Wall clock time and date at job start Tue Mar 31 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47041 * 2 1 4 4 C 1.46499 * 120.00291 * 273.59295 * 3 2 1 5 5 C 1.50696 * 109.47228 * 280.22145 * 4 3 2 6 6 H 1.08005 * 119.99727 * 5.06452 * 5 4 3 7 7 C 1.37878 * 120.00382 * 185.06146 * 5 4 3 8 8 N 1.31515 * 119.99704 * 6.36563 * 7 5 4 9 9 Si 1.86802 * 120.00109 * 186.36765 * 7 5 4 10 10 H 1.48497 * 109.47086 * 94.72361 * 9 7 5 11 11 H 1.48500 * 109.46731 * 214.72081 * 9 7 5 12 12 H 1.48496 * 109.47190 * 334.72086 * 9 7 5 13 13 S 1.65603 * 119.99888 * 93.58965 * 3 2 1 14 14 O 1.42098 * 106.40249 * 333.75875 * 13 3 2 15 15 O 1.42098 * 106.40369 * 200.83431 * 13 3 2 16 16 N 1.65601 * 107.21614 * 87.29692 * 13 3 2 17 17 C 1.46494 * 120.00158 * 66.81063 * 16 13 3 18 18 H 1.09000 * 109.47392 * 335.27771 * 17 16 13 19 19 C 1.52997 * 109.47353 * 95.28022 * 17 16 13 20 20 C 1.52998 * 109.47734 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46888 * 300.00104 * 20 19 17 22 22 C 1.53003 * 109.47496 * 59.99341 * 21 20 19 23 23 H 1.09000 * 109.46743 * 60.00478 * 22 21 20 24 24 N 1.46903 * 109.47023 * 180.02562 * 22 21 20 25 25 C 1.46896 * 111.00240 * 295.00233 * 24 22 21 26 26 C 1.46902 * 110.99792 * 58.95820 * 24 22 21 27 27 C 1.52998 * 109.47238 * 300.00361 * 22 21 20 28 28 H 1.09007 * 109.47134 * 65.06730 * 1 2 3 29 29 H 1.09001 * 109.46990 * 185.06333 * 1 2 3 30 30 H 1.09001 * 109.47332 * 305.06435 * 1 2 3 31 31 H 1.09003 * 109.47143 * 240.00147 * 2 1 3 32 32 H 1.08993 * 109.47261 * 120.00150 * 2 1 3 33 33 H 1.08998 * 109.47209 * 40.22222 * 4 3 2 34 34 H 1.09003 * 109.47269 * 160.21994 * 4 3 2 35 35 H 0.97000 * 119.99667 * 180.02562 * 8 7 5 36 36 H 0.97004 * 120.00052 * 246.81181 * 16 13 3 37 37 H 1.09001 * 109.47554 * 59.99338 * 19 17 16 38 38 H 1.09010 * 109.46505 * 300.00170 * 19 17 16 39 39 H 1.08998 * 109.47407 * 179.97438 * 20 19 17 40 40 H 1.09010 * 109.46934 * 59.99143 * 20 19 17 41 41 H 1.09008 * 109.46965 * 299.99604 * 21 20 19 42 42 H 1.09002 * 109.47389 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47093 * 179.97438 * 25 24 22 44 44 H 1.09004 * 109.46900 * 300.00250 * 25 24 22 45 45 H 1.09002 * 109.46902 * 59.99978 * 25 24 22 46 46 H 1.08995 * 109.46812 * 296.04169 * 26 24 22 47 47 H 1.08997 * 109.47367 * 56.04189 * 26 24 22 48 48 H 1.09004 * 109.46785 * 176.04481 * 26 24 22 49 49 H 1.09001 * 109.47120 * 179.97438 * 27 22 21 50 50 H 1.09000 * 109.47350 * 299.99746 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1875 2.0984 -1.2662 5 6 3.4810 1.6760 -1.9138 6 1 4.0734 0.8878 -1.4729 7 6 3.9081 2.2955 -3.0691 8 7 3.2548 3.3365 -3.5372 9 14 5.4147 1.6561 -3.9696 10 1 4.9905 0.7211 -5.0424 11 1 6.1532 2.7961 -4.5701 12 1 6.2981 0.9432 -3.0123 13 16 2.3789 2.1319 1.4314 14 8 1.5823 1.5033 2.4260 15 8 2.3403 3.5287 1.1728 16 7 3.9531 1.7668 1.7933 17 6 5.0363 2.2791 0.9505 18 1 4.6539 2.4806 -0.0501 19 6 5.5861 3.5719 1.5563 20 6 6.7170 4.1073 0.6758 21 6 7.8355 3.0667 0.5936 22 6 7.2858 1.7737 -0.0123 23 1 6.9030 1.9754 -1.0127 24 7 8.3597 0.7745 -0.0906 25 6 9.4109 1.2033 -1.0228 26 6 8.9173 0.4955 1.2395 27 6 6.1550 1.2384 0.8683 28 1 -0.3634 0.4332 -0.9319 29 1 -0.3633 -1.0237 0.0907 30 1 -0.3634 0.5904 0.8411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3554 1.8646 -1.9302 34 1 2.2100 3.1714 -1.0758 35 1 3.5550 3.7721 -4.3502 36 1 4.1580 1.2137 2.5634 37 1 5.9685 3.3704 2.5570 38 1 4.7892 4.3134 1.6145 39 1 7.1083 5.0286 1.1072 40 1 6.3341 4.3089 -0.3247 41 1 8.2185 2.8650 1.5940 42 1 8.6411 3.4479 -0.0341 43 1 10.1935 0.4456 -1.0614 44 1 8.9833 1.3356 -2.0167 45 1 9.8361 2.1472 -0.6816 46 1 9.3868 1.3971 1.6329 47 1 8.1178 0.1801 1.9098 48 1 9.6611 -0.2976 1.1626 49 1 5.7630 0.3175 0.4364 50 1 6.5378 1.0367 1.8687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:27 Heat of formation + Delta-G solvation = -86.537894 kcal Electronic energy + Delta-G solvation = -30161.990425 eV Core-core repulsion = 26350.372651 eV Total energy + Delta-G solvation = -3811.617774 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.45953 -36.67264 -36.18502 -35.92249 -35.13976 -33.16435 -32.72951 -29.92640 -29.83626 -28.25664 -27.50475 -26.60594 -24.15078 -23.13898 -22.16731 -21.69940 -20.78350 -19.49711 -18.53705 -17.04661 -16.80323 -16.47817 -16.16429 -15.35474 -15.09296 -14.80243 -14.49511 -14.33911 -14.18404 -13.99206 -13.73454 -13.33647 -13.17946 -12.86303 -12.58638 -12.28196 -12.09917 -12.07541 -11.95741 -11.74468 -11.68223 -11.63659 -11.39947 -11.37840 -11.24831 -11.10655 -11.04859 -10.83135 -10.71143 -10.53841 -10.46463 -10.34957 -10.22910 -9.99631 -9.95327 -9.72502 -8.96847 -8.50724 -8.14601 -8.03542 -6.13808 -4.19226 1.36445 3.22643 3.31917 3.35321 3.57443 4.06234 4.21915 4.34391 4.90274 4.97875 5.11815 5.15939 5.17861 5.26321 5.28845 5.42497 5.45274 5.45705 5.54608 5.58364 5.67974 5.75890 5.76440 5.81452 5.85112 5.89914 5.93461 5.95820 6.02335 6.13748 6.21996 6.24696 6.35205 6.36590 6.47978 6.50904 6.66882 6.69678 6.73965 6.88032 7.15228 7.17790 7.33140 7.40368 7.51298 7.70949 7.84618 8.14906 8.86468 9.45765 10.93391 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.006199 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.096179 B = 4515.510296 C = 5845.138595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.241 3.759 5 C -0.540 4.540 6 H 0.067 0.933 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.879 3.121 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.260 1.260 13 S 2.783 3.217 14 O -1.004 7.004 15 O -0.978 6.978 16 N -1.124 6.124 17 C 0.144 3.856 18 H 0.127 0.873 19 C -0.134 4.134 20 C -0.114 4.114 21 C -0.151 4.151 22 C 0.083 3.917 23 H 0.094 0.906 24 N -0.538 5.538 25 C 0.022 3.978 26 C 0.018 3.982 27 C -0.107 4.107 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.058 0.942 35 H 0.264 0.736 36 H 0.403 0.597 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.028 0.972 46 H 0.026 0.974 47 H 0.071 0.929 48 H 0.061 0.939 49 H 0.078 0.922 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.356 -4.312 8.183 12.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.119 3.881 5 C -0.579 4.579 6 H 0.085 0.915 7 C -0.135 4.135 8 N -0.521 5.521 9 Si 0.706 3.294 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.184 1.184 13 S 2.791 3.209 14 O -0.988 6.988 15 O -0.962 6.962 16 N -0.880 5.880 17 C 0.036 3.964 18 H 0.145 0.855 19 C -0.173 4.173 20 C -0.153 4.153 21 C -0.190 4.190 22 C -0.026 4.026 23 H 0.112 0.888 24 N -0.261 5.261 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.146 4.146 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.235 0.765 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.096 0.904 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 7.505 -3.955 8.192 11.793 hybrid contribution 1.633 -0.078 -0.281 1.659 sum 9.139 -4.032 7.911 12.742 Atomic orbital electron populations 1.22214 0.97066 1.01290 1.02339 1.20942 0.93492 0.82950 1.02079 1.57725 1.78897 1.22974 1.23749 1.19249 0.96943 0.92921 0.79034 1.21550 1.06835 1.20048 1.09476 0.91523 1.24934 0.96954 0.94378 0.97248 1.69954 1.40383 1.19594 1.22198 0.86785 0.83297 0.78768 0.80577 1.20752 1.21271 1.18428 1.01821 0.72625 0.73802 0.72628 1.93538 1.67488 1.78146 1.59627 1.93578 1.86374 1.30922 1.85291 1.56076 1.24929 1.67512 1.39492 1.21056 0.87192 0.91881 0.96246 0.85540 1.22044 0.98533 0.98145 0.98568 1.21416 0.95177 0.97350 1.01310 1.22232 0.98751 0.97052 1.00969 1.21794 0.91184 0.88740 1.00912 0.88796 1.62193 1.11000 1.43695 1.09179 1.22395 0.94390 0.98772 0.97101 1.22455 0.99790 0.99758 0.90996 1.21771 0.94463 0.99251 0.99101 0.92223 0.92459 0.92593 0.90086 0.92171 0.95042 0.92424 0.92608 0.76531 0.92577 0.90532 0.92108 0.90842 0.92014 0.92158 0.91772 0.91366 0.95395 0.95532 0.91067 0.92002 0.90376 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.27 6.00 -4.04 -0.02 2.24 16 3 N -0.99 -19.91 2.84 -115.67 -0.33 -20.24 16 4 C 0.24 5.73 5.35 -5.20 -0.03 5.70 16 5 C -0.54 -13.18 7.09 -34.44 -0.24 -13.43 16 6 H 0.07 1.58 7.71 -52.48 -0.40 1.17 16 7 C 0.07 1.76 5.45 -17.82 -0.10 1.66 16 8 N -0.88 -24.22 13.28 55.43 0.74 -23.49 16 9 Si 0.88 19.60 29.54 -169.99 -5.02 14.58 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.26 -5.57 6.84 56.52 0.39 -5.18 16 13 S 2.78 54.63 6.01 -107.50 -0.65 53.99 16 14 O -1.00 -20.47 17.03 -57.17 -0.97 -21.44 16 15 O -0.98 -22.42 15.86 -57.17 -0.91 -23.33 16 16 N -1.12 -18.16 5.53 -4.89 -0.03 -18.19 16 17 C 0.14 2.40 2.65 -67.93 -0.18 2.22 16 18 H 0.13 2.56 5.27 -51.93 -0.27 2.29 16 19 C -0.13 -2.07 5.53 -26.73 -0.15 -2.22 16 20 C -0.11 -1.63 5.92 -26.73 -0.16 -1.79 16 21 C -0.15 -1.98 4.51 -26.73 -0.12 -2.10 16 22 C 0.08 1.23 2.23 -67.71 -0.15 1.08 16 23 H 0.09 1.67 7.87 -51.93 -0.41 1.26 16 24 N -0.54 -7.36 5.01 -243.18 -1.22 -8.57 16 25 C 0.02 0.27 9.31 60.06 0.56 0.83 16 26 C 0.02 0.20 8.79 60.07 0.53 0.73 16 27 C -0.11 -1.57 4.54 -26.73 -0.12 -1.70 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 31 H 0.08 1.38 8.08 -51.93 -0.42 0.96 16 32 H 0.06 0.93 7.73 -51.93 -0.40 0.52 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.53 6.78 -51.93 -0.35 1.18 16 35 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.40 5.35 8.84 -34.47 -0.30 5.05 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.33 7.67 -51.92 -0.40 0.93 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 41 H 0.06 0.74 6.47 -51.92 -0.34 0.41 16 42 H 0.06 0.76 6.52 -51.93 -0.34 0.42 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.03 0.31 6.44 -51.93 -0.33 -0.02 16 46 H 0.03 0.28 6.51 -51.93 -0.34 -0.06 16 47 H 0.07 0.77 6.13 -51.93 -0.32 0.45 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 50 H 0.06 0.76 6.34 -51.93 -0.33 0.43 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -29.56 389.78 -11.06 -40.62 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.75 Total: 9.29 kcal Atomic # 6 Polarization: -9.29 SS G_CDS: 0.20 Total: -9.09 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -0.84 Total: -70.49 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -1.88 Total: -44.77 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.65 Total: 53.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -29.56 -11.06 -40.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.916 kcal (2) G-P(sol) polarization free energy of solvation -29.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds