Wall clock time and date at job start Tue Mar 31 2020 17:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47442 * 2 1 4 4 C 1.46500 * 119.99716 * 275.00271 * 3 2 1 5 5 C 1.50707 * 109.47060 * 280.11606 * 4 3 2 6 6 H 1.07996 * 119.99708 * 4.11075 * 5 4 3 7 7 C 1.37872 * 120.00026 * 184.11138 * 5 4 3 8 8 N 1.31514 * 120.00182 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46843 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47219 * 119.99756 * 9 7 5 12 12 H 1.48497 * 109.47522 * 240.00098 * 9 7 5 13 13 S 1.65596 * 119.99746 * 95.00219 * 3 2 1 14 14 O 1.42094 * 106.40419 * 330.09310 * 13 3 2 15 15 O 1.42102 * 106.39991 * 197.17682 * 13 3 2 16 16 N 1.65604 * 107.21780 * 83.63918 * 13 3 2 17 17 C 1.46494 * 120.00249 * 65.43917 * 16 13 3 18 18 C 1.53002 * 109.47079 * 165.62765 * 17 16 13 19 19 C 1.52997 * 109.46789 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.46884 * 180.02562 * 19 18 17 21 21 C 1.46846 * 111.00024 * 170.00302 * 20 19 18 22 22 C 1.53033 * 109.52251 * 185.84275 * 21 20 19 23 23 C 1.53120 * 109.27631 * 300.81704 * 22 21 20 24 24 C 1.53117 * 109.16306 * 57.65646 * 23 22 21 25 25 C 1.46845 * 110.99950 * 294.21115 * 20 19 18 26 26 H 1.08993 * 109.47238 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46650 * 300.00280 * 1 2 3 28 28 H 1.08993 * 109.47011 * 59.99764 * 1 2 3 29 29 H 1.09008 * 109.47027 * 240.00039 * 2 1 3 30 30 H 1.09002 * 109.47175 * 120.00491 * 2 1 3 31 31 H 1.09000 * 109.47311 * 40.11762 * 4 3 2 32 32 H 1.08999 * 109.46641 * 160.12038 * 4 3 2 33 33 H 0.97000 * 120.00507 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99410 * 245.43407 * 16 13 3 35 35 H 1.09006 * 109.47201 * 45.62710 * 17 16 13 36 36 H 1.08999 * 109.47140 * 285.62889 * 17 16 13 37 37 H 1.08997 * 109.46874 * 59.99881 * 18 17 16 38 38 H 1.08999 * 109.47236 * 300.00065 * 18 17 16 39 39 H 1.08997 * 109.47347 * 60.00370 * 19 18 17 40 40 H 1.08999 * 109.47448 * 300.00134 * 19 18 17 41 41 H 1.09002 * 109.46599 * 65.82264 * 21 20 19 42 42 H 1.09004 * 109.45997 * 305.85589 * 21 20 19 43 43 H 1.09002 * 109.50370 * 180.87688 * 22 21 20 44 44 H 1.09000 * 109.50905 * 60.75903 * 22 21 20 45 45 H 1.09002 * 109.52738 * 177.56639 * 23 22 21 46 46 H 1.09005 * 109.52397 * 297.74941 * 23 22 21 47 47 H 1.08999 * 109.50399 * 62.28603 * 24 23 22 48 48 H 1.08998 * 109.50386 * 182.40396 * 24 23 22 49 49 H 1.09001 * 109.46183 * 294.17815 * 25 20 19 50 50 H 1.08999 * 109.46583 * 54.14307 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4377 1.6934 -1.9436 6 1 4.0487 0.9134 -1.5140 7 6 3.8280 2.3092 -3.1138 8 7 3.0836 3.2587 -3.6371 9 14 5.4141 1.7950 -3.9559 10 1 6.0628 0.7137 -3.1716 11 1 5.1111 1.3007 -5.3230 12 1 6.3292 2.9613 -4.0427 13 16 2.4123 2.1201 1.4287 14 8 1.5769 1.5429 2.4226 15 8 2.4522 3.5152 1.1613 16 7 3.9620 1.6711 1.8018 17 6 5.0732 2.0923 0.9451 18 6 6.3968 1.8664 1.6785 19 6 7.5572 2.3058 0.7835 20 7 8.8281 2.0883 1.4875 21 6 9.9695 2.2728 0.5822 22 6 11.2636 1.8978 1.3078 23 6 11.4230 2.7829 2.5470 24 6 10.1987 2.6086 3.4500 25 6 8.9354 2.9629 2.6622 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.3119 1.8787 -1.9111 32 1 2.1835 3.1801 -1.0655 33 1 3.3580 3.6918 -4.4606 34 1 4.1340 1.1291 2.5877 35 1 4.9665 3.1504 0.7056 36 1 5.0637 1.5088 0.0245 37 1 6.5034 0.8084 1.9180 38 1 6.4063 2.4499 2.5991 39 1 7.4508 3.3637 0.5437 40 1 7.5475 1.7219 -0.1369 41 1 10.0186 3.3152 0.2673 42 1 9.8458 1.6347 -0.2929 43 1 12.1121 2.0497 0.6406 44 1 11.2210 0.8516 1.6108 45 1 12.3212 2.4902 3.0907 46 1 11.5048 3.8261 2.2416 47 1 10.1393 1.5736 3.7867 48 1 10.2863 3.2683 4.3132 49 1 8.9892 4.0020 2.3376 50 1 8.0606 2.8261 3.2979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336891921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:14 Heat of formation + Delta-G solvation = -95.735370 kcal Electronic energy + Delta-G solvation = -28327.483636 eV Core-core repulsion = 24515.467029 eV Total energy + Delta-G solvation = -3812.016607 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.16625 -36.64808 -36.09056 -35.82552 -35.15997 -33.69826 -32.71864 -31.04958 -30.05245 -29.90767 -26.63319 -25.42083 -23.38884 -23.15633 -22.81411 -21.69165 -20.93491 -19.84122 -18.68964 -17.05838 -16.81741 -16.54382 -16.25632 -15.51363 -15.47963 -14.92840 -14.85230 -14.55132 -14.32415 -14.06813 -13.71758 -13.62978 -13.30552 -13.11743 -12.90244 -12.61756 -12.31116 -12.10179 -12.05887 -11.91067 -11.68083 -11.48028 -11.36710 -11.29879 -11.26302 -11.08577 -11.04586 -10.98045 -10.93853 -10.77289 -10.53477 -10.47929 -10.36050 -10.30590 -10.00431 -9.78406 -8.92916 -8.52096 -8.37591 -8.04009 -6.12976 -4.19325 1.34478 3.20462 3.29485 3.30611 3.54805 3.83197 4.21208 4.33066 4.63092 4.67022 4.74329 4.98664 5.09116 5.15112 5.20800 5.21604 5.29250 5.34964 5.39336 5.43939 5.46182 5.54122 5.67257 5.72113 5.77520 5.79225 5.79911 5.84282 5.89764 5.93234 6.00096 6.05658 6.08515 6.15955 6.20058 6.34545 6.42764 6.58356 6.69990 6.74545 7.03634 7.04980 7.31781 7.40162 7.47715 7.70661 7.84887 8.15091 8.85402 9.46153 10.95037 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.003904 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.634753 B = 7170.182769 C = 9075.621106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.786 3.214 14 O -1.002 7.002 15 O -0.980 6.980 16 N -1.130 6.130 17 C 0.117 3.883 18 C -0.119 4.119 19 C 0.054 3.946 20 N -0.538 5.538 21 C 0.053 3.947 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.050 3.950 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.264 0.736 34 H 0.406 0.594 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.040 0.960 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.496 -4.175 10.499 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.577 4.577 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.794 3.206 14 O -0.986 6.986 15 O -0.963 6.963 16 N -0.889 5.889 17 C -0.009 4.009 18 C -0.158 4.158 19 C -0.074 4.074 20 N -0.263 5.263 21 C -0.075 4.075 22 C -0.154 4.154 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.078 4.078 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.050 0.950 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.893 -3.806 10.824 15.821 hybrid contribution 1.206 0.131 -0.896 1.508 sum 12.099 -3.675 9.928 16.076 Atomic orbital electron populations 1.22211 0.96992 1.01297 1.02477 1.20940 0.93619 0.82905 1.01960 1.57714 1.78629 1.22928 1.24080 1.19217 0.97206 0.92579 0.78953 1.21572 1.07256 1.20615 1.08220 0.91705 1.24942 0.97006 0.94772 0.97056 1.69942 1.37865 1.24353 1.20389 0.86610 0.83598 0.78547 0.79716 1.19502 1.20965 1.20890 1.01707 0.72606 0.73710 0.72610 1.93544 1.65580 1.79809 1.59685 1.93573 1.86571 1.31005 1.85191 1.55961 1.25237 1.69903 1.37795 1.21345 0.84554 1.01459 0.93555 1.21756 0.92924 1.02446 0.98663 1.22068 0.88094 1.00014 0.97263 1.61922 1.01953 1.54242 1.08146 1.22092 0.90506 0.99550 0.95334 1.21578 0.96442 1.00537 0.96822 1.21585 0.97979 0.99740 0.96643 1.21581 0.94012 1.02246 0.97574 1.22167 0.98669 0.94196 0.92798 0.92480 0.92486 0.92120 0.90194 0.92222 0.94819 0.92641 0.92654 0.76269 0.90542 0.89542 0.90766 0.91742 0.94203 0.90040 0.94944 0.90627 0.91746 0.91122 0.92023 0.92406 0.91152 0.91780 0.94995 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.27 6.02 -4.04 -0.02 2.25 16 3 N -0.99 -20.03 2.84 -115.65 -0.33 -20.36 16 4 C 0.24 5.87 5.46 -5.19 -0.03 5.84 16 5 C -0.54 -13.41 8.51 -34.44 -0.29 -13.71 16 6 H 0.06 1.54 6.47 -52.49 -0.34 1.20 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 9 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 10 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 13 S 2.79 54.68 6.07 -107.50 -0.65 54.03 16 14 O -1.00 -20.34 17.17 -57.17 -0.98 -21.32 16 15 O -0.98 -22.82 16.01 -57.17 -0.92 -23.74 16 16 N -1.13 -17.95 6.06 -10.61 -0.06 -18.01 16 17 C 0.12 1.90 6.21 -4.04 -0.03 1.88 16 18 C -0.12 -1.54 5.28 -26.73 -0.14 -1.68 16 19 C 0.05 0.71 4.96 -3.82 -0.02 0.69 16 20 N -0.54 -6.35 4.66 -234.67 -1.09 -7.44 16 21 C 0.05 0.58 5.46 -3.84 -0.02 0.56 16 22 C -0.12 -1.04 6.09 -26.65 -0.16 -1.20 16 23 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 24 C -0.12 -1.03 6.09 -26.65 -0.16 -1.19 16 25 C 0.05 0.52 5.29 -3.83 -0.02 0.50 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 28 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 29 H 0.08 1.37 8.09 -51.92 -0.42 0.95 16 30 H 0.06 0.90 7.78 -51.93 -0.40 0.50 16 31 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 32 H 0.06 1.50 6.77 -51.93 -0.35 1.15 16 33 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 34 H 0.41 5.26 8.65 -34.47 -0.30 4.96 16 35 H 0.08 1.38 7.75 -51.93 -0.40 0.98 16 36 H 0.09 1.54 5.86 -51.93 -0.30 1.23 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 39 H 0.04 0.54 8.12 -51.93 -0.42 0.12 16 40 H 0.08 1.12 7.99 -51.93 -0.41 0.71 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.08 0.82 8.02 -51.93 -0.42 0.41 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 50 H 0.08 0.82 6.21 -51.93 -0.32 0.50 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -30.53 400.07 -12.11 -42.64 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -9.05 Total: 5.34 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -0.77 Total: -7.96 kcal Atomic # 7 Polarization: -69.16 SS G_CDS: -0.75 Total: -69.91 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.90 Total: -45.05 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.65 Total: 54.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.53 -12.11 -42.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.098 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds