Wall clock time and date at job start Tue Mar 31 2020 17:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.46996 * 2 1 4 4 C 1.46503 * 119.99969 * 274.81901 * 3 2 1 5 5 C 1.50701 * 109.46868 * 283.89329 * 4 3 2 6 6 H 1.08005 * 120.00191 * 4.87740 * 5 4 3 7 7 C 1.37875 * 120.00207 * 184.87895 * 5 4 3 8 8 N 1.31518 * 119.99536 * 6.36466 * 7 5 4 9 9 Si 1.86794 * 120.00358 * 186.36190 * 7 5 4 10 10 H 1.48507 * 109.46789 * 64.57614 * 9 7 5 11 11 H 1.48496 * 109.47384 * 184.57318 * 9 7 5 12 12 H 1.48502 * 109.47471 * 304.57737 * 9 7 5 13 13 S 1.65602 * 119.99974 * 94.81425 * 3 2 1 14 14 O 1.42102 * 106.40196 * 338.96067 * 13 3 2 15 15 O 1.42098 * 106.39939 * 206.03784 * 13 3 2 16 16 N 1.65599 * 107.21512 * 92.50021 * 13 3 2 17 17 C 1.46501 * 120.00081 * 66.39182 * 16 13 3 18 18 C 1.52994 * 109.47089 * 164.74179 * 17 16 13 19 19 N 1.46900 * 109.47186 * 184.25679 * 18 17 16 20 20 C 1.46850 * 110.99908 * 183.88764 * 19 18 17 21 21 C 1.53039 * 109.51524 * 185.84619 * 20 19 18 22 22 C 1.53123 * 109.27587 * 300.80755 * 21 20 19 23 23 C 1.53003 * 109.57066 * 177.60040 * 22 21 20 24 24 C 1.53122 * 109.15359 * 57.67056 * 22 21 20 25 25 C 1.46841 * 111.00112 * 308.09823 * 19 18 17 26 26 H 1.09000 * 109.47016 * 185.04020 * 1 2 3 27 27 H 1.08999 * 109.47341 * 305.04604 * 1 2 3 28 28 H 1.09006 * 109.46938 * 65.04607 * 1 2 3 29 29 H 1.08999 * 109.47221 * 240.00176 * 2 1 3 30 30 H 1.08998 * 109.46716 * 119.99848 * 2 1 3 31 31 H 1.08999 * 109.47558 * 43.89073 * 4 3 2 32 32 H 1.08996 * 109.47281 * 163.89384 * 4 3 2 33 33 H 0.97003 * 119.99457 * 179.97438 * 8 7 5 34 34 H 0.96996 * 119.99964 * 246.39376 * 16 13 3 35 35 H 1.09004 * 109.47250 * 44.74281 * 17 16 13 36 36 H 1.08998 * 109.46971 * 284.74424 * 17 16 13 37 37 H 1.09005 * 109.47119 * 64.25752 * 18 17 16 38 38 H 1.09002 * 109.47563 * 304.26009 * 18 17 16 39 39 H 1.08999 * 109.46495 * 305.85785 * 20 19 18 40 40 H 1.08994 * 109.46434 * 65.83836 * 20 19 18 41 41 H 1.09005 * 109.50220 * 60.75458 * 21 20 19 42 42 H 1.08996 * 109.50766 * 180.87464 * 21 20 19 43 43 H 1.08999 * 109.52961 * 297.75866 * 22 21 20 44 44 H 1.09005 * 109.47414 * 300.28830 * 23 22 21 45 45 H 1.08993 * 109.47361 * 60.29718 * 23 22 21 46 46 H 1.09004 * 109.47070 * 180.29663 * 23 22 21 47 47 H 1.09000 * 109.50169 * 182.40053 * 24 22 21 48 48 H 1.08997 * 109.53761 * 62.29878 * 24 22 21 49 49 H 1.09000 * 109.46495 * 294.17732 * 25 19 18 50 50 H 1.09001 * 109.46197 * 54.15316 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1620 2.1074 -1.2643 5 6 3.3951 1.6245 -1.9836 6 1 3.9663 0.8003 -1.5824 7 6 3.7941 2.2348 -3.1537 8 7 3.1744 3.3151 -3.5763 9 14 5.2147 1.5273 -4.1389 10 1 4.8439 0.1814 -4.6455 11 1 5.5162 2.4218 -5.2852 12 1 6.4133 1.4159 -3.2693 13 16 2.4078 2.1218 1.4291 14 8 1.7255 1.4071 2.4504 15 8 2.2451 3.5171 1.2153 16 7 4.0249 1.8734 1.6850 17 6 5.0106 2.4834 0.7891 18 6 6.3943 2.4275 1.4394 19 7 7.3642 3.1290 0.5879 20 6 8.7225 3.0170 1.1349 21 6 9.6797 3.8770 0.3066 22 6 9.6550 3.4022 -1.1489 23 6 10.5644 4.2956 -1.9949 24 6 8.2209 3.4833 -1.6795 25 6 7.3058 2.6348 -0.7936 26 1 -0.3633 -1.0237 0.0903 27 1 -0.3634 0.5901 0.8413 28 1 -0.3633 0.4336 -0.9318 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2852 1.9298 -1.8870 32 1 2.2539 3.1745 -1.0620 33 1 3.4554 3.7447 -4.3994 34 1 4.3196 1.3240 2.4281 35 1 4.7384 3.5224 0.6029 36 1 5.0303 1.9383 -0.1545 37 1 6.6990 1.3875 1.5566 38 1 6.3558 2.9071 2.4175 39 1 8.7271 3.3615 2.1690 40 1 9.0444 1.9763 1.0974 41 1 9.3662 4.9199 0.3548 42 1 10.6905 3.7816 0.7032 43 1 10.0054 2.3715 -1.2020 44 1 10.2146 5.3266 -1.9395 45 1 11.5849 4.2373 -1.6166 46 1 10.5415 3.9595 -3.0316 47 1 8.1893 3.1064 -2.7018 48 1 7.8842 4.5198 -1.6631 49 1 7.6343 1.5959 -0.8219 50 1 6.2815 2.7019 -1.1603 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336906304.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:04 Heat of formation + Delta-G solvation = -112.729350 kcal Electronic energy + Delta-G solvation = -29217.738401 eV Core-core repulsion = 25404.984880 eV Total energy + Delta-G solvation = -3812.753521 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24833 -38.32732 -37.68643 -37.01453 -36.88466 -34.85237 -34.63457 -31.81773 -31.49324 -30.17791 -28.49635 -27.35197 -24.94266 -24.53417 -23.45883 -23.23314 -22.07781 -20.60885 -20.32321 -18.72150 -18.53217 -18.26846 -17.41331 -16.92073 -16.50852 -16.22071 -16.12159 -15.62564 -15.42874 -15.13757 -14.84904 -14.81457 -14.73504 -14.57467 -13.89947 -13.77017 -13.59531 -13.47464 -13.30335 -13.27905 -13.14610 -12.98906 -12.91390 -12.75564 -12.70222 -12.60617 -12.44261 -12.23871 -12.21391 -12.09430 -12.03782 -11.72664 -11.58765 -11.52545 -11.17484 -11.11378 -10.51105 -10.32034 -9.76467 -9.25397 -8.12414 -6.24064 -0.27638 1.44742 1.46276 1.53027 1.99631 2.44735 2.60149 3.00084 3.19631 3.46022 3.81433 3.88841 3.89797 3.98884 4.00829 4.16072 4.33148 4.38786 4.45189 4.48061 4.52403 4.56674 4.61616 4.67531 4.72403 4.75509 4.80174 4.86128 4.97163 4.99435 5.00654 5.07615 5.16085 5.17824 5.19217 5.27260 5.30108 5.30296 5.35566 5.42164 5.55079 5.55545 5.79817 5.91751 6.09548 6.16146 6.20440 6.27107 6.85757 7.44465 8.95421 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004842 C = 0.003726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.332201 B = 5781.388853 C = 7513.837252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.995 5.995 4 C 0.259 3.741 5 C -0.531 4.531 6 H 0.072 0.928 7 C 0.022 3.978 8 N -0.924 5.924 9 Si 0.938 3.062 10 H -0.276 1.276 11 H -0.293 1.293 12 H -0.245 1.245 13 S 2.801 3.199 14 O -1.003 7.003 15 O -1.019 7.019 16 N -1.112 6.112 17 C 0.118 3.882 18 C 0.060 3.940 19 N -0.546 5.546 20 C 0.055 3.945 21 C -0.106 4.106 22 C -0.091 4.091 23 C -0.142 4.142 24 C -0.114 4.114 25 C 0.046 3.954 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.012 0.988 32 H 0.022 0.978 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.032 0.968 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.583 -5.067 8.007 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.090 0.910 7 C -0.178 4.178 8 N -0.563 5.563 9 Si 0.763 3.237 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.169 1.169 13 S 2.809 3.191 14 O -0.988 6.988 15 O -1.003 7.003 16 N -0.875 5.875 17 C -0.009 4.009 18 C -0.069 4.069 19 N -0.272 5.272 20 C -0.072 4.072 21 C -0.143 4.143 22 C -0.110 4.110 23 C -0.200 4.200 24 C -0.152 4.152 25 C -0.081 4.081 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.071 0.929 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.074 0.926 48 H 0.078 0.922 49 H 0.050 0.950 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.796 -3.834 8.278 14.912 hybrid contribution 0.623 -1.191 -1.025 1.690 sum 12.418 -5.025 7.254 15.234 Atomic orbital electron populations 1.22184 0.96029 1.03121 1.01259 1.21242 0.94544 0.81285 1.03316 1.57629 1.79297 1.24077 1.22661 1.18750 0.96346 0.91129 0.80225 1.21610 1.10692 1.17030 1.07725 0.90993 1.25652 0.99077 0.94538 0.98519 1.70076 1.43317 1.19706 1.23198 0.85938 0.81026 0.78012 0.78739 1.20188 1.21953 1.16889 1.01084 0.73127 0.72662 0.72258 1.93530 1.72920 1.74659 1.57641 1.93534 1.86158 1.34234 1.86364 1.55503 1.24578 1.66150 1.41288 1.21388 0.88522 0.97911 0.93079 1.22190 0.89840 0.97799 0.97098 1.61897 1.06560 1.56890 1.01828 1.22183 0.86936 0.98772 0.99336 1.21630 0.99178 0.99766 0.93773 1.21185 0.93966 1.00010 0.95828 1.21780 0.99491 0.99348 0.99340 1.21653 0.95416 1.00223 0.97862 1.22209 1.00571 0.96321 0.89047 0.89092 0.93729 0.93303 0.89968 0.89606 0.96955 0.96033 0.92755 0.74186 0.92741 0.90519 0.92943 0.88835 0.89374 0.94466 0.91775 0.89357 0.91381 0.92866 0.91148 0.93041 0.92636 0.92161 0.95013 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.10 10.24 71.98 0.74 -4.36 16 2 C 0.12 4.04 6.01 86.38 0.52 4.55 16 3 N -1.00 -40.33 2.86 -519.83 -1.49 -41.81 16 4 C 0.26 12.81 5.53 85.63 0.47 13.29 16 5 C -0.53 -26.30 7.59 25.60 0.19 -26.10 16 6 H 0.07 3.35 7.29 -2.91 -0.02 3.33 16 7 C 0.02 1.16 5.45 84.65 0.46 1.62 16 8 N -0.92 -52.38 13.28 21.45 0.28 -52.09 16 9 Si 0.94 40.04 29.54 68.60 2.03 42.06 16 10 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 13 S 2.80 110.21 6.12 -56.49 -0.35 109.87 16 14 O -1.00 -39.33 17.03 -128.00 -2.18 -41.51 16 15 O -1.02 -49.00 16.12 -128.00 -2.06 -51.07 16 16 N -1.11 -35.17 6.05 -187.49 -1.14 -36.31 16 17 C 0.12 4.03 5.58 86.38 0.48 4.51 16 18 C 0.06 1.58 5.27 86.30 0.45 2.03 16 19 N -0.55 -15.07 4.76 -896.37 -4.27 -19.34 16 20 C 0.06 1.14 5.46 86.33 0.47 1.61 16 21 C -0.11 -2.01 5.38 30.65 0.16 -1.84 16 22 C -0.09 -1.95 2.79 -10.71 -0.03 -1.98 16 23 C -0.14 -2.60 9.20 71.98 0.66 -1.94 16 24 C -0.11 -3.24 5.38 30.65 0.16 -3.07 16 25 C 0.05 1.45 5.03 86.33 0.43 1.88 16 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.08 2.71 7.94 -2.39 -0.02 2.69 16 30 H 0.09 2.45 7.55 -2.39 -0.02 2.43 16 31 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.02 1.22 6.84 -2.39 -0.02 1.21 16 33 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 34 H 0.42 10.19 8.66 -96.75 -0.84 9.35 16 35 H 0.05 2.22 7.71 -2.39 -0.02 2.20 16 36 H 0.08 2.93 4.20 -2.39 -0.01 2.92 16 37 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 40 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 49 H 0.03 0.95 8.14 -2.39 -0.02 0.94 16 50 H 0.07 2.50 5.94 -2.39 -0.01 2.49 16 Total: -1.00 -65.18 398.83 -3.91 -69.09 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.07 Total: 30.90 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.19 Total: -9.79 kcal Atomic # 7 Polarization: -142.95 SS G_CDS: -6.61 Total: -149.55 kcal Atomic # 8 Polarization: -88.33 SS G_CDS: -4.24 Total: -92.57 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.06 kcal Atomic # 16 Polarization: 110.21 SS G_CDS: -0.35 Total: 109.87 kcal Total: -65.18 -3.91 -69.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336906304.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.639 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds