Wall clock time and date at job start Tue Mar 31 2020 17:15:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47315 * 2 1 4 4 C 1.50692 * 109.47287 * 120.00365 * 2 1 3 5 5 H 1.08003 * 120.00713 * 119.99881 * 4 2 1 6 6 C 1.37879 * 119.99983 * 299.99972 * 4 2 1 7 7 N 1.31522 * 120.00105 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00030 * 359.97438 * 6 4 2 9 9 H 1.48493 * 109.46953 * 90.00237 * 8 6 4 10 10 H 1.48498 * 109.47024 * 210.00068 * 8 6 4 11 11 H 1.48494 * 109.46977 * 330.00221 * 8 6 4 12 12 N 1.46505 * 109.46824 * 240.00360 * 2 1 3 13 13 C 1.46501 * 119.99831 * 299.99672 * 12 2 1 14 14 S 1.65593 * 119.99944 * 119.99723 * 12 2 1 15 15 O 1.42103 * 106.40295 * 203.53866 * 14 12 2 16 16 O 1.42092 * 106.40337 * 336.46070 * 14 12 2 17 17 N 1.65609 * 107.21660 * 90.00071 * 14 12 2 18 18 C 1.46495 * 119.99894 * 277.28683 * 17 14 12 19 19 C 1.46499 * 119.99812 * 97.28602 * 17 14 12 20 20 C 1.53003 * 109.46679 * 96.73119 * 19 17 14 21 21 N 1.46907 * 112.84491 * 166.22666 * 20 19 17 22 22 C 1.46898 * 111.00167 * 295.50525 * 21 20 19 23 23 C 1.46897 * 111.00129 * 59.46037 * 21 20 19 24 24 C 1.53773 * 113.61736 * 35.03142 * 20 19 17 25 25 C 1.53961 * 87.01902 * 220.04749 * 24 20 19 26 26 C 1.53774 * 87.11000 * 25.36152 * 25 24 20 27 27 H 1.09002 * 109.47123 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46779 * 299.99948 * 1 2 3 29 29 H 1.08996 * 109.47623 * 59.99463 * 1 2 3 30 30 H 0.97004 * 119.99845 * 179.97438 * 7 6 4 31 31 H 1.09006 * 109.46769 * 89.99812 * 13 12 2 32 32 H 1.08996 * 109.47365 * 210.00083 * 13 12 2 33 33 H 1.09003 * 109.47198 * 330.00362 * 13 12 2 34 34 H 1.09003 * 109.47071 * 84.82850 * 18 17 14 35 35 H 1.08998 * 109.47268 * 204.82942 * 18 17 14 36 36 H 1.08999 * 109.47224 * 324.83372 * 18 17 14 37 37 H 1.09005 * 109.46897 * 216.72536 * 19 17 14 38 38 H 1.09001 * 109.47345 * 336.72980 * 19 17 14 39 39 H 1.08993 * 109.47243 * 65.74025 * 22 21 20 40 40 H 1.09003 * 109.46964 * 185.74776 * 22 21 20 41 41 H 1.09003 * 109.46645 * 305.73861 * 22 21 20 42 42 H 1.09002 * 109.47274 * 59.99394 * 23 21 20 43 43 H 1.08996 * 109.47163 * 179.97438 * 23 21 20 44 44 H 1.09005 * 109.46956 * 299.99799 * 23 21 20 45 45 H 1.08996 * 113.61688 * 334.56609 * 24 20 19 46 46 H 1.09002 * 113.61766 * 105.46669 * 24 20 19 47 47 H 1.09004 * 113.53406 * 270.80571 * 25 24 20 48 48 H 1.09001 * 113.74025 * 139.94566 * 25 24 20 49 49 H 1.08997 * 113.61714 * 220.09179 * 26 25 24 50 50 H 1.09005 * 113.69294 * 89.20067 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5565 8 14 0.6259 1.2798 2.6542 9 1 -0.8019 0.8744 2.6994 10 1 0.9773 1.9952 3.9071 11 1 0.8491 2.1773 1.4924 12 7 2.0183 -0.6906 -1.1963 13 6 1.6644 -2.0932 -1.4281 14 16 2.9702 0.1143 -2.2863 15 8 2.8226 -0.5644 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5437 -0.1042 -1.8181 18 6 5.1235 0.7488 -0.7778 19 6 5.3557 -1.1505 -2.4444 20 6 6.1969 -0.5396 -3.5670 21 7 7.2655 -1.4348 -4.0307 22 6 8.2467 -1.6794 -2.9653 23 6 6.7116 -2.6979 -4.5363 24 6 6.6775 0.8902 -3.2684 25 6 6.3777 1.2129 -4.7437 26 6 5.3588 0.0617 -4.7075 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.9041 -0.5276 4.4375 31 1 0.7374 -2.1443 -1.9994 32 1 2.4627 -2.5819 -1.9865 33 1 1.5295 -2.5969 -0.4709 34 1 4.8816 0.3405 0.2035 35 1 6.2061 0.7853 -0.8994 36 1 4.7141 1.7554 -0.8633 37 1 6.0139 -1.5951 -1.6979 38 1 4.7024 -1.9193 -2.8570 39 1 7.7725 -2.2323 -2.1545 40 1 9.0784 -2.2606 -3.3637 41 1 8.6175 -0.7267 -2.5872 42 1 6.0410 -2.4924 -5.3708 43 1 7.5239 -3.3417 -4.8735 44 1 6.1587 -3.1967 -3.7403 45 1 6.0404 1.4273 -2.5658 46 1 7.7356 0.9510 -3.0135 47 1 7.2209 1.0291 -5.4095 48 1 5.9245 2.1926 -4.8952 49 1 5.3538 -0.5455 -5.6126 50 1 4.3599 0.3704 -4.3993 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332047654.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:41 Heat of formation + Delta-G solvation = -37.290077 kcal Electronic energy + Delta-G solvation = -30306.607900 eV Core-core repulsion = 26497.125671 eV Total energy + Delta-G solvation = -3809.482229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30144 -38.48346 -38.09542 -37.00604 -36.66302 -35.71149 -34.53218 -31.83885 -29.84530 -28.82965 -27.33519 -26.99979 -26.89002 -25.88423 -24.89984 -22.92975 -22.67615 -20.12504 -19.23931 -19.08817 -18.57284 -18.48008 -17.44497 -17.23372 -16.90101 -16.25599 -15.80237 -15.67256 -15.43111 -14.99131 -14.86445 -14.74358 -14.62398 -14.42788 -14.35169 -14.17061 -13.90052 -13.67122 -13.50453 -13.37587 -13.21254 -13.03706 -12.88855 -12.76349 -12.75324 -12.72165 -12.56863 -12.38894 -12.23136 -12.03978 -11.99354 -11.66071 -11.47435 -11.39698 -11.31661 -10.95628 -10.75695 -10.35086 -9.80425 -9.08350 -8.30143 -6.33658 -0.42512 1.30170 1.38977 1.46156 1.85015 2.30685 2.41803 2.91720 3.04585 3.26424 3.42673 3.73753 3.82323 3.89025 3.96480 4.01405 4.25140 4.34113 4.40375 4.45037 4.51516 4.56091 4.56942 4.60948 4.67865 4.71555 4.75689 4.77103 4.83286 4.85645 4.88392 4.95751 4.98648 5.04051 5.04526 5.06328 5.13215 5.17390 5.20013 5.35403 5.44127 5.44545 5.49362 5.55959 5.85196 6.10156 6.17732 6.32862 6.70522 7.31525 8.84952 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018322 B = 0.004359 C = 0.004200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.888187 B = 6422.036899 C = 6664.914244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.240 3.760 3 H 0.043 0.957 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.030 3.970 7 N -0.935 5.935 8 Si 0.922 3.078 9 H -0.263 1.263 10 H -0.295 1.295 11 H -0.255 1.255 12 N -0.994 5.994 13 C 0.101 3.899 14 S 2.789 3.211 15 O -0.986 6.986 16 O -1.009 7.009 17 N -0.995 5.995 18 C 0.082 3.918 19 C 0.108 3.892 20 C 0.070 3.930 21 N -0.517 5.517 22 C 0.017 3.983 23 C 0.017 3.983 24 C -0.137 4.137 25 C -0.127 4.127 26 C -0.140 4.140 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.053 0.947 30 H 0.267 0.733 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.105 0.895 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.027 0.973 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.086 0.914 44 H 0.027 0.973 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.095 0.905 48 H 0.061 0.939 49 H 0.073 0.927 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.997 -1.060 -13.891 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.061 0.939 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.169 4.169 7 N -0.575 5.575 8 Si 0.749 3.251 9 H -0.189 1.189 10 H -0.222 1.222 11 H -0.179 1.179 12 N -0.834 5.834 13 C -0.045 4.045 14 S 2.798 3.202 15 O -0.970 6.970 16 O -0.993 6.993 17 N -0.835 5.835 18 C -0.063 4.063 19 C -0.020 4.020 20 C -0.022 4.022 21 N -0.240 5.240 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.174 4.174 25 C -0.164 4.164 26 C -0.178 4.178 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.105 0.895 44 H 0.045 0.955 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.113 0.887 48 H 0.079 0.921 49 H 0.091 0.909 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.961 -0.356 -14.851 17.886 hybrid contribution -1.048 -0.198 1.721 2.024 sum 8.914 -0.553 -13.130 15.880 Atomic orbital electron populations 1.22388 0.97447 1.02288 0.99811 1.18868 0.92125 0.92485 0.83129 0.93939 1.21292 1.31417 1.13164 0.89407 0.92624 1.25514 0.96833 0.98987 0.95561 1.69985 1.47037 1.41911 0.98517 0.86272 0.80110 0.81163 0.77533 1.18870 1.22231 1.17913 1.57546 1.65385 1.22537 1.37920 1.21385 1.00646 0.80333 1.02107 1.01612 0.72825 0.72778 0.72946 1.93538 1.86143 1.75980 1.41349 1.93523 1.84601 1.33979 1.87193 1.57518 1.28840 1.45728 1.51459 1.21751 1.01375 0.93609 0.89589 1.21759 0.95068 0.89329 0.95810 1.22596 0.91981 0.93719 0.93866 1.62152 1.13066 1.14066 1.34702 1.22499 0.95496 1.02208 0.92824 1.22466 1.00490 0.90376 0.99766 1.23319 1.02299 0.94172 0.97608 1.22748 0.99089 0.97393 0.97184 1.23117 0.97190 0.98710 0.98741 0.91298 0.93850 0.92833 0.92403 0.92005 0.91161 0.90977 0.93100 0.87620 0.91167 0.89461 0.90446 0.95398 0.89772 0.90709 0.91595 0.89518 0.95485 0.89260 0.89527 0.88672 0.92062 0.90861 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.63 8.67 71.98 0.62 -6.01 16 2 C 0.24 10.83 2.21 44.24 0.10 10.93 16 3 H 0.04 2.05 5.97 -2.39 -0.01 2.03 16 4 C -0.51 -26.51 8.57 25.60 0.22 -26.29 16 5 H 0.06 3.12 7.58 -2.91 -0.02 3.10 16 6 C 0.03 1.64 5.45 84.65 0.46 2.10 16 7 N -0.93 -54.19 13.96 21.45 0.30 -53.89 16 8 Si 0.92 42.52 24.37 68.60 1.67 44.20 16 9 H -0.26 -11.51 6.87 99.48 0.68 -10.83 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.25 -11.40 6.53 99.48 0.65 -10.75 16 12 N -0.99 -39.03 3.12 -520.44 -1.62 -40.65 16 13 C 0.10 3.39 9.28 127.77 1.19 4.58 16 14 S 2.79 104.00 5.20 -56.49 -0.29 103.70 16 15 O -0.99 -36.55 13.39 -128.00 -1.71 -38.26 16 16 O -1.01 -43.27 15.52 -128.00 -1.99 -45.26 16 17 N -1.00 -30.95 2.54 -539.13 -1.37 -32.32 16 18 C 0.08 2.40 8.76 127.77 1.12 3.52 16 19 C 0.11 2.84 4.26 86.38 0.37 3.21 16 20 C 0.07 1.66 0.42 4.05 0.00 1.66 16 21 N -0.52 -10.23 4.81 -895.69 -4.31 -14.53 16 22 C 0.02 0.28 9.15 127.69 1.17 1.45 16 23 C 0.02 0.31 9.17 127.69 1.17 1.48 16 24 C -0.14 -3.06 6.02 31.18 0.19 -2.87 16 25 C -0.13 -2.89 8.00 31.18 0.25 -2.64 16 26 C -0.14 -3.75 6.81 31.12 0.21 -3.53 16 27 H 0.07 2.67 7.67 -2.39 -0.02 2.65 16 28 H 0.04 1.83 3.27 -2.39 -0.01 1.83 16 29 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 31 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 2.05 7.79 -2.39 -0.02 2.04 16 33 H 0.07 2.60 7.02 -2.39 -0.02 2.58 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.11 2.37 6.42 -2.39 -0.02 2.35 16 36 H 0.07 2.15 7.21 -2.39 -0.02 2.13 16 37 H 0.09 2.09 6.43 -2.38 -0.02 2.07 16 38 H 0.08 2.11 6.68 -2.39 -0.02 2.09 16 39 H 0.03 0.47 6.72 -2.39 -0.02 0.45 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.07 1.15 6.53 -2.39 -0.02 1.14 16 42 H 0.07 1.28 7.00 -2.39 -0.02 1.26 16 43 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.03 0.50 6.91 -2.38 -0.02 0.49 16 45 H 0.09 2.19 4.62 -2.39 -0.01 2.18 16 46 H 0.09 1.64 6.70 -2.39 -0.02 1.62 16 47 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 48 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.07 1.89 7.08 -2.39 -0.02 1.87 16 50 H 0.06 1.98 4.47 -2.38 -0.01 1.97 16 Total: -1.00 -63.67 371.57 -1.40 -65.07 By element: Atomic # 1 Polarization: 23.51 SS G_CDS: 0.85 Total: 24.36 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 7.07 Total: -12.42 kcal Atomic # 7 Polarization: -134.40 SS G_CDS: -7.00 Total: -141.40 kcal Atomic # 8 Polarization: -79.82 SS G_CDS: -3.70 Total: -83.52 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.67 Total: 44.20 kcal Atomic # 16 Polarization: 104.00 SS G_CDS: -0.29 Total: 103.70 kcal Total: -63.67 -1.40 -65.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332047654.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.783 kcal (2) G-P(sol) polarization free energy of solvation -63.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds