Wall clock time and date at job start Tue Mar 31 2020 17:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47176 * 2 1 4 4 C 1.46499 * 120.00345 * 85.00030 * 3 2 1 5 5 C 1.50701 * 109.46992 * 274.99969 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65605 * 119.99873 * 265.00002 * 3 2 1 14 14 O 1.42099 * 106.40321 * 23.53841 * 13 3 2 15 15 O 1.42097 * 106.40157 * 156.45960 * 13 3 2 16 16 N 1.65600 * 107.21849 * 270.00247 * 13 3 2 17 17 C 1.47089 * 120.87617 * 269.71967 * 16 13 3 18 18 C 1.53696 * 108.27464 * 128.75423 * 17 16 13 19 19 N 1.46902 * 109.25807 * 54.08274 * 18 17 16 20 20 C 1.46898 * 111.00293 * 172.60742 * 19 18 17 21 21 C 1.52996 * 109.46955 * 294.29832 * 20 19 18 22 22 C 1.52997 * 109.47042 * 174.99633 * 21 20 19 23 23 C 1.52998 * 109.47511 * 294.99935 * 21 20 19 24 24 C 1.46904 * 111.26849 * 296.75611 * 19 18 17 25 25 C 1.47072 * 120.88731 * 89.99713 * 16 13 3 26 26 H 1.09002 * 109.47308 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47325 * 300.00280 * 1 2 3 28 28 H 1.09001 * 109.47323 * 59.99729 * 1 2 3 29 29 H 1.08998 * 109.47325 * 239.99720 * 2 1 3 30 30 H 1.09000 * 109.47454 * 119.99496 * 2 1 3 31 31 H 1.09002 * 109.47391 * 154.99959 * 4 3 2 32 32 H 1.09001 * 109.46813 * 35.00015 * 4 3 2 33 33 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 34 34 H 1.08999 * 109.62771 * 248.51902 * 17 16 13 35 35 H 1.08995 * 109.63024 * 9.10347 * 17 16 13 36 36 H 1.09000 * 109.65389 * 294.08133 * 18 17 16 37 37 H 1.08992 * 109.42206 * 173.94622 * 18 17 16 38 38 H 1.08999 * 109.46962 * 54.29934 * 20 19 18 39 39 H 1.08999 * 109.47366 * 174.30034 * 20 19 18 40 40 H 1.09006 * 109.46844 * 55.00291 * 21 20 19 41 41 H 1.09007 * 109.47272 * 60.00492 * 22 21 20 42 42 H 1.09007 * 109.47621 * 180.02562 * 22 21 20 43 43 H 1.09004 * 109.47873 * 300.00734 * 22 21 20 44 44 H 1.08997 * 109.47172 * 300.00120 * 23 21 20 45 45 H 1.09000 * 109.46607 * 60.00072 * 23 21 20 46 46 H 1.08996 * 109.46965 * 179.97438 * 23 21 20 47 47 H 1.09001 * 109.49190 * 303.14400 * 24 19 18 48 48 H 1.08994 * 109.49517 * 183.06018 * 24 19 18 49 49 H 1.09008 * 109.62445 * 350.89956 * 25 16 13 50 50 H 1.09003 * 109.63062 * 111.47195 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4674 2.7943 8 7 1.7680 3.6310 3.5749 9 14 -0.9168 4.2355 3.2553 10 1 -1.6961 3.2797 4.0826 11 1 -0.6798 5.4809 4.0289 12 1 -1.6775 4.5567 2.0212 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4415 -2.4449 15 8 2.3056 3.5186 -1.1999 16 7 4.0143 1.8136 -1.7138 17 6 5.0570 2.7262 -1.2202 18 6 6.1005 1.8969 -0.4551 19 7 6.5841 0.8110 -1.3182 20 6 7.7072 0.1009 -0.6918 21 6 8.9058 1.0445 -0.5753 22 6 10.0326 0.3458 0.1883 23 6 9.3957 1.4220 -1.9747 24 6 5.5001 -0.1186 -1.6630 25 6 4.4323 0.6249 -2.4724 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.9080 2.8919 1.1512 32 1 2.4690 1.4183 2.0480 33 1 1.6882 4.1509 4.3900 34 1 5.5312 3.2300 -2.0625 35 1 4.6119 3.4635 -0.5522 36 1 5.6471 1.4742 0.4415 37 1 6.9364 2.5370 -0.1732 38 1 7.4138 -0.2382 0.3017 39 1 7.9799 -0.7591 -1.3034 40 1 8.6080 1.9457 -0.0391 41 1 10.3304 -0.5554 -0.3478 42 1 10.8865 1.0182 0.2717 43 1 9.6837 0.0768 1.1853 44 1 9.6935 0.5209 -2.5108 45 1 8.5929 1.9199 -2.5186 46 1 10.2494 2.0946 -1.8916 47 1 5.0550 -0.5131 -0.7496 48 1 5.9005 -0.9399 -2.2572 49 1 3.5739 -0.0276 -2.6326 50 1 4.8475 0.9307 -3.4327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907235.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:26 Heat of formation + Delta-G solvation = -97.830274 kcal Electronic energy + Delta-G solvation = -29278.254062 eV Core-core repulsion = 25466.146613 eV Total energy + Delta-G solvation = -3812.107449 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.14385 -38.36945 -37.71566 -37.16321 -36.84786 -34.65576 -34.25903 -32.12575 -31.44824 -28.71890 -28.39056 -27.86387 -25.00469 -24.88532 -24.60926 -23.43093 -21.73391 -20.66507 -19.76938 -18.89330 -18.61159 -18.26159 -17.29137 -16.67156 -16.52984 -16.09189 -15.89005 -15.85432 -15.44817 -15.23098 -14.97576 -14.76123 -14.60063 -14.26980 -14.06292 -13.76526 -13.68504 -13.53466 -13.20745 -13.14752 -13.05723 -13.00571 -12.88576 -12.85614 -12.79267 -12.69076 -12.34145 -12.29729 -12.25167 -12.19808 -11.90459 -11.70724 -11.67135 -11.62995 -11.48156 -11.21704 -10.58083 -10.15664 -9.80036 -9.23008 -8.19474 -6.29182 -0.38225 1.37183 1.39700 1.49850 1.99574 2.39289 2.55303 2.91127 3.11659 3.34307 3.66127 3.85967 3.94134 4.06008 4.13003 4.26944 4.30949 4.31666 4.35073 4.42979 4.48612 4.49902 4.64700 4.69307 4.72974 4.74907 4.84324 4.88322 4.90742 4.94395 4.95697 5.06709 5.09363 5.14031 5.15175 5.17541 5.20602 5.35083 5.44475 5.51071 5.52048 5.60525 5.62121 5.73529 5.98700 6.07051 6.13004 6.16825 6.78289 7.38747 8.88229 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014287 B = 0.003882 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.322564 B = 7210.876183 C = 8130.248457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 N -0.998 5.998 4 C 0.279 3.721 5 C -0.540 4.540 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.924 5.924 9 Si 0.950 3.050 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.276 1.276 13 S 2.788 3.212 14 O -1.003 7.003 15 O -1.009 7.009 16 N -1.007 6.007 17 C 0.127 3.873 18 C 0.047 3.953 19 N -0.531 5.531 20 C 0.062 3.938 21 C -0.096 4.096 22 C -0.143 4.143 23 C -0.131 4.131 24 C 0.045 3.955 25 C 0.123 3.877 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.013 0.987 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.026 0.974 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.049 0.951 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.032 0.968 48 H 0.112 0.888 49 H 0.092 0.908 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.857 -10.920 -9.581 20.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.839 5.839 4 C 0.155 3.845 5 C -0.579 4.579 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.564 5.564 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.201 1.201 13 S 2.798 3.202 14 O -0.987 6.987 15 O -0.993 6.993 16 N -0.848 5.848 17 C 0.001 3.999 18 C -0.082 4.082 19 N -0.256 5.256 20 C -0.065 4.065 21 C -0.115 4.115 22 C -0.201 4.201 23 C -0.189 4.189 24 C -0.085 4.085 25 C -0.002 4.002 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.117 0.883 38 H 0.044 0.956 39 H 0.107 0.893 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.130 0.870 49 H 0.110 0.890 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 14.484 -10.131 -10.413 20.515 hybrid contribution -1.112 0.302 1.669 2.028 sum 13.372 -9.829 -8.744 18.758 Atomic orbital electron populations 1.22230 0.96656 1.02566 1.01498 1.21220 0.94696 0.80956 1.02881 1.57758 1.79137 1.24002 1.22981 1.18528 0.95486 0.90147 0.80316 1.21837 0.97232 1.32088 1.06749 0.92805 1.25671 0.99992 0.96524 0.96336 1.70000 1.30867 1.41455 1.14069 0.85678 0.80211 0.78384 0.78203 1.19150 1.20468 1.20096 1.01563 0.73379 0.72566 0.72670 1.93498 1.71204 1.76297 1.57681 1.93551 1.86304 1.33264 1.86167 1.58218 1.23525 1.34979 1.68121 1.21625 0.88175 0.91110 0.98993 1.22496 0.97704 0.94565 0.93462 1.61909 1.08324 1.11695 1.43633 1.22225 0.90339 0.96756 0.97226 1.21158 0.94537 0.98241 0.97531 1.21785 0.97841 1.00816 0.99670 1.21648 1.00447 1.01165 0.95597 1.22499 0.91697 0.95009 0.99248 1.21706 0.98255 0.85086 0.95184 0.89429 0.93019 0.94337 0.89444 0.90006 0.96949 0.95835 0.92518 0.89168 0.91237 0.95751 0.88289 0.95611 0.89331 0.92021 0.91907 0.92126 0.93183 0.92607 0.92588 0.93165 0.94977 0.87027 0.88956 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.92 9.83 71.98 0.71 -5.21 16 2 C 0.13 4.30 6.09 86.38 0.53 4.83 16 3 N -1.00 -41.41 2.86 -519.85 -1.48 -42.90 16 4 C 0.28 14.08 5.12 85.63 0.44 14.52 16 5 C -0.54 -30.42 8.41 25.60 0.22 -30.21 16 6 H 0.05 3.06 6.89 -2.91 -0.02 3.04 16 7 C 0.01 0.80 5.46 84.66 0.46 1.26 16 8 N -0.92 -54.02 13.29 21.45 0.28 -53.73 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 13 S 2.79 113.36 6.02 -56.49 -0.34 113.02 16 14 O -1.00 -41.34 15.89 -128.00 -2.03 -43.37 16 15 O -1.01 -50.32 15.88 -128.00 -2.03 -52.35 16 16 N -1.01 -31.01 3.38 -511.32 -1.73 -32.74 16 17 C 0.13 3.68 6.56 86.50 0.57 4.24 16 18 C 0.05 1.17 5.48 86.54 0.47 1.64 16 19 N -0.53 -10.69 4.08 -894.33 -3.65 -14.34 16 20 C 0.06 1.04 4.35 86.30 0.38 1.42 16 21 C -0.10 -1.50 2.84 -10.80 -0.03 -1.53 16 22 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 23 C -0.13 -1.94 9.08 71.98 0.65 -1.29 16 24 C 0.04 0.86 5.62 86.38 0.49 1.35 16 25 C 0.12 2.83 6.53 86.35 0.56 3.39 16 26 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.05 2.06 6.59 -2.39 -0.02 2.04 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 2.42 7.61 -2.39 -0.02 2.40 16 30 H 0.08 2.54 8.00 -2.39 -0.02 2.52 16 31 H 0.01 0.68 7.61 -2.39 -0.02 0.67 16 32 H 0.02 1.22 8.00 -2.39 -0.02 1.20 16 33 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 34 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.07 2.39 7.21 -2.39 -0.02 2.38 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 2.17 6.07 -2.39 -0.01 2.15 16 38 H 0.03 0.48 8.12 -2.39 -0.02 0.46 16 39 H 0.09 1.24 7.97 -2.39 -0.02 1.22 16 40 H 0.06 1.10 6.19 -2.38 -0.01 1.09 16 41 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 42 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.06 0.97 7.75 -2.39 -0.02 0.95 16 46 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.11 1.53 7.99 -2.39 -0.02 1.51 16 49 H 0.09 2.05 7.22 -2.38 -0.02 2.04 16 50 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -69.86 397.92 -1.97 -71.83 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.89 Total: 14.44 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 6.10 Total: -6.81 kcal Atomic # 7 Polarization: -137.14 SS G_CDS: -6.58 Total: -143.71 kcal Atomic # 8 Polarization: -91.66 SS G_CDS: -4.07 Total: -95.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 113.36 SS G_CDS: -0.34 Total: 113.02 kcal Total: -69.86 -1.97 -71.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907235.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.997 kcal (2) G-P(sol) polarization free energy of solvation -69.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds