Wall clock time and date at job start Tue Mar 31 2020 17:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 C 1.46500 * 120.00304 * 274.06471 * 3 2 1 5 5 C 1.50698 * 109.46678 * 280.93590 * 4 3 2 6 6 H 1.08002 * 120.00505 * 3.28705 * 5 4 3 7 7 C 1.37885 * 120.00039 * 183.29082 * 5 4 3 8 8 N 1.31515 * 119.99299 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47222 * 89.99810 * 9 7 5 11 11 H 1.48493 * 109.47183 * 209.99936 * 9 7 5 12 12 H 1.48504 * 109.47072 * 329.99847 * 9 7 5 13 13 S 1.65601 * 119.99738 * 94.05860 * 3 2 1 14 14 O 1.42103 * 106.40128 * 336.45007 * 13 3 2 15 15 O 1.42099 * 106.40436 * 203.52955 * 13 3 2 16 16 N 1.65595 * 107.21699 * 89.98652 * 13 3 2 17 17 C 1.46501 * 119.99728 * 65.59958 * 16 13 3 18 18 C 1.53000 * 109.47161 * 164.32132 * 17 16 13 19 19 C 1.52999 * 109.47136 * 179.97438 * 18 17 16 20 20 C 1.53125 * 109.52389 * 184.99839 * 19 18 17 21 21 C 1.53038 * 109.27878 * 182.44093 * 20 19 18 22 22 N 1.46846 * 109.52323 * 59.17536 * 21 20 19 23 23 C 1.46901 * 111.00016 * 174.15754 * 22 21 20 24 24 C 1.46843 * 111.20186 * 298.25772 * 22 21 20 25 25 C 1.53040 * 109.52172 * 61.74166 * 24 22 21 26 26 H 1.09003 * 109.46937 * 185.05083 * 1 2 3 27 27 H 1.09001 * 109.47247 * 305.04296 * 1 2 3 28 28 H 1.09000 * 109.47531 * 65.04991 * 1 2 3 29 29 H 1.09009 * 109.46890 * 240.00715 * 2 1 3 30 30 H 1.09000 * 109.47560 * 120.00903 * 2 1 3 31 31 H 1.08997 * 109.47268 * 40.93156 * 4 3 2 32 32 H 1.08993 * 109.47338 * 160.93773 * 4 3 2 33 33 H 0.97000 * 119.99596 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00457 * 245.58913 * 16 13 3 35 35 H 1.08998 * 109.47619 * 44.31433 * 17 16 13 36 36 H 1.09011 * 109.46728 * 284.31378 * 17 16 13 37 37 H 1.08999 * 109.47119 * 59.99629 * 18 17 16 38 38 H 1.08999 * 109.47101 * 299.99187 * 18 17 16 39 39 H 1.09004 * 109.57678 * 305.15459 * 19 18 17 40 40 H 1.08996 * 109.50357 * 62.49855 * 20 19 18 41 41 H 1.08999 * 109.53434 * 302.39948 * 20 19 18 42 42 H 1.08999 * 109.45817 * 299.16384 * 21 20 19 43 43 H 1.08997 * 109.46204 * 179.19741 * 21 20 19 44 44 H 1.09005 * 109.46792 * 60.00400 * 23 22 21 45 45 H 1.09001 * 109.47387 * 300.00816 * 23 22 21 46 46 H 1.08992 * 109.47266 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.46069 * 181.75392 * 24 22 21 48 48 H 1.08992 * 109.46281 * 301.73006 * 24 22 21 49 49 H 1.08999 * 109.50282 * 180.87922 * 25 24 22 50 50 H 1.09005 * 109.53555 * 60.78185 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2655 5 6 3.4575 1.6681 -1.9327 6 1 4.0622 0.8915 -1.4879 7 6 3.8567 2.2628 -3.1109 8 7 3.1201 3.2081 -3.6527 9 14 5.4433 1.7257 -3.9376 10 1 5.1580 0.6170 -4.8834 11 1 6.0272 2.8716 -4.6798 12 1 6.4061 1.2615 -2.9066 13 16 2.3900 2.1279 1.4306 14 8 1.6488 1.4549 2.4390 15 8 2.2875 3.5251 1.1925 16 7 3.9875 1.8227 1.7423 17 6 5.0229 2.3673 0.8604 18 6 6.3821 2.2845 1.5579 19 6 7.4635 2.8526 0.6366 20 6 8.8389 2.6570 1.2806 21 6 9.9102 3.2812 0.3835 22 7 9.6309 4.7121 0.2083 23 6 10.7135 5.3730 -0.5327 24 6 8.3361 4.9236 -0.4514 25 6 7.2178 4.3484 0.4208 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3634 0.5901 0.8414 28 1 -0.3634 0.4335 -0.9317 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.3341 1.8798 -1.9189 32 1 2.2145 3.1737 -1.0711 33 1 3.4011 3.6267 -4.4813 34 1 4.2378 1.2835 2.5088 35 1 4.7947 3.4082 0.6316 36 1 5.0531 1.7902 -0.0640 37 1 6.6103 1.2434 1.7866 38 1 6.3520 2.8614 2.4821 39 1 7.4340 2.3364 -0.3230 40 1 9.0378 1.5918 1.3977 41 1 8.8559 3.1399 2.2577 42 1 9.9024 2.7880 -0.5884 43 1 10.8892 3.1562 0.8462 44 1 10.8138 4.9135 -1.5161 45 1 11.6488 5.2641 0.0162 46 1 10.4813 6.4317 -0.6480 47 1 8.1719 5.9915 -0.5950 48 1 8.3357 4.4226 -1.4194 49 1 6.2584 4.4916 -0.0764 50 1 7.2081 4.8583 1.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336912328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:45 Heat of formation + Delta-G solvation = -96.051984 kcal Electronic energy + Delta-G solvation = -28921.191844 eV Core-core repulsion = 25109.161508 eV Total energy + Delta-G solvation = -3812.030336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.19654 -36.65485 -36.12404 -35.87904 -35.15817 -33.58300 -32.73535 -30.83713 -29.92329 -29.23781 -26.64695 -25.78918 -23.48734 -23.15761 -22.74389 -21.70393 -21.00392 -19.63594 -18.69621 -17.05754 -16.78627 -16.47205 -15.97150 -15.52248 -15.13307 -15.06808 -14.80544 -14.53248 -14.36200 -13.88786 -13.70864 -13.37852 -13.20592 -12.90026 -12.81471 -12.43228 -12.36352 -12.07226 -11.97574 -11.80893 -11.71212 -11.61880 -11.44307 -11.29852 -11.24577 -11.16489 -11.12105 -11.08568 -10.97519 -10.54711 -10.47050 -10.39254 -10.15604 -10.07653 -9.95914 -9.79631 -8.85855 -8.54345 -8.38818 -8.04715 -6.15038 -4.21142 1.35971 3.18693 3.26675 3.27304 3.60379 3.89655 4.21304 4.30678 4.75312 4.82394 4.86929 5.07604 5.13489 5.18339 5.29786 5.32120 5.35956 5.45126 5.49295 5.53022 5.60911 5.68574 5.72887 5.72994 5.77811 5.80997 5.85683 5.93800 6.00941 6.08731 6.11091 6.15063 6.18715 6.34029 6.40763 6.45897 6.56682 6.68061 6.68934 6.74731 7.01698 7.04563 7.32586 7.39205 7.48581 7.69626 7.83022 8.13224 8.83152 9.43880 10.92758 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004492 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.895003 B = 6231.689355 C = 7793.227756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.131 6.131 17 C 0.112 3.888 18 C -0.116 4.116 19 C -0.089 4.089 20 C -0.109 4.109 21 C 0.055 3.945 22 N -0.544 5.544 23 C 0.025 3.975 24 C 0.054 3.946 25 C -0.117 4.117 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.054 0.946 33 H 0.264 0.736 34 H 0.405 0.595 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.023 0.977 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.034 0.966 49 H 0.080 0.920 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.177 -2.190 7.648 12.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.196 1.196 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.889 5.889 17 C -0.014 4.014 18 C -0.155 4.155 19 C -0.108 4.108 20 C -0.147 4.147 21 C -0.073 4.073 22 N -0.269 5.269 23 C -0.124 4.124 24 C -0.074 4.074 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 9.486 -1.189 8.305 12.664 hybrid contribution 1.371 -1.115 -1.469 2.298 sum 10.858 -2.304 6.835 13.035 Atomic orbital electron populations 1.22201 0.97039 1.01277 1.02320 1.20944 0.93539 0.82935 1.02062 1.57714 1.78820 1.22973 1.23880 1.19195 0.97115 0.92549 0.79014 1.21518 1.07311 1.21138 1.07671 0.91802 1.24925 0.96949 0.94786 0.96980 1.69934 1.37988 1.24863 1.19622 0.86684 0.83762 0.78281 0.79835 1.20680 1.21163 1.19646 1.01685 0.72659 0.73685 0.72594 1.93539 1.69997 1.76505 1.58690 1.93570 1.86012 1.31290 1.85632 1.55957 1.25630 1.68319 1.39012 1.21560 0.86120 1.00321 0.93386 1.21779 0.93931 1.01050 0.98751 1.21173 0.93893 0.96412 0.99348 1.21624 0.93864 0.99906 0.99304 1.22092 0.98900 0.87619 0.98707 1.61964 1.02538 1.12304 1.50074 1.22341 0.94611 0.99366 0.96047 1.22135 0.88753 1.00916 0.95607 1.21739 0.98127 0.94919 1.00668 0.92445 0.92683 0.92182 0.90158 0.92057 0.94827 0.92789 0.92586 0.76352 0.90360 0.89240 0.91746 0.91640 0.90809 0.91648 0.91119 0.94979 0.91099 0.95839 0.91631 0.91426 0.90707 0.94724 0.90130 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 10.24 37.16 0.38 -2.31 16 2 C 0.13 2.28 6.01 -4.04 -0.02 2.25 16 3 N -0.99 -20.02 2.84 -115.67 -0.33 -20.35 16 4 C 0.24 5.84 5.48 -5.19 -0.03 5.81 16 5 C -0.54 -13.22 7.94 -34.44 -0.27 -13.50 16 6 H 0.06 1.51 6.74 -52.49 -0.35 1.16 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 9 Si 0.89 19.78 29.54 -169.99 -5.02 14.76 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 13 S 2.79 54.73 6.11 -107.50 -0.66 54.07 16 14 O -1.00 -20.37 17.09 -57.17 -0.98 -21.34 16 15 O -0.98 -22.69 16.09 -57.17 -0.92 -23.61 16 16 N -1.13 -18.21 6.05 -10.61 -0.06 -18.27 16 17 C 0.11 1.85 5.92 -4.04 -0.02 1.82 16 18 C -0.12 -1.51 4.83 -26.73 -0.13 -1.63 16 19 C -0.09 -1.16 2.25 -90.50 -0.20 -1.37 16 20 C -0.11 -1.21 5.38 -26.65 -0.14 -1.35 16 21 C 0.05 0.61 5.46 -3.83 -0.02 0.59 16 22 N -0.54 -6.53 4.91 -242.97 -1.19 -7.72 16 23 C 0.02 0.25 9.59 60.07 0.58 0.82 16 24 C 0.05 0.70 5.46 -3.83 -0.02 0.68 16 25 C -0.12 -1.60 5.08 -26.65 -0.14 -1.74 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.38 8.05 -51.92 -0.42 0.96 16 30 H 0.06 0.95 7.64 -51.93 -0.40 0.55 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.44 6.83 -51.93 -0.35 1.08 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.40 5.32 8.66 -34.47 -0.30 5.02 16 35 H 0.08 1.43 6.22 -51.93 -0.32 1.11 16 36 H 0.09 1.65 5.59 -51.92 -0.29 1.36 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.69 8.12 -51.93 -0.42 0.27 16 44 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 45 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 47 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 48 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.08 1.23 6.71 -51.93 -0.35 0.88 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -30.17 399.34 -11.65 -41.82 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -9.10 Total: 6.62 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -0.14 Total: -8.29 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -0.85 Total: -70.04 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.90 Total: -44.95 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: 54.73 SS G_CDS: -0.66 Total: 54.07 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.17 -11.65 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.235 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds