Wall clock time and date at job start Tue Mar 31 2020 17:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47296 * 2 1 4 4 C 1.46505 * 119.99594 * 85.00064 * 3 2 1 5 5 C 1.50703 * 109.47064 * 85.00244 * 4 3 2 6 6 H 1.07996 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 S 1.65591 * 120.00456 * 265.00172 * 3 2 1 14 14 O 1.42104 * 106.40084 * 23.54037 * 13 3 2 15 15 O 1.42103 * 106.40538 * 156.45682 * 13 3 2 16 16 N 1.65597 * 107.22042 * 269.99973 * 13 3 2 17 17 C 1.46500 * 119.99975 * 64.99656 * 16 13 3 18 18 H 1.09004 * 109.47483 * 335.00059 * 17 16 13 19 19 C 1.53005 * 109.47063 * 95.00214 * 17 16 13 20 20 C 1.52995 * 109.47154 * 60.00077 * 19 17 16 21 21 C 1.53001 * 109.47205 * 59.99748 * 20 19 17 22 22 C 1.52998 * 109.47550 * 300.00106 * 21 20 19 23 23 H 1.08994 * 109.46943 * 300.00013 * 22 21 20 24 24 N 1.46896 * 109.47270 * 179.97438 * 22 21 20 25 25 C 1.46890 * 111.00057 * 60.00121 * 24 22 21 26 26 C 1.46904 * 111.00052 * 183.95402 * 24 22 21 27 27 C 1.53003 * 109.47295 * 215.00431 * 17 16 13 28 28 H 1.08999 * 109.47223 * 299.99818 * 1 2 3 29 29 H 1.09001 * 109.47250 * 59.99599 * 1 2 3 30 30 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47223 * 240.00182 * 2 1 3 32 32 H 1.09001 * 109.47250 * 120.00401 * 2 1 3 33 33 H 1.09002 * 109.47068 * 205.00213 * 4 3 2 34 34 H 1.09001 * 109.47372 * 325.00300 * 4 3 2 35 35 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 36 36 H 0.96996 * 120.00249 * 244.99874 * 16 13 3 37 37 H 1.09004 * 109.46850 * 180.02562 * 19 17 16 38 38 H 1.08995 * 109.46808 * 300.00021 * 19 17 16 39 39 H 1.09004 * 109.47357 * 300.00332 * 20 19 17 40 40 H 1.08996 * 109.47514 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.47248 * 179.97438 * 21 20 19 42 42 H 1.09008 * 109.47169 * 60.00310 * 21 20 19 43 43 H 1.09000 * 109.47484 * 60.00152 * 25 24 22 44 44 H 1.09003 * 109.47575 * 179.97438 * 25 24 22 45 45 H 1.09000 * 109.47835 * 299.99807 * 25 24 22 46 46 H 1.09004 * 109.46978 * 59.99992 * 26 24 22 47 47 H 1.08991 * 109.47495 * 180.02562 * 26 24 22 48 48 H 1.09000 * 109.47152 * 300.00578 * 26 24 22 49 49 H 1.08990 * 109.47256 * 59.99999 * 27 17 16 50 50 H 1.09000 * 109.47047 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 3.4948 1.7887 1.8824 6 1 4.1720 1.1110 1.3839 7 6 3.8525 2.3603 3.0850 8 7 3.0276 3.1852 3.6922 9 14 5.5096 1.9643 3.8511 10 1 6.2459 1.0172 2.9759 11 1 6.2968 3.2144 4.0014 12 1 5.3029 1.3461 5.1854 13 16 2.4121 2.1202 -1.4285 14 8 1.6868 1.4416 -2.4447 15 8 2.3056 3.5187 -1.1997 16 7 4.0143 1.8138 -1.7137 17 6 4.4656 0.4414 -1.9569 18 1 3.7681 -0.2577 -1.4954 19 6 4.5242 0.1833 -3.4638 20 6 5.5033 1.1644 -4.1116 21 6 6.8950 0.9705 -3.5064 22 6 6.8365 1.2285 -1.9995 23 1 6.5008 2.2496 -1.8186 24 7 8.1727 1.0417 -1.4184 25 6 9.1417 1.9688 -2.0177 26 6 8.1368 1.1897 0.0427 27 6 5.8574 0.2473 -1.3517 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0921 3.1802 1.0757 34 1 1.3617 1.8096 1.9454 35 1 3.2791 3.5871 4.5384 36 1 4.6540 2.5429 -1.7196 37 1 4.8596 -0.8380 -3.6448 38 1 3.5327 0.3215 -3.8949 39 1 5.1676 2.1856 -3.9306 40 1 5.5454 0.9803 -5.1851 41 1 7.5927 1.6692 -3.9683 42 1 7.2309 -0.0507 -3.6874 43 1 8.8224 2.9952 -1.8369 44 1 10.1223 1.8095 -1.5693 45 1 9.1995 1.7902 -3.0914 46 1 7.4638 0.4445 0.4669 47 1 9.1387 1.0470 0.4471 48 1 7.7809 2.1878 0.2982 49 1 5.8157 0.4312 -0.2782 50 1 6.1933 -0.7736 -1.5330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336909841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:30 Heat of formation + Delta-G solvation = -84.590209 kcal Electronic energy + Delta-G solvation = -30008.009189 eV Core-core repulsion = 26196.475872 eV Total energy + Delta-G solvation = -3811.533316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.62771 -36.72939 -36.23070 -36.01692 -35.17801 -32.95575 -32.72456 -30.01144 -29.94156 -29.09839 -27.30664 -26.62371 -24.09444 -23.17697 -22.28198 -21.70346 -20.94709 -19.79463 -18.49936 -17.22544 -16.83941 -16.36243 -16.04537 -15.89206 -15.24149 -14.92803 -14.56622 -14.35251 -14.31148 -13.91975 -13.74543 -13.35263 -13.25134 -12.93771 -12.64556 -12.41460 -12.36890 -12.09236 -12.04259 -11.93151 -11.68600 -11.53345 -11.46676 -11.40594 -11.32844 -11.28540 -11.08540 -11.06223 -10.94836 -10.63098 -10.51250 -10.46186 -10.26061 -10.05936 -9.97837 -9.76503 -9.07959 -8.51562 -8.32929 -8.05903 -6.12653 -4.18694 1.34077 3.20635 3.28390 3.30215 3.54054 3.88819 4.19584 4.33624 4.66068 4.77748 4.95015 5.05241 5.15868 5.19278 5.22315 5.26413 5.34549 5.39018 5.43588 5.50001 5.55976 5.62069 5.65647 5.70373 5.75129 5.77798 5.82913 5.85446 5.95019 6.02444 6.10103 6.10949 6.17611 6.26260 6.27940 6.33907 6.43003 6.52216 6.65845 6.68633 7.04841 7.08640 7.24969 7.39370 7.49875 7.67432 7.85082 8.14699 8.86318 9.46909 10.95528 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.006826 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.042978 B = 4101.190868 C = 6356.598788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 N -0.991 5.991 4 C 0.246 3.754 5 C -0.534 4.534 6 H 0.063 0.937 7 C 0.063 3.937 8 N -0.890 5.890 9 Si 0.890 3.110 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.284 1.284 13 S 2.785 3.215 14 O -0.998 6.998 15 O -0.983 6.983 16 N -1.118 6.118 17 C 0.165 3.835 18 H 0.084 0.916 19 C -0.138 4.138 20 C -0.115 4.115 21 C -0.111 4.111 22 C 0.084 3.916 23 H 0.044 0.956 24 N -0.542 5.542 25 C 0.021 3.979 26 C 0.017 3.983 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.038 0.962 35 H 0.263 0.737 36 H 0.410 0.590 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.024 0.976 44 H 0.064 0.936 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.063 0.937 48 H 0.030 0.970 49 H 0.082 0.918 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -6.998 -11.757 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.833 5.833 4 C 0.124 3.876 5 C -0.574 4.574 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.718 3.282 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.210 1.210 13 S 2.793 3.207 14 O -0.982 6.982 15 O -0.968 6.968 16 N -0.877 5.877 17 C 0.056 3.944 18 H 0.101 0.899 19 C -0.177 4.177 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.024 4.024 23 H 0.061 0.939 24 N -0.266 5.266 25 C -0.127 4.127 26 C -0.131 4.131 27 C -0.160 4.160 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.083 0.917 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.100 0.900 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.379 -6.996 -12.235 15.471 hybrid contribution 1.277 0.839 1.208 1.948 sum 7.656 -6.158 -11.027 14.769 Atomic orbital electron populations 1.22202 0.96917 1.01372 1.02417 1.21031 0.93797 0.83024 1.01962 1.57700 1.78612 1.22813 1.24186 1.19179 0.97289 0.92207 0.78963 1.21584 1.02175 1.27784 1.05845 0.91837 1.24956 0.97120 0.94924 0.96977 1.69943 1.35903 1.29977 1.17026 0.86577 0.84103 0.78199 0.79336 1.19446 1.21050 1.21026 1.01735 0.72951 0.73027 0.72989 1.93539 1.70935 1.76396 1.57290 1.93584 1.85884 1.31290 1.85999 1.56107 1.29053 1.14238 1.88342 1.20597 0.96299 0.82635 0.94842 0.89854 1.22087 1.00632 0.99443 0.95585 1.21455 0.94483 1.00177 0.99245 1.21639 0.96966 1.02308 0.94006 1.21643 0.88169 0.98125 0.94475 0.93852 1.62066 1.07272 1.52108 1.05116 1.22420 0.96056 0.93898 1.00368 1.22487 1.02184 1.01019 0.87415 1.21933 0.92938 0.99924 1.01174 0.92090 0.92620 0.92373 0.91974 0.90209 0.93293 0.94434 0.92705 0.75607 0.91116 0.90452 0.91887 0.91905 0.92183 0.91131 0.95718 0.91709 0.91222 0.90477 0.91780 0.95161 0.89996 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 10.24 37.15 0.38 -2.26 16 2 C 0.13 2.15 5.77 -4.05 -0.02 2.12 16 3 N -0.99 -19.80 2.82 -115.66 -0.33 -20.13 16 4 C 0.25 5.98 5.43 -5.19 -0.03 5.95 16 5 C -0.53 -13.56 9.38 -34.44 -0.32 -13.88 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 9 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 S 2.79 54.09 6.01 -107.50 -0.65 53.45 16 14 O -1.00 -19.60 16.37 -57.17 -0.94 -20.53 16 15 O -0.98 -22.89 16.69 -57.17 -0.95 -23.84 16 16 N -1.12 -17.83 4.80 -4.89 -0.02 -17.86 16 17 C 0.16 2.23 3.01 -67.93 -0.20 2.02 16 18 H 0.08 1.12 6.23 -51.93 -0.32 0.80 16 19 C -0.14 -1.64 5.64 -26.73 -0.15 -1.79 16 20 C -0.12 -1.26 5.77 -26.73 -0.15 -1.41 16 21 C -0.11 -1.18 4.97 -26.73 -0.13 -1.31 16 22 C 0.08 1.05 1.76 -67.71 -0.12 0.93 16 23 H 0.04 0.60 6.51 -51.93 -0.34 0.26 16 24 N -0.54 -6.72 4.89 -243.19 -1.19 -7.91 16 25 C 0.02 0.22 9.21 60.06 0.55 0.77 16 26 C 0.02 0.23 9.11 60.07 0.55 0.77 16 27 C -0.12 -1.57 4.55 -26.72 -0.12 -1.69 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.91 6.20 -51.93 -0.32 0.59 16 32 H 0.08 1.33 8.11 -51.93 -0.42 0.90 16 33 H 0.05 1.33 6.91 -51.93 -0.36 0.98 16 34 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.41 6.29 6.81 -34.47 -0.23 6.05 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.08 1.02 7.64 -51.93 -0.40 0.62 16 39 H 0.06 0.74 7.45 -51.93 -0.39 0.36 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.59 6.41 -51.93 -0.33 0.26 16 42 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 43 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 45 H 0.07 0.65 6.30 -51.93 -0.33 0.33 16 46 H 0.08 1.10 6.23 -51.93 -0.32 0.78 16 47 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 48 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 50 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -30.71 390.89 -11.05 -41.76 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -8.71 Total: 6.65 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.13 Total: -8.19 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.80 Total: -70.40 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.89 Total: -44.38 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: 54.09 SS G_CDS: -0.65 Total: 53.45 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.71 -11.05 -41.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.833 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds