Wall clock time and date at job start Tue Mar 31 2020 17:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47442 * 2 1 4 4 C 1.46500 * 119.99716 * 275.00271 * 3 2 1 5 5 C 1.50707 * 109.47060 * 280.11606 * 4 3 2 6 6 H 1.07996 * 119.99708 * 4.11075 * 5 4 3 7 7 C 1.37872 * 120.00026 * 184.11138 * 5 4 3 8 8 N 1.31514 * 120.00182 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00224 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46843 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47219 * 119.99756 * 9 7 5 12 12 H 1.48497 * 109.47522 * 240.00098 * 9 7 5 13 13 S 1.65596 * 119.99746 * 95.00219 * 3 2 1 14 14 O 1.42094 * 106.40419 * 330.09310 * 13 3 2 15 15 O 1.42102 * 106.39991 * 197.17682 * 13 3 2 16 16 N 1.65604 * 107.21780 * 83.63918 * 13 3 2 17 17 C 1.46494 * 120.00249 * 65.43917 * 16 13 3 18 18 C 1.53002 * 109.47079 * 165.62765 * 17 16 13 19 19 C 1.52997 * 109.46789 * 179.97438 * 18 17 16 20 20 N 1.46905 * 109.46884 * 180.02562 * 19 18 17 21 21 C 1.46846 * 111.00024 * 170.00302 * 20 19 18 22 22 C 1.53033 * 109.52251 * 185.84275 * 21 20 19 23 23 C 1.53120 * 109.27631 * 300.81704 * 22 21 20 24 24 C 1.53117 * 109.16306 * 57.65646 * 23 22 21 25 25 C 1.46845 * 110.99950 * 294.21115 * 20 19 18 26 26 H 1.08993 * 109.47238 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46650 * 300.00280 * 1 2 3 28 28 H 1.08993 * 109.47011 * 59.99764 * 1 2 3 29 29 H 1.09008 * 109.47027 * 240.00039 * 2 1 3 30 30 H 1.09002 * 109.47175 * 120.00491 * 2 1 3 31 31 H 1.09000 * 109.47311 * 40.11762 * 4 3 2 32 32 H 1.08999 * 109.46641 * 160.12038 * 4 3 2 33 33 H 0.97000 * 120.00507 * 180.02562 * 8 7 5 34 34 H 0.97001 * 119.99410 * 245.43407 * 16 13 3 35 35 H 1.09006 * 109.47201 * 45.62710 * 17 16 13 36 36 H 1.08999 * 109.47140 * 285.62889 * 17 16 13 37 37 H 1.08997 * 109.46874 * 59.99881 * 18 17 16 38 38 H 1.08999 * 109.47236 * 300.00065 * 18 17 16 39 39 H 1.08997 * 109.47347 * 60.00370 * 19 18 17 40 40 H 1.08999 * 109.47448 * 300.00134 * 19 18 17 41 41 H 1.09002 * 109.46599 * 65.82264 * 21 20 19 42 42 H 1.09004 * 109.45997 * 305.85589 * 21 20 19 43 43 H 1.09002 * 109.50370 * 180.87688 * 22 21 20 44 44 H 1.09000 * 109.50905 * 60.75903 * 22 21 20 45 45 H 1.09002 * 109.52738 * 177.56639 * 23 22 21 46 46 H 1.09005 * 109.52397 * 297.74941 * 23 22 21 47 47 H 1.08999 * 109.50399 * 62.28603 * 24 23 22 48 48 H 1.08998 * 109.50386 * 182.40396 * 24 23 22 49 49 H 1.09001 * 109.46183 * 294.17815 * 25 20 19 50 50 H 1.08999 * 109.46583 * 54.14307 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4377 1.6934 -1.9436 6 1 4.0487 0.9134 -1.5140 7 6 3.8280 2.3092 -3.1138 8 7 3.0836 3.2587 -3.6371 9 14 5.4141 1.7950 -3.9559 10 1 6.0628 0.7137 -3.1716 11 1 5.1111 1.3007 -5.3230 12 1 6.3292 2.9613 -4.0427 13 16 2.4123 2.1201 1.4287 14 8 1.5769 1.5429 2.4226 15 8 2.4522 3.5152 1.1613 16 7 3.9620 1.6711 1.8018 17 6 5.0732 2.0923 0.9451 18 6 6.3968 1.8664 1.6785 19 6 7.5572 2.3058 0.7835 20 7 8.8281 2.0883 1.4875 21 6 9.9695 2.2728 0.5822 22 6 11.2636 1.8978 1.3078 23 6 11.4230 2.7829 2.5470 24 6 10.1987 2.6086 3.4500 25 6 8.9354 2.9629 2.6622 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.3119 1.8787 -1.9111 32 1 2.1835 3.1801 -1.0655 33 1 3.3580 3.6918 -4.4606 34 1 4.1340 1.1291 2.5877 35 1 4.9665 3.1504 0.7056 36 1 5.0637 1.5088 0.0245 37 1 6.5034 0.8084 1.9180 38 1 6.4063 2.4499 2.5991 39 1 7.4508 3.3637 0.5437 40 1 7.5475 1.7219 -0.1369 41 1 10.0186 3.3152 0.2673 42 1 9.8458 1.6347 -0.2929 43 1 12.1121 2.0497 0.6406 44 1 11.2210 0.8516 1.6108 45 1 12.3212 2.4902 3.0907 46 1 11.5048 3.8261 2.2416 47 1 10.1393 1.5736 3.7867 48 1 10.2863 3.2683 4.3132 49 1 8.9892 4.0020 2.3376 50 1 8.0606 2.8261 3.2979 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336891921.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:13 Heat of formation + Delta-G solvation = -117.230579 kcal Electronic energy + Delta-G solvation = -28328.415738 eV Core-core repulsion = 24515.467029 eV Total energy + Delta-G solvation = -3812.948709 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.01976 -38.31204 -37.67965 -37.10075 -36.86671 -34.70019 -34.63719 -31.84501 -31.48958 -31.10909 -28.48039 -26.46052 -24.92981 -24.27690 -23.73999 -23.25194 -22.02830 -20.60424 -20.24308 -18.64980 -18.56686 -18.21477 -17.50742 -16.99731 -16.63758 -16.36467 -15.93478 -15.77500 -15.38251 -15.24413 -14.94938 -14.79998 -14.60466 -14.44065 -14.00527 -13.78260 -13.74182 -13.60328 -13.54422 -13.31689 -13.14138 -13.00900 -12.97219 -12.72759 -12.64694 -12.45478 -12.30400 -12.28359 -12.10590 -12.02909 -11.90838 -11.67192 -11.56442 -11.54276 -11.25178 -11.12180 -10.56341 -10.34623 -9.75599 -9.30884 -8.13604 -6.26367 -0.25751 1.42779 1.45502 1.55806 2.02836 2.44195 2.63799 2.90229 3.19075 3.49661 3.86335 3.89393 3.97751 4.01240 4.10728 4.13044 4.18401 4.35357 4.45048 4.48643 4.49884 4.54246 4.58276 4.69107 4.71355 4.75481 4.78635 4.82713 4.92560 4.96056 5.01804 5.07192 5.10040 5.18403 5.22349 5.24106 5.29207 5.31744 5.36126 5.44651 5.49206 5.56488 5.81425 5.94026 6.09587 6.15108 6.17209 6.27847 6.86197 7.43374 8.95067 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.003904 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.634753 B = 7170.182769 C = 9075.621106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.284 1.284 13 S 2.799 3.201 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.112 6.112 17 C 0.120 3.880 18 C -0.105 4.105 19 C 0.054 3.946 20 N -0.539 5.539 21 C 0.048 3.952 22 C -0.112 4.112 23 C -0.121 4.121 24 C -0.113 4.113 25 C 0.045 3.955 26 H 0.090 0.910 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.016 0.984 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.069 0.931 48 H 0.077 0.923 49 H 0.024 0.976 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.491 -6.159 11.800 18.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.572 4.572 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.210 1.210 13 S 2.807 3.193 14 O -0.990 6.990 15 O -1.004 7.004 16 N -0.875 5.875 17 C -0.007 4.007 18 C -0.144 4.144 19 C -0.075 4.075 20 N -0.264 5.264 21 C -0.080 4.080 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.150 4.150 25 C -0.082 4.082 26 H 0.109 0.891 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.034 0.966 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.259 0.741 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.095 0.905 46 H 0.074 0.926 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.043 0.957 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.882 -5.829 12.165 18.653 hybrid contribution 0.548 0.737 -1.243 1.546 sum 13.430 -5.092 10.922 18.044 Atomic orbital electron populations 1.22197 0.96084 1.03152 1.01318 1.21239 0.94519 0.81220 1.03315 1.57612 1.79341 1.24106 1.22616 1.18754 0.96546 0.91079 0.80222 1.21851 1.07225 1.20253 1.07864 0.90352 1.25764 1.00149 0.94777 0.97957 1.70081 1.39943 1.25956 1.21024 0.85618 0.79745 0.78545 0.78559 1.17439 1.21087 1.21020 1.01129 0.73178 0.72777 0.72202 1.93531 1.66324 1.79593 1.59532 1.93526 1.87328 1.33810 1.85698 1.55537 1.23753 1.69892 1.38344 1.21285 0.86103 0.99676 0.93636 1.21640 0.90740 1.03554 0.98506 1.22008 0.89100 0.99124 0.97243 1.61965 1.01503 1.54492 1.08436 1.22183 0.91149 0.99150 0.95492 1.21563 0.95695 1.00512 0.97189 1.21597 0.98392 0.99512 0.96389 1.21572 0.93197 1.02481 0.97796 1.22261 0.99850 0.93623 0.92499 0.89136 0.93379 0.93525 0.90025 0.89582 0.96617 0.96164 0.92760 0.74131 0.92968 0.90924 0.89280 0.90541 0.95434 0.90806 0.95598 0.90947 0.90497 0.91239 0.90501 0.92609 0.91194 0.90451 0.95745 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.02 6.02 86.38 0.52 4.54 16 3 N -1.00 -40.21 2.84 -519.81 -1.48 -41.68 16 4 C 0.26 12.84 5.46 85.64 0.47 13.30 16 5 C -0.53 -26.75 8.51 25.60 0.22 -26.53 16 6 H 0.08 3.65 6.47 -2.91 -0.02 3.63 16 7 C 0.01 0.67 5.46 84.65 0.46 1.14 16 8 N -0.93 -53.45 13.29 21.45 0.28 -53.17 16 9 Si 0.95 40.77 29.54 68.60 2.03 42.79 16 10 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 S 2.80 109.32 6.07 -56.49 -0.34 108.98 16 14 O -1.01 -39.61 17.17 -128.00 -2.20 -41.80 16 15 O -1.02 -48.81 16.01 -128.00 -2.05 -50.86 16 16 N -1.11 -33.91 6.06 -187.49 -1.14 -35.05 16 17 C 0.12 3.80 6.21 86.38 0.54 4.34 16 18 C -0.11 -2.55 5.28 30.59 0.16 -2.39 16 19 C 0.05 1.37 4.96 86.30 0.43 1.80 16 20 N -0.54 -11.94 4.66 -896.36 -4.17 -16.12 16 21 C 0.05 0.98 5.46 86.32 0.47 1.45 16 22 C -0.11 -1.77 6.09 30.65 0.19 -1.59 16 23 C -0.12 -1.75 6.00 30.67 0.18 -1.56 16 24 C -0.11 -1.74 6.09 30.65 0.19 -1.55 16 25 C 0.05 0.89 5.29 86.33 0.46 1.34 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.54 7.97 -2.39 -0.02 1.52 16 28 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 29 H 0.08 2.66 8.09 -2.38 -0.02 2.64 16 30 H 0.09 2.38 7.78 -2.39 -0.02 2.36 16 31 H 0.02 0.83 8.10 -2.39 -0.02 0.81 16 32 H 0.02 1.15 6.77 -2.39 -0.02 1.14 16 33 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 34 H 0.42 9.94 8.65 -96.75 -0.84 9.10 16 35 H 0.05 1.92 7.75 -2.38 -0.02 1.90 16 36 H 0.07 2.53 5.86 -2.39 -0.01 2.51 16 37 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.08 1.69 6.43 -2.39 -0.02 1.68 16 39 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 40 H 0.07 1.97 7.99 -2.39 -0.02 1.95 16 41 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 1.50 8.02 -2.38 -0.02 1.48 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 50 H 0.08 1.52 6.21 -2.39 -0.01 1.51 16 Total: -1.00 -66.20 400.07 -3.98 -70.18 By element: Atomic # 1 Polarization: 26.76 SS G_CDS: 0.07 Total: 26.83 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 5.02 Total: -10.09 kcal Atomic # 7 Polarization: -139.52 SS G_CDS: -6.50 Total: -146.02 kcal Atomic # 8 Polarization: -88.42 SS G_CDS: -4.25 Total: -92.66 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 109.32 SS G_CDS: -0.34 Total: 108.98 kcal Total: -66.20 -3.98 -70.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336891921.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.052 kcal (2) G-P(sol) polarization free energy of solvation -66.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds