Wall clock time and date at job start Tue Mar 31 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47041 * 2 1 4 4 C 1.46499 * 120.00291 * 273.59295 * 3 2 1 5 5 C 1.50696 * 109.47228 * 280.22145 * 4 3 2 6 6 H 1.08005 * 119.99727 * 5.06452 * 5 4 3 7 7 C 1.37878 * 120.00382 * 185.06146 * 5 4 3 8 8 N 1.31515 * 119.99704 * 6.36563 * 7 5 4 9 9 Si 1.86802 * 120.00109 * 186.36765 * 7 5 4 10 10 H 1.48497 * 109.47086 * 94.72361 * 9 7 5 11 11 H 1.48500 * 109.46731 * 214.72081 * 9 7 5 12 12 H 1.48496 * 109.47190 * 334.72086 * 9 7 5 13 13 S 1.65603 * 119.99888 * 93.58965 * 3 2 1 14 14 O 1.42098 * 106.40249 * 333.75875 * 13 3 2 15 15 O 1.42098 * 106.40369 * 200.83431 * 13 3 2 16 16 N 1.65601 * 107.21614 * 87.29692 * 13 3 2 17 17 C 1.46494 * 120.00158 * 66.81063 * 16 13 3 18 18 H 1.09000 * 109.47392 * 335.27771 * 17 16 13 19 19 C 1.52997 * 109.47353 * 95.28022 * 17 16 13 20 20 C 1.52998 * 109.47734 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46888 * 300.00104 * 20 19 17 22 22 C 1.53003 * 109.47496 * 59.99341 * 21 20 19 23 23 H 1.09000 * 109.46743 * 60.00478 * 22 21 20 24 24 N 1.46903 * 109.47023 * 180.02562 * 22 21 20 25 25 C 1.46896 * 111.00240 * 295.00233 * 24 22 21 26 26 C 1.46902 * 110.99792 * 58.95820 * 24 22 21 27 27 C 1.52998 * 109.47238 * 300.00361 * 22 21 20 28 28 H 1.09007 * 109.47134 * 65.06730 * 1 2 3 29 29 H 1.09001 * 109.46990 * 185.06333 * 1 2 3 30 30 H 1.09001 * 109.47332 * 305.06435 * 1 2 3 31 31 H 1.09003 * 109.47143 * 240.00147 * 2 1 3 32 32 H 1.08993 * 109.47261 * 120.00150 * 2 1 3 33 33 H 1.08998 * 109.47209 * 40.22222 * 4 3 2 34 34 H 1.09003 * 109.47269 * 160.21994 * 4 3 2 35 35 H 0.97000 * 119.99667 * 180.02562 * 8 7 5 36 36 H 0.97004 * 120.00052 * 246.81181 * 16 13 3 37 37 H 1.09001 * 109.47554 * 59.99338 * 19 17 16 38 38 H 1.09010 * 109.46505 * 300.00170 * 19 17 16 39 39 H 1.08998 * 109.47407 * 179.97438 * 20 19 17 40 40 H 1.09010 * 109.46934 * 59.99143 * 20 19 17 41 41 H 1.09008 * 109.46965 * 299.99604 * 21 20 19 42 42 H 1.09002 * 109.47389 * 179.97438 * 21 20 19 43 43 H 1.08994 * 109.47093 * 179.97438 * 25 24 22 44 44 H 1.09004 * 109.46900 * 300.00250 * 25 24 22 45 45 H 1.09002 * 109.46902 * 59.99978 * 25 24 22 46 46 H 1.08995 * 109.46812 * 296.04169 * 26 24 22 47 47 H 1.08997 * 109.47367 * 56.04189 * 26 24 22 48 48 H 1.09004 * 109.46785 * 176.04481 * 26 24 22 49 49 H 1.09001 * 109.47120 * 179.97438 * 27 22 21 50 50 H 1.09000 * 109.47350 * 299.99746 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1875 2.0984 -1.2662 5 6 3.4810 1.6760 -1.9138 6 1 4.0734 0.8878 -1.4729 7 6 3.9081 2.2955 -3.0691 8 7 3.2548 3.3365 -3.5372 9 14 5.4147 1.6561 -3.9696 10 1 4.9905 0.7211 -5.0424 11 1 6.1532 2.7961 -4.5701 12 1 6.2981 0.9432 -3.0123 13 16 2.3789 2.1319 1.4314 14 8 1.5823 1.5033 2.4260 15 8 2.3403 3.5287 1.1728 16 7 3.9531 1.7668 1.7933 17 6 5.0363 2.2791 0.9505 18 1 4.6539 2.4806 -0.0501 19 6 5.5861 3.5719 1.5563 20 6 6.7170 4.1073 0.6758 21 6 7.8355 3.0667 0.5936 22 6 7.2858 1.7737 -0.0123 23 1 6.9030 1.9754 -1.0127 24 7 8.3597 0.7745 -0.0906 25 6 9.4109 1.2033 -1.0228 26 6 8.9173 0.4955 1.2395 27 6 6.1550 1.2384 0.8683 28 1 -0.3634 0.4332 -0.9319 29 1 -0.3633 -1.0237 0.0907 30 1 -0.3634 0.5904 0.8411 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.3554 1.8646 -1.9302 34 1 2.2100 3.1714 -1.0758 35 1 3.5550 3.7721 -4.3502 36 1 4.1580 1.2137 2.5634 37 1 5.9685 3.3704 2.5570 38 1 4.7892 4.3134 1.6145 39 1 7.1083 5.0286 1.1072 40 1 6.3341 4.3089 -0.3247 41 1 8.2185 2.8650 1.5940 42 1 8.6411 3.4479 -0.0341 43 1 10.1935 0.4456 -1.0614 44 1 8.9833 1.3356 -2.0167 45 1 9.8361 2.1472 -0.6816 46 1 9.3868 1.3971 1.6329 47 1 8.1178 0.1801 1.9098 48 1 9.6611 -0.2976 1.1626 49 1 5.7630 0.3175 0.4364 50 1 6.5378 1.0367 1.8687 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336909840.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:26 Heat of formation + Delta-G solvation = -108.220862 kcal Electronic energy + Delta-G solvation = -30162.930669 eV Core-core repulsion = 26350.372651 eV Total energy + Delta-G solvation = -3812.558018 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59907 -38.29581 -37.68567 -37.28361 -36.83984 -34.65851 -34.39654 -31.50127 -31.00180 -29.45646 -28.49400 -28.36493 -25.18193 -24.90262 -23.37760 -23.27225 -21.98528 -20.79628 -19.97668 -18.64681 -18.47565 -18.21018 -17.57447 -16.92403 -16.39735 -16.11165 -15.87806 -15.50793 -15.32745 -15.25251 -15.16040 -14.78845 -14.59316 -14.34967 -13.81718 -13.73093 -13.62156 -13.49636 -13.33406 -13.14085 -13.07803 -12.97553 -12.83562 -12.72887 -12.69501 -12.65106 -12.49729 -12.27649 -12.10427 -12.08018 -11.87153 -11.73609 -11.56848 -11.55243 -11.31500 -11.23218 -10.53308 -10.32765 -9.74404 -9.12181 -8.13234 -6.23566 -0.23408 1.42163 1.46210 1.56776 2.03661 2.44893 2.65748 3.05033 3.18320 3.49738 3.78659 3.83848 4.00891 4.02435 4.18585 4.19823 4.35498 4.42496 4.45003 4.49680 4.53046 4.56334 4.61631 4.67934 4.69674 4.73424 4.76483 4.84898 4.97359 5.01163 5.01892 5.07636 5.15284 5.18070 5.21112 5.26979 5.31264 5.33085 5.43169 5.46477 5.56229 5.59374 5.81141 5.95450 6.14044 6.16237 6.22030 6.32240 6.87933 7.44762 8.94627 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010445 B = 0.006199 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.096179 B = 4515.510296 C = 5845.138595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.257 3.743 5 C -0.528 4.528 6 H 0.075 0.925 7 C 0.021 3.979 8 N -0.924 5.924 9 Si 0.938 3.062 10 H -0.282 1.282 11 H -0.290 1.290 12 H -0.246 1.246 13 S 2.796 3.204 14 O -1.008 7.008 15 O -1.015 7.015 16 N -1.107 6.107 17 C 0.142 3.858 18 H 0.088 0.912 19 C -0.132 4.132 20 C -0.113 4.113 21 C -0.141 4.141 22 C 0.083 3.917 23 H 0.056 0.944 24 N -0.554 5.554 25 C 0.021 3.979 26 C 0.018 3.982 27 C -0.097 4.097 28 H 0.048 0.952 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.015 0.985 34 H 0.023 0.977 35 H 0.263 0.737 36 H 0.421 0.579 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.080 0.920 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.049 0.951 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.678 -6.226 9.987 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.133 3.867 5 C -0.567 4.567 6 H 0.093 0.907 7 C -0.179 4.179 8 N -0.564 5.564 9 Si 0.763 3.237 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.170 1.170 13 S 2.804 3.196 14 O -0.993 6.993 15 O -0.999 6.999 16 N -0.868 5.868 17 C 0.035 3.965 18 H 0.106 0.894 19 C -0.171 4.171 20 C -0.152 4.152 21 C -0.180 4.180 22 C -0.026 4.026 23 H 0.075 0.925 24 N -0.277 5.277 25 C -0.127 4.127 26 C -0.130 4.130 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.033 0.967 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.256 0.744 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.068 0.932 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.824 -5.908 10.028 15.231 hybrid contribution 0.888 0.493 -0.782 1.282 sum 10.712 -5.415 9.246 15.151 Atomic orbital electron populations 1.22202 0.96058 1.03137 1.01290 1.21230 0.94471 0.81340 1.03296 1.57628 1.79574 1.24112 1.22366 1.18790 0.96284 0.91390 0.80235 1.21721 1.06629 1.19395 1.08947 0.90706 1.25641 0.99514 0.94499 0.98208 1.70082 1.42329 1.21174 1.22827 0.85847 0.80414 0.77991 0.79406 1.20844 1.21660 1.16985 1.01261 0.73215 0.72904 0.72224 1.93523 1.68249 1.77978 1.59506 1.93535 1.87134 1.33485 1.85740 1.55664 1.23484 1.67654 1.40025 1.20989 0.87577 0.93474 0.94478 0.89439 1.22019 0.98189 0.96690 1.00222 1.21406 0.95360 0.98858 0.99553 1.22149 0.98106 0.95536 1.02177 1.21643 0.91862 0.90116 0.98997 0.92521 1.62164 1.11366 1.43250 1.10921 1.22422 0.94345 0.99986 0.95984 1.22524 1.00220 1.00695 0.89528 1.21684 0.93619 0.97687 1.00668 0.93283 0.89111 0.93679 0.89958 0.89776 0.96711 0.95902 0.92799 0.74388 0.89657 0.93134 0.90097 0.93852 0.89749 0.91460 0.89935 0.93207 0.94365 0.94469 0.90693 0.90667 0.91584 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 4.08 6.00 86.38 0.52 4.59 16 3 N -1.00 -40.49 2.84 -519.86 -1.48 -41.97 16 4 C 0.26 12.73 5.35 85.63 0.46 13.19 16 5 C -0.53 -26.42 7.09 25.60 0.18 -26.24 16 6 H 0.07 3.56 7.71 -2.91 -0.02 3.54 16 7 C 0.02 1.12 5.45 84.65 0.46 1.59 16 8 N -0.92 -52.77 13.28 21.45 0.28 -52.48 16 9 Si 0.94 41.22 29.54 68.60 2.03 43.25 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.25 -10.18 6.84 99.48 0.68 -9.50 16 13 S 2.80 110.16 6.01 -56.49 -0.34 109.82 16 14 O -1.01 -40.14 17.03 -128.00 -2.18 -42.32 16 15 O -1.02 -48.25 15.86 -128.00 -2.03 -50.28 16 16 N -1.11 -34.54 5.53 -169.39 -0.94 -35.47 16 17 C 0.14 4.67 2.65 44.99 0.12 4.79 16 18 H 0.09 3.64 5.27 -2.39 -0.01 3.63 16 19 C -0.13 -3.96 5.53 30.59 0.17 -3.79 16 20 C -0.11 -3.14 5.92 30.59 0.18 -2.96 16 21 C -0.14 -3.35 4.51 30.59 0.14 -3.21 16 22 C 0.08 2.34 2.23 44.92 0.10 2.44 16 23 H 0.06 2.01 7.87 -2.39 -0.02 1.99 16 24 N -0.55 -13.65 5.01 -923.28 -4.62 -18.28 16 25 C 0.02 0.46 9.31 127.69 1.19 1.65 16 26 C 0.02 0.32 8.79 127.69 1.12 1.45 16 27 C -0.10 -2.67 4.54 30.60 0.14 -2.53 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 1.47 7.93 -2.39 -0.02 1.45 16 31 H 0.08 2.73 8.08 -2.39 -0.02 2.71 16 32 H 0.08 2.40 7.73 -2.39 -0.02 2.38 16 33 H 0.01 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.02 1.30 6.78 -2.39 -0.02 1.28 16 35 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 36 H 0.42 10.11 8.84 -96.74 -0.86 9.25 16 37 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.78 7.67 -2.38 -0.02 1.76 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.08 1.66 6.47 -2.38 -0.02 1.65 16 42 H 0.07 1.52 6.52 -2.39 -0.02 1.51 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.04 0.75 6.44 -2.39 -0.02 0.74 16 46 H 0.04 0.60 6.51 -2.39 -0.02 0.59 16 47 H 0.07 1.29 6.13 -2.39 -0.01 1.28 16 48 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.09 1.92 6.34 -2.39 -0.02 1.90 16 Total: -1.00 -65.94 389.78 -3.72 -69.66 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.04 Total: 31.54 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 5.51 Total: -13.46 kcal Atomic # 7 Polarization: -141.45 SS G_CDS: -6.75 Total: -148.20 kcal Atomic # 8 Polarization: -88.39 SS G_CDS: -4.21 Total: -92.60 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -0.34 Total: 109.82 kcal Total: -65.94 -3.72 -69.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909840.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.565 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds