 14 37 37 H 1.09005 * 109.46897 * 216.72536 * 19 17 14 38 38 H 1.09001 * 109.47345 * 336.72980 * 19 17 14 39 39 H 1.08993 * 109.47243 * 65.74025 * 22 21 20 40 40 H 1.09003 * 109.46964 * 185.74776 * 22 21 20 41 41 H 1.09003 * 109.46645 * 305.73861 * 22 21 20 42 42 H 1.09002 * 109.47274 * 59.99394 * 23 21 20 43 43 H 1.08996 * 109.47163 * 179.97438 * 23 21 20 44 44 H 1.09005 * 109.46956 * 299.99799 * 23 21 20 45 45 H 1.08996 * 113.61688 * 334.56609 * 24 20 19 46 46 H 1.09002 * 113.61766 * 105.46669 * 24 20 19 47 47 H 1.09004 * 113.53406 * 270.80571 * 25 24 20 48 48 H 1.09001 * 113.74025 * 139.94566 * 25 24 20 49 49 H 1.08997 * 113.61714 * 220.09179 * 26 25 24 50 50 H 1.09005 * 113.69294 * 89.20067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9773 1.9952 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 16 2.9702 0.1143 -2.2863 15 8 2.8226 -0.5644 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1235 0.7488 -0.7778 19 6 5.3557 -1.1505 -2.4444 20 6 6.1969 -0.5396 -3.5670 21 7 7.2655 -1.4348 -4.0307 22 6 8.2467 -1.6794 -2.9653 23 6 6.7116 -2.6979 -4.5363 24 6 6.6775 0.8902 -3.2684 25 6 6.3777 1.2129 -4.7437 26 6 5.3588 0.0617 -4.7075 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9041 -0.5276 4.4375 31 1 0.7374 -2.1443 -1.9994 32 1 2.4627 -2.5819 -1.9865 33 1 1.5295 -2.5969 -0.4709 34 1 4.8816 0.3405 0.2035 35 1 6.2061 0.7853 -0.8994 36 1 4.7141 1.7554 -0.8633 37 1 6.0139 -1.5951 -1.6979 38 1 4.7024 -1.9193 -2.8570 39 1 7.7725 -2.2323 -2.1545 40 1 9.0784 -2.2606 -3.3637 41 1 8.6175 -0.7267 -2.5872 42 1 6.0410 -2.4924 -5.3708 43 1 7.5239 -3.3417 -4.8735 44 1 6.1587 -3.1967 -3.7403 45 1 6.0404 1.4273 -2.5658 46 1 7.7356 0.9510 -3.0135 47 1 7.2209 1.0291 -5.4095 48 1 5.9245 2.1926 -4.8952 49 1 5.3538 -0.5455 -5.6126 50 1 4.3599 0.3704 -4.3993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332047654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:41 Heat of formation + Delta-G solvation = -15.633294 kcal Electronic energy + Delta-G solvation = -30305.668791 eV Core-core repulsion = 26497.125671 eV Total energy + Delta-G solvation = -3808.543120 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29863 -36.91580 -36.42365 -35.61456 -35.38680 -34.71798 -32.57290 -30.07795 -28.74637 -27.98957 -25.82121 -25.76239 -25.10296 -24.87844 -23.87610 -21.94659 -20.91017 -18.78508 -18.10078 -17.47565 -17.11136 -16.69714 -16.18878 -15.99151 -15.36684 -14.94730 -14.76974 -14.52798 -13.97801 -13.76685 -13.58946 -13.47750 -13.28870 -13.14005 -12.91622 -12.46744 -12.38841 -12.21595 -12.08318 -12.02381 -11.95693 -11.87948 -11.78884 -11.57323 -11.41510 -11.25471 -11.16640 -11.02493 -10.93108 -10.68642 -10.50264 -10.34250 -10.18872 -9.95733 -9.64379 -9.49675 -9.16539 -8.71331 -8.20650 -8.07251 -6.22467 -4.23935 1.05679 3.19154 3.27092 3.32119 3.34390 3.74989 3.95233 4.28289 4.43622 4.70963 4.81041 4.91894 4.95780 5.01889 5.06744 5.09669 5.27223 5.41048 5.43205 5.45769 5.52221 5.60082 5.65091 5.74204 5.79625 5.86483 5.91300 5.94457 6.02471 6.03805 6.09805 6.14623 6.18093 6.23724 6.27018 6.35034 6.41212 6.42203 6.49408 6.59538 6.70022 6.85069 6.92295 7.10321 7.23971 7.32584 7.58042 8.36741 8.79735 9.38532 10.89649 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004359 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.888187 B = 6422.036899 C = 6664.914244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.238 3.762 3 H 0.056 0.944 4 C -0.527 4.527 5 H 0.082 0.918 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.875 3.125 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.985 5.985 13 C 0.106 3.894 14 S 2.780 3.220 15 O -0.985 6.985 16 O -0.981 6.981 17 N -1.000 6.000 18 C 0.080 3.920 19 C 0.112 3.888 20 C 0.064 3.936 21 N -0.516 5.516 22 C 0.019 3.981 23 C 0.019 3.981 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.128 4.128 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.034 0.966 30 H 0.266 0.734 31 H 0.044 0.956 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.030 0.970 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.030 0.970 45 H 0.099 0.901 46 H 0.069 0.931 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.071 0.929 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.159 -1.138 -12.658 15.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.133 3.867 3 H 0.073 0.927 4 C -0.566 4.566 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.705 3.295 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.826 5.826 13 C -0.041 4.041 14 S 2.790 3.210 15 O -0.969 6.969 16 O -0.965 6.965 17 N -0.839 5.839 18 C -0.065 4.065 19 C -0.016 4.016 20 C -0.028 4.028 21 N -0.239 5.239 22 C -0.129 4.129 23 C -0.129 4.129 24 C -0.174 4.174 25 C -0.171 4.171 26 C -0.166 4.166 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.049 0.951 45 H 0.117 0.883 46 H 0.088 0.912 47 H 0.101 0.899 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.135 -0.418 -13.591 16.381 hybrid contribution -0.886 -0.077 1.425 1.680 sum 8.249 -0.495 -12.166 14.707 Atomic orbital electron populations 1.22417 0.98809 1.01376 0.99174 1.19092 0.91036 0.93324 0.83244 0.92675 1.21182 1.32792 1.14389 0.88255 0.89979 1.24884 0.95489 0.96533 0.95723 1.69875 1.45055 1.40066 0.98000 0.87037 0.80897 0.83960 0.77592 1.20260 1.22089 1.18593 1.57525 1.64604 1.21599 1.38920 1.21235 0.98987 0.81612 1.02233 1.01971 0.72397 0.73486 0.73162 1.93540 1.85808 1.76137 1.41406 1.93565 1.83835 1.32272 1.86835 1.57724 1.29736 1.45100 1.51292 1.21709 0.99443 0.94377 0.90952 1.21565 0.95092 0.89883 0.95067 1.22690 0.91912 0.93164 0.95043 1.62110 1.13645 1.13799 1.34328 1.22418 0.95547 1.01685 0.93246 1.22406 0.99847 0.90521 1.00106 1.23334 1.01483 0.94768 0.97825 1.22761 0.99358 0.98067 0.96888 1.23122 0.97847 0.97490 0.98129 0.92258 0.93273 0.94739 0.92409 0.93709 0.93106 0.89725 0.91048 0.90879 0.90569 0.90676 0.89992 0.95142 0.91400 0.91149 0.90970 0.91430 0.95146 0.88279 0.91249 0.89881 0.92020 0.90993 0.89554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 8.67 37.16 0.32 -3.08 16 2 C 0.24 5.42 2.21 -69.08 -0.15 5.27 16 3 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.53 -13.48 8.57 -34.44 -0.30 -13.78 16 5 H 0.08 2.25 7.58 -52.48 -0.40 1.85 16 6 C 0.08 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -25.46 13.96 55.43 0.77 -24.69 16 8 Si 0.88 20.83 24.37 -169.99 -4.14 16.68 16 9 H -0.28 -6.39 6.87 56.52 0.39 -6.00 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.26 -6.09 6.53 56.52 0.37 -5.72 16 12 N -0.99 -19.62 3.12 -115.85 -0.36 -19.98 16 13 C 0.11 1.83 9.28 59.85 0.56 2.38 16 14 S 2.78 52.46 5.20 -107.50 -0.56 51.90 16 15 O -0.98 -18.60 13.39 -57.17 -0.77 -19.37 16 16 O -0.98 -21.10 15.52 -57.17 -0.89 -21.99 16 17 N -1.00 -15.87 2.54 -121.76 -0.31 -16.18 16 18 C 0.08 1.20 8.76 59.84 0.52 1.72 16 19 C 0.11 1.55 4.26 -4.04 -0.02 1.53 16 20 C 0.06 0.81 0.42 -130.79 -0.06 0.75 16 21 N -0.52 -5.73 4.81 -234.46 -1.13 -6.86 16 22 C 0.02 0.18 9.15 60.06 0.55 0.73 16 23 C 0.02 0.20 9.17 60.06 0.55 0.75 16 24 C -0.14 -1.67 6.02 -25.83 -0.16 -1.83 16 25 C -0.13 -1.64 8.00 -25.83 -0.21 -1.84 16 26 C -0.13 -1.79 6.81 -25.92 -0.18 -1.97 16 27 H 0.06 1.19 7.67 -51.93 -0.40 0.79 16 28 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 33 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.88 6.42 -51.93 -0.33 0.54 16 36 H 0.08 1.17 7.21 -51.93 -0.37 0.79 16 37 H 0.07 0.96 6.43 -51.93 -0.33 0.63 16 38 H 0.08 1.16 6.68 -51.93 -0.35 0.81 16 39 H 0.03 0.30 6.72 -51.93 -0.35 -0.05 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 42 H 0.07 0.75 7.00 -51.93 -0.36 0.39 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.03 0.31 6.91 -51.93 -0.36 -0.05 16 45 H 0.10 1.29 4.62 -51.93 -0.24 1.05 16 46 H 0.07 0.76 6.70 -51.93 -0.35 0.41 16 47 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.07 0.96 7.08 -51.93 -0.37 0.60 16 50 H 0.09 1.40 4.47 -51.93 -0.23 1.17 16 LS Contribution 371.57 15.07 5.60 5.60 Total: -1.00 -29.98 371.57 -8.60 -38.58 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -8.17 Total: 3.68 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 1.35 Total: -7.38 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -1.02 Total: -67.71 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -1.65 Total: -41.36 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.14 Total: 16.68 kcal Atomic # 16 Polarization: 52.46 SS G_CDS: -0.56 Total: 51.90 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.98 -8.60 -38.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332047654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.950 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds