Wall clock time and date at job start Tue Mar 31 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.47089 * 120.87617 * 269.71967 * 16 13 3 18 18 C 1.53696 * 108.27464 * 128.75423 * 17 16 13 19 19 N 1.46902 * 109.25807 * 54.08274 * 18 17 16 20 20 C 1.46898 * 111.00293 * 172.60742 * 19 18 17 21 21 C 1.52996 * 109.46955 * 294.29832 * 20 19 18 22 22 C 1.52997 * 109.47042 * 174.99633 * 21 20 19 23 23 C 1.52998 * 109.47511 * 294.99935 * 21 20 19 24 24 C 1.46904 * 111.26849 * 296.75611 * 19 18 17 25 25 C 1.47072 * 120.88731 * 89.99713 * 16 13 3 26 26 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 28 28 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 29 29 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 30 30 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 31 31 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 32 32 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.62771 * 248.51902 * 17 16 13 35 35 H 1.08995 * 109.63024 * 9.10347 * 17 16 13 36 36 H 1.09000 * 109.65389 * 294.08133 * 18 17 16 37 37 H 1.08992 * 109.42206 * 173.94622 * 18 17 16 38 38 H 1.08999 * 109.46962 * 54.29934 * 20 19 18 39 39 H 1.08999 * 109.47366 * 174.30034 * 20 19 18 40 40 H 1.09006 * 109.46844 * 55.00291 * 21 20 19 41 41 H 1.09007 * 109.47272 * 60.00492 * 22 21 20 42 42 H 1.09007 * 109.47621 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47873 * 300.00734 * 22 21 20 44 44 H 1.08997 * 109.47172 * 300.00120 * 23 21 20 45 45 H 1.09000 * 109.46607 * 60.00072 * 23 21 20 46 46 H 1.08996 * 109.46965 * 179.97438 * 23 21 20 47 47 H 1.09001 * 109.49190 * 303.14400 * 24 19 18 48 48 H 1.08994 * 109.49517 * 183.06018 * 24 19 18 49 49 H 1.09008 * 109.62445 * 350.89956 * 25 16 13 50 50 H 1.09003 * 109.63062 * 111.47195 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 1.7680 3.6310 3.5749 9 14 -0.9168 4.2355 3.2553 10 1 -1.6961 3.2797 4.0826 11 1 -0.6798 5.4809 4.0289 12 1 -1.6775 4.5567 2.0212 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 5.0570 2.7262 -1.2202 18 6 6.1005 1.8969 -0.4551 19 7 6.5841 0.8110 -1.3182 20 6 7.7072 0.1009 -0.6918 21 6 8.9058 1.0445 -0.5753 22 6 10.0326 0.3458 0.1883 23 6 9.3957 1.4220 -1.9747 24 6 5.5001 -0.1186 -1.6630 25 6 4.4323 0.6249 -2.4724 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.9080 2.8919 1.1512 32 1 2.4690 1.4183 2.0480 33 1 1.6882 4.1509 4.3900 34 1 5.5312 3.2300 -2.0625 35 1 4.6119 3.4635 -0.5522 36 1 5.6471 1.4742 0.4415 37 1 6.9364 2.5370 -0.1732 38 1 7.4138 -0.2382 0.3017 39 1 7.9799 -0.7591 -1.3034 40 1 8.6080 1.9457 -0.0391 41 1 10.3304 -0.5554 -0.3478 42 1 10.8865 1.0182 0.2717 43 1 9.6837 0.0768 1.1853 44 1 9.6935 0.5209 -2.5108 45 1 8.5929 1.9199 -2.5186 46 1 10.2494 2.0946 -1.8916 47 1 5.0550 -0.5131 -0.7496 48 1 5.9005 -0.9399 -2.2572 49 1 3.5739 -0.0276 -2.6326 50 1 4.8475 0.9307 -3.4327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:27 Heat of formation + Delta-G solvation = -75.986581 kcal Electronic energy + Delta-G solvation = -29277.306848 eV Core-core repulsion = 25466.146613 eV Total energy + Delta-G solvation = -3811.160235 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.18536 -36.68336 -36.26086 -36.03767 -35.13567 -33.31543 -32.59781 -31.07827 -29.81506 -27.47427 -27.23457 -26.73779 -24.07751 -23.78707 -22.77344 -21.87003 -20.65971 -19.88463 -18.40003 -17.29905 -16.89550 -16.40528 -15.81372 -15.65532 -15.16512 -15.02651 -14.84765 -14.47904 -14.24246 -14.00878 -13.65375 -13.46222 -13.11148 -13.02731 -12.79378 -12.53847 -12.34359 -12.22875 -11.95481 -11.88921 -11.82022 -11.57734 -11.48886 -11.32076 -11.25837 -11.15487 -11.09575 -11.00976 -10.96565 -10.92280 -10.73029 -10.48842 -10.45259 -10.32295 -9.90522 -9.61921 -8.96671 -8.43918 -8.28999 -8.07162 -6.06569 -4.09397 1.19074 3.30893 3.37663 3.42857 3.46190 3.78422 4.10159 4.44685 4.60637 4.79156 4.80257 4.84155 5.02496 5.10573 5.21691 5.26803 5.29680 5.38723 5.40404 5.42358 5.45402 5.52544 5.57026 5.62232 5.64901 5.75250 5.78753 5.83941 5.85925 5.91732 5.96669 5.98413 6.13634 6.14149 6.16991 6.24532 6.30031 6.40553 6.64416 6.79904 6.97687 7.00566 7.02178 7.21539 7.41427 7.63291 7.91562 8.21310 8.92714 9.55422 11.02121 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.003882 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.322564 B = 7210.876183 C = 8130.248457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.993 5.993 4 C 0.261 3.739 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.894 3.106 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.777 3.223 14 O -0.994 6.994 15 O -0.962 6.962 16 N -1.014 6.014 17 C 0.130 3.870 18 C 0.039 3.961 19 N -0.533 5.533 20 C 0.060 3.940 21 C -0.096 4.096 22 C -0.147 4.147 23 C -0.137 4.137 24 C 0.043 3.957 25 C 0.130 3.870 26 H 0.050 0.950 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.263 0.737 34 H 0.072 0.928 35 H 0.096 0.904 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.033 0.967 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.040 0.960 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -9.216 -8.721 18.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 N -0.835 5.835 4 C 0.139 3.861 5 C -0.564 4.564 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.787 3.213 14 O -0.978 6.978 15 O -0.946 6.946 16 N -0.853 5.853 17 C 0.004 3.996 18 C -0.091 4.091 19 N -0.258 5.258 20 C -0.068 4.068 21 C -0.115 4.115 22 C -0.205 4.205 23 C -0.194 4.194 24 C -0.087 4.087 25 C 0.004 3.996 26 H 0.069 0.931 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.114 0.886 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.517 -8.398 -9.543 18.556 hybrid contribution -0.880 -0.172 1.478 1.728 sum 12.638 -8.570 -8.066 17.269 Atomic orbital electron populations 1.22256 0.96348 1.00813 1.03691 1.20919 0.94849 0.82388 1.00781 1.57858 1.78295 1.22914 1.24459 1.19003 0.97432 0.90751 0.78959 1.21527 0.96338 1.31792 1.06726 0.91940 1.24918 0.96814 0.96005 0.96238 1.69913 1.29244 1.40775 1.13654 0.86556 0.83893 0.78808 0.78578 1.20670 1.21090 1.19701 1.02141 0.72479 0.73699 0.73000 1.93523 1.70133 1.76472 1.57711 1.93617 1.85120 1.30213 1.85616 1.58566 1.25106 1.33608 1.67983 1.21532 0.88296 0.91219 0.98586 1.22627 0.98060 0.93986 0.94382 1.61877 1.08004 1.11757 1.44157 1.22171 0.90864 0.96293 0.97441 1.21165 0.94399 0.98709 0.97231 1.21820 0.98213 1.00469 0.99955 1.21706 1.00756 1.00878 0.96050 1.22458 0.92164 0.94675 0.99397 1.21381 0.97383 0.86195 0.94657 0.93114 0.90289 0.92816 0.92435 0.91320 0.94761 0.95019 0.92770 0.90919 0.88620 0.93718 0.89599 0.94857 0.90941 0.90917 0.92815 0.92577 0.92829 0.93333 0.91386 0.93610 0.94162 0.90072 0.89456 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.83 37.15 0.37 -2.68 16 2 C 0.14 2.38 6.09 -4.04 -0.02 2.35 16 3 N -0.99 -20.36 2.86 -115.67 -0.33 -20.69 16 4 C 0.26 6.37 5.12 -5.19 -0.03 6.34 16 5 C -0.52 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.73 6.89 -52.49 -0.36 1.37 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -25.77 13.29 55.43 0.74 -25.03 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 S 2.78 55.81 6.02 -107.50 -0.65 55.16 16 14 O -0.99 -20.74 15.89 -57.17 -0.91 -21.64 16 15 O -0.96 -23.11 15.88 -57.17 -0.91 -24.02 16 16 N -1.01 -15.84 3.38 -112.97 -0.38 -16.22 16 17 C 0.13 1.87 6.56 -3.36 -0.02 1.85 16 18 C 0.04 0.48 5.48 -3.46 -0.02 0.47 16 19 N -0.53 -5.89 4.08 -234.03 -0.96 -6.85 16 20 C 0.06 0.57 4.35 -3.83 -0.02 0.56 16 21 C -0.10 -0.84 2.84 -90.62 -0.26 -1.10 16 22 C -0.15 -1.11 9.19 37.16 0.34 -0.77 16 23 C -0.14 -1.16 9.08 37.16 0.34 -0.82 16 24 C 0.04 0.46 5.62 -3.70 -0.02 0.44 16 25 C 0.13 1.64 6.53 -3.61 -0.02 1.61 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.57 6.59 -51.93 -0.34 1.23 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.86 7.61 -51.93 -0.40 0.46 16 30 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 31 H 0.03 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.03 0.79 8.00 -51.93 -0.42 0.38 16 33 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.10 1.56 7.21 -51.93 -0.37 1.18 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.96 6.07 -51.93 -0.32 0.64 16 38 H 0.03 0.34 8.12 -51.93 -0.42 -0.08 16 39 H 0.07 0.63 7.97 -51.93 -0.41 0.22 16 40 H 0.07 0.69 6.19 -51.93 -0.32 0.37 16 41 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 42 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.66 7.75 -51.93 -0.40 0.26 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.72 7.99 -51.93 -0.41 0.30 16 49 H 0.09 1.08 7.22 -51.92 -0.37 0.70 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 397.92 15.07 6.00 6.00 Total: -1.00 -32.04 397.92 -11.32 -43.36 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -9.15 Total: -1.95 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 0.25 Total: -4.81 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.93 Total: -68.79 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.82 Total: -45.67 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.65 Total: 55.16 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.04 -11.32 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.630 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds