Wall clock time and date at job start Tue Mar 31 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46498 * 109.47296 * 2 1 4 4 C 1.46505 * 119.99594 * 85.00064 * 3 2 1 5 5 C 1.50703 * 109.47064 * 85.00244 * 4 3 2 6 6 H 1.07996 * 119.99751 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00001 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00094 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99955 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46999 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.46942 * 119.99666 * 9 7 5 12 12 H 1.48504 * 109.46979 * 239.99580 * 9 7 5 13 13 S 1.65591 * 120.00456 * 265.00172 * 3 2 1 14 14 O 1.42104 * 106.40084 * 23.54037 * 13 3 2 15 15 O 1.42103 * 106.40538 * 156.45682 * 13 3 2 16 16 N 1.65597 * 107.22042 * 269.99973 * 13 3 2 17 17 C 1.46500 * 119.99975 * 64.99656 * 16 13 3 18 18 H 1.09004 * 109.47483 * 335.00059 * 17 16 13 19 19 C 1.53005 * 109.47063 * 95.00214 * 17 16 13 20 20 C 1.52995 * 109.47154 * 60.00077 * 19 17 16 21 21 C 1.53001 * 109.47205 * 59.99748 * 20 19 17 22 22 C 1.52998 * 109.47550 * 300.00106 * 21 20 19 23 23 H 1.08994 * 109.46943 * 300.00013 * 22 21 20 24 24 N 1.46896 * 109.47270 * 179.97438 * 22 21 20 25 25 C 1.46890 * 111.00057 * 60.00121 * 24 22 21 26 26 C 1.46904 * 111.00052 * 183.95402 * 24 22 21 27 27 C 1.53003 * 109.47295 * 215.00431 * 17 16 13 28 28 H 1.08999 * 109.47223 * 299.99818 * 1 2 3 29 29 H 1.09001 * 109.47250 * 59.99599 * 1 2 3 30 30 H 1.09006 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47223 * 240.00182 * 2 1 3 32 32 H 1.09001 * 109.47250 * 120.00401 * 2 1 3 33 33 H 1.09002 * 109.47068 * 205.00213 * 4 3 2 34 34 H 1.09001 * 109.47372 * 325.00300 * 4 3 2 35 35 H 0.97000 * 120.00333 * 179.97438 * 8 7 5 36 36 H 0.96996 * 120.00249 * 244.99874 * 16 13 3 37 37 H 1.09004 * 109.46850 * 180.02562 * 19 17 16 38 38 H 1.08995 * 109.46808 * 300.00021 * 19 17 16 39 39 H 1.09004 * 109.47357 * 300.00332 * 20 19 17 40 40 H 1.08996 * 109.47514 * 179.97438 * 20 19 17 41 41 H 1.09005 * 109.47248 * 179.97438 * 21 20 19 42 42 H 1.09008 * 109.47169 * 60.00310 * 21 20 19 43 43 H 1.09000 * 109.47484 * 60.00152 * 25 24 22 44 44 H 1.09003 * 109.47575 * 179.97438 * 25 24 22 45 45 H 1.09000 * 109.47835 * 299.99807 * 25 24 22 46 46 H 1.09004 * 109.46978 * 59.99992 * 26 24 22 47 47 H 1.08991 * 109.47495 * 180.02562 * 26 24 22 48 48 H 1.09000 * 109.47152 * 300.00578 * 26 24 22 49 49 H 1.08990 * 109.47256 * 59.99999 * 27 17 16 50 50 H 1.09000 * 109.47047 * 180.02562 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 3.4948 1.7887 1.8824 6 1 4.1720 1.1110 1.3839 7 6 3.8525 2.3603 3.0850 8 7 3.0276 3.1852 3.6922 9 14 5.5096 1.9643 3.8511 10 1 6.2459 1.0172 2.9759 11 1 6.2968 3.2144 4.0014 12 1 5.3029 1.3461 5.1854 13 16 2.4121 2.1202 -1.4285 14 8 1.6868 1.4416 -2.4447 15 8 2.3056 3.5187 -1.1997 16 7 4.0143 1.8138 -1.7137 17 6 4.4656 0.4414 -1.9569 18 1 3.7681 -0.2577 -1.4954 19 6 4.5242 0.1833 -3.4638 20 6 5.5033 1.1644 -4.1116 21 6 6.8950 0.9705 -3.5064 22 6 6.8365 1.2285 -1.9995 23 1 6.5008 2.2496 -1.8186 24 7 8.1727 1.0417 -1.4184 25 6 9.1417 1.9688 -2.0177 26 6 8.1368 1.1897 0.0427 27 6 5.8574 0.2473 -1.3517 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.0921 3.1802 1.0757 34 1 1.3617 1.8096 1.9454 35 1 3.2791 3.5871 4.5384 36 1 4.6540 2.5429 -1.7196 37 1 4.8596 -0.8380 -3.6448 38 1 3.5327 0.3215 -3.8949 39 1 5.1676 2.1856 -3.9306 40 1 5.5454 0.9803 -5.1851 41 1 7.5927 1.6692 -3.9683 42 1 7.2309 -0.0507 -3.6874 43 1 8.8224 2.9952 -1.8369 44 1 10.1223 1.8095 -1.5693 45 1 9.1995 1.7902 -3.0914 46 1 7.4638 0.4445 0.4669 47 1 9.1387 1.0470 0.4471 48 1 7.7809 2.1878 0.2982 49 1 5.8157 0.4312 -0.2782 50 1 6.1933 -0.7736 -1.5330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336909841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:29 Heat of formation + Delta-G solvation = -106.655965 kcal Electronic energy + Delta-G solvation = -30008.966032 eV Core-core repulsion = 26196.475872 eV Total energy + Delta-G solvation = -3812.490159 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.62712 -38.30925 -37.67277 -37.31322 -36.85115 -34.68625 -34.04322 -31.52044 -31.01377 -30.13253 -28.49404 -28.25760 -25.05527 -24.93622 -23.32348 -23.20687 -21.92517 -21.02081 -19.82195 -18.73922 -18.50050 -18.20712 -17.43255 -17.04870 -16.67643 -16.19367 -15.88569 -15.52531 -15.37138 -15.26156 -14.86012 -14.77845 -14.66182 -14.29619 -13.79688 -13.78446 -13.57439 -13.40450 -13.35255 -13.33104 -13.15223 -13.03400 -13.02377 -12.77446 -12.65373 -12.54063 -12.38837 -12.29228 -12.22307 -12.20670 -12.10543 -11.71762 -11.59735 -11.51788 -11.24813 -10.98584 -10.59652 -10.29617 -9.76256 -9.31511 -8.16618 -6.29481 -0.23156 1.39770 1.41677 1.52591 2.03086 2.41825 2.64117 2.95477 3.15695 3.46452 3.69212 3.83102 3.94614 4.01894 4.20662 4.24804 4.34103 4.42306 4.44148 4.46658 4.49720 4.52239 4.55384 4.68325 4.70099 4.73104 4.74310 4.80282 4.98331 5.00053 5.04605 5.05525 5.15357 5.19211 5.21329 5.27322 5.31131 5.36491 5.41201 5.43804 5.53415 5.57144 5.77589 5.91475 6.07368 6.11862 6.14554 6.17366 6.83793 7.40468 8.91894 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008992 B = 0.006826 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3113.042978 B = 4101.190868 C = 6356.598788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.995 5.995 4 C 0.262 3.738 5 C -0.532 4.532 6 H 0.076 0.924 7 C 0.008 3.992 8 N -0.932 5.932 9 Si 0.952 3.048 10 H -0.248 1.248 11 H -0.288 1.288 12 H -0.283 1.283 13 S 2.798 3.202 14 O -0.998 6.998 15 O -1.027 7.027 16 N -1.111 6.111 17 C 0.156 3.844 18 H 0.086 0.914 19 C -0.134 4.134 20 C -0.116 4.116 21 C -0.102 4.102 22 C 0.082 3.918 23 H 0.025 0.975 24 N -0.541 5.541 25 C 0.019 3.981 26 C 0.017 3.983 27 C -0.114 4.114 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.012 0.988 34 H 0.020 0.980 35 H 0.263 0.737 36 H 0.413 0.587 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.016 0.984 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.010 0.990 49 H 0.058 0.942 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.964 -9.358 -13.270 18.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.006 4.006 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.571 4.571 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.572 5.572 9 Si 0.778 3.222 10 H -0.171 1.171 11 H -0.215 1.215 12 H -0.209 1.209 13 S 2.806 3.194 14 O -0.982 6.982 15 O -1.011 7.011 16 N -0.872 5.872 17 C 0.049 3.951 18 H 0.104 0.896 19 C -0.173 4.173 20 C -0.154 4.154 21 C -0.140 4.140 22 C -0.027 4.027 23 H 0.043 0.957 24 N -0.265 5.265 25 C -0.129 4.129 26 C -0.131 4.131 27 C -0.153 4.153 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.030 0.970 34 H 0.038 0.962 35 H 0.072 0.928 36 H 0.248 0.752 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.035 0.965 44 H 0.094 0.906 45 H 0.103 0.897 46 H 0.086 0.914 47 H 0.097 0.903 48 H 0.029 0.971 49 H 0.077 0.923 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.370 -9.387 -13.778 18.655 hybrid contribution 0.637 1.545 1.615 2.324 sum 9.007 -7.842 -12.163 17.046 Atomic orbital electron populations 1.22196 0.96039 1.03260 1.01242 1.21329 0.94671 0.81291 1.03330 1.57598 1.79382 1.24012 1.22614 1.18690 0.96616 0.90594 0.80311 1.21884 1.02445 1.27176 1.05608 0.90562 1.25812 1.00647 0.94851 0.97745 1.70082 1.38048 1.31500 1.17579 0.85585 0.79893 0.78138 0.78624 1.17120 1.21478 1.20899 1.01189 0.73640 0.71858 0.72709 1.93531 1.71614 1.76081 1.56939 1.93522 1.86871 1.34224 1.86518 1.55855 1.27686 1.15739 1.87949 1.20897 0.96678 0.80953 0.96563 0.89604 1.22065 1.00368 1.01169 0.93734 1.21474 0.94369 0.99143 1.00394 1.21575 0.96948 1.03204 0.92252 1.21682 0.88168 0.96926 0.95917 0.95718 1.62118 1.07400 1.52526 1.04451 1.22505 0.95984 0.93061 1.01322 1.22475 1.02726 0.99522 0.88398 1.21862 0.92711 1.01093 0.99639 0.93587 0.93459 0.88962 0.89353 0.89988 0.96987 0.96181 0.92785 0.75209 0.88561 0.91757 0.93285 0.89998 0.91172 0.90018 0.96525 0.90608 0.89661 0.91411 0.90290 0.97091 0.92335 0.88411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.07 10.24 71.98 0.74 -4.33 16 2 C 0.12 3.86 5.77 86.38 0.50 4.35 16 3 N -1.00 -40.16 2.82 -519.84 -1.47 -41.63 16 4 C 0.26 13.19 5.43 85.63 0.47 13.65 16 5 C -0.53 -27.28 9.38 25.60 0.24 -27.04 16 6 H 0.08 3.64 7.81 -2.91 -0.02 3.62 16 7 C 0.01 0.45 5.46 84.65 0.46 0.91 16 8 N -0.93 -54.35 13.29 21.45 0.28 -54.07 16 9 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 10 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 11 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 13 S 2.80 109.70 6.01 -56.49 -0.34 109.36 16 14 O -1.00 -38.53 16.37 -128.00 -2.10 -40.63 16 15 O -1.03 -49.60 16.69 -128.00 -2.14 -51.74 16 16 N -1.11 -35.01 4.80 -169.37 -0.81 -35.82 16 17 C 0.16 3.95 3.01 44.99 0.14 4.08 16 18 H 0.09 2.12 6.23 -2.38 -0.01 2.11 16 19 C -0.13 -2.81 5.64 30.59 0.17 -2.64 16 20 C -0.12 -2.22 5.77 30.59 0.18 -2.04 16 21 C -0.10 -1.85 4.97 30.59 0.15 -1.69 16 22 C 0.08 1.88 1.76 44.92 0.08 1.95 16 23 H 0.02 0.67 6.51 -2.39 -0.02 0.65 16 24 N -0.54 -12.25 4.89 -923.31 -4.51 -16.76 16 25 C 0.02 0.36 9.21 127.69 1.18 1.54 16 26 C 0.02 0.43 9.11 127.69 1.16 1.60 16 27 C -0.11 -2.74 4.55 30.60 0.14 -2.60 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.09 2.40 6.20 -2.39 -0.01 2.38 16 32 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 33 H 0.01 0.70 6.91 -2.39 -0.02 0.68 16 34 H 0.02 1.07 8.11 -2.39 -0.02 1.05 16 35 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.41 12.77 6.81 -96.75 -0.66 12.12 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.54 7.64 -2.39 -0.02 1.53 16 39 H 0.05 1.08 7.45 -2.38 -0.02 1.06 16 40 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.15 6.41 -2.38 -0.02 1.13 16 42 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 43 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.08 1.26 8.12 -2.39 -0.02 1.24 16 45 H 0.08 1.33 6.30 -2.39 -0.02 1.32 16 46 H 0.07 1.83 6.23 -2.39 -0.01 1.81 16 47 H 0.08 1.72 8.12 -2.39 -0.02 1.70 16 48 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 49 H 0.06 1.70 6.34 -2.39 -0.02 1.68 16 50 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -67.19 390.89 -3.20 -70.39 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.26 Total: 29.52 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: 5.60 Total: -12.26 kcal Atomic # 7 Polarization: -141.76 SS G_CDS: -6.51 Total: -148.27 kcal Atomic # 8 Polarization: -88.13 SS G_CDS: -4.23 Total: -92.37 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.34 Total: 109.36 kcal Total: -67.19 -3.20 -70.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336909841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.266 kcal (2) G-P(sol) polarization free energy of solvation -67.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds