Wall clock time and date at job start Tue Mar 31 2020 17:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 C 1.46500 * 120.00304 * 274.06471 * 3 2 1 5 5 C 1.50698 * 109.46678 * 280.93590 * 4 3 2 6 6 H 1.08002 * 120.00505 * 3.28705 * 5 4 3 7 7 C 1.37885 * 120.00039 * 183.29082 * 5 4 3 8 8 N 1.31515 * 119.99299 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47222 * 89.99810 * 9 7 5 11 11 H 1.48493 * 109.47183 * 209.99936 * 9 7 5 12 12 H 1.48504 * 109.47072 * 329.99847 * 9 7 5 13 13 S 1.65601 * 119.99738 * 94.05860 * 3 2 1 14 14 O 1.42103 * 106.40128 * 336.45007 * 13 3 2 15 15 O 1.42099 * 106.40436 * 203.52955 * 13 3 2 16 16 N 1.65595 * 107.21699 * 89.98652 * 13 3 2 17 17 C 1.46501 * 119.99728 * 65.59958 * 16 13 3 18 18 C 1.53000 * 109.47161 * 164.32132 * 17 16 13 19 19 C 1.52999 * 109.47136 * 179.97438 * 18 17 16 20 20 C 1.53125 * 109.52389 * 184.99839 * 19 18 17 21 21 C 1.53038 * 109.27878 * 182.44093 * 20 19 18 22 22 N 1.46846 * 109.52323 * 59.17536 * 21 20 19 23 23 C 1.46901 * 111.00016 * 174.15754 * 22 21 20 24 24 C 1.46843 * 111.20186 * 298.25772 * 22 21 20 25 25 C 1.53040 * 109.52172 * 61.74166 * 24 22 21 26 26 H 1.09003 * 109.46937 * 185.05083 * 1 2 3 27 27 H 1.09001 * 109.47247 * 305.04296 * 1 2 3 28 28 H 1.09000 * 109.47531 * 65.04991 * 1 2 3 29 29 H 1.09009 * 109.46890 * 240.00715 * 2 1 3 30 30 H 1.09000 * 109.47560 * 120.00903 * 2 1 3 31 31 H 1.08997 * 109.47268 * 40.93156 * 4 3 2 32 32 H 1.08993 * 109.47338 * 160.93773 * 4 3 2 33 33 H 0.97000 * 119.99596 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00457 * 245.58913 * 16 13 3 35 35 H 1.08998 * 109.47619 * 44.31433 * 17 16 13 36 36 H 1.09011 * 109.46728 * 284.31378 * 17 16 13 37 37 H 1.08999 * 109.47119 * 59.99629 * 18 17 16 38 38 H 1.08999 * 109.47101 * 299.99187 * 18 17 16 39 39 H 1.09004 * 109.57678 * 305.15459 * 19 18 17 40 40 H 1.08996 * 109.50357 * 62.49855 * 20 19 18 41 41 H 1.08999 * 109.53434 * 302.39948 * 20 19 18 42 42 H 1.08999 * 109.45817 * 299.16384 * 21 20 19 43 43 H 1.08997 * 109.46204 * 179.19741 * 21 20 19 44 44 H 1.09005 * 109.46792 * 60.00400 * 23 22 21 45 45 H 1.09001 * 109.47387 * 300.00816 * 23 22 21 46 46 H 1.08992 * 109.47266 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.46069 * 181.75392 * 24 22 21 48 48 H 1.08992 * 109.46281 * 301.73006 * 24 22 21 49 49 H 1.08999 * 109.50282 * 180.87922 * 25 24 22 50 50 H 1.09005 * 109.53555 * 60.78185 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2655 5 6 3.4575 1.6681 -1.9327 6 1 4.0622 0.8915 -1.4879 7 6 3.8567 2.2628 -3.1109 8 7 3.1201 3.2081 -3.6527 9 14 5.4433 1.7257 -3.9376 10 1 5.1580 0.6170 -4.8834 11 1 6.0272 2.8716 -4.6798 12 1 6.4061 1.2615 -2.9066 13 16 2.3900 2.1279 1.4306 14 8 1.6488 1.4549 2.4390 15 8 2.2875 3.5251 1.1925 16 7 3.9875 1.8227 1.7423 17 6 5.0229 2.3673 0.8604 18 6 6.3821 2.2845 1.5579 19 6 7.4635 2.8526 0.6366 20 6 8.8389 2.6570 1.2806 21 6 9.9102 3.2812 0.3835 22 7 9.6309 4.7121 0.2083 23 6 10.7135 5.3730 -0.5327 24 6 8.3361 4.9236 -0.4514 25 6 7.2178 4.3484 0.4208 26 1 -0.3633 -1.0237 0.0905 27 1 -0.3634 0.5901 0.8414 28 1 -0.3634 0.4335 -0.9317 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5140 0.8899 31 1 1.3341 1.8798 -1.9189 32 1 2.2145 3.1737 -1.0711 33 1 3.4011 3.6267 -4.4813 34 1 4.2378 1.2835 2.5088 35 1 4.7947 3.4082 0.6316 36 1 5.0531 1.7902 -0.0640 37 1 6.6103 1.2434 1.7866 38 1 6.3520 2.8614 2.4821 39 1 7.4340 2.3364 -0.3230 40 1 9.0378 1.5918 1.3977 41 1 8.8559 3.1399 2.2577 42 1 9.9024 2.7880 -0.5884 43 1 10.8892 3.1562 0.8462 44 1 10.8138 4.9135 -1.5161 45 1 11.6488 5.2641 0.0162 46 1 10.4813 6.4317 -0.6480 47 1 8.1719 5.9915 -0.5950 48 1 8.3357 4.4226 -1.4194 49 1 6.2584 4.4916 -0.0764 50 1 7.2081 4.8583 1.3842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336912328.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:45 Heat of formation + Delta-G solvation = -117.635402 kcal Electronic energy + Delta-G solvation = -28922.127771 eV Core-core repulsion = 25109.161508 eV Total energy + Delta-G solvation = -3812.966263 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17577 -38.31110 -37.68978 -37.16325 -36.86294 -34.75928 -34.63290 -31.79828 -31.50500 -30.32339 -28.48369 -26.80173 -24.92728 -24.54055 -23.76814 -23.27129 -22.09411 -20.67924 -20.22627 -18.64839 -18.56534 -18.22886 -17.31135 -16.88377 -16.52427 -16.11348 -16.02588 -15.91150 -15.48566 -15.30683 -14.95037 -14.75765 -14.63163 -14.30151 -13.95686 -13.76697 -13.65912 -13.51412 -13.31556 -13.29314 -13.16325 -13.02075 -12.83261 -12.75921 -12.72381 -12.69511 -12.48254 -12.27601 -12.16385 -12.09319 -12.07203 -11.72759 -11.57951 -11.48919 -11.17297 -11.04346 -10.56294 -10.29150 -9.75968 -9.31825 -8.14574 -6.26569 -0.24246 1.40919 1.42693 1.51238 2.04746 2.42325 2.65302 3.00325 3.17885 3.46852 3.78348 3.84597 3.86303 4.00367 4.18529 4.24770 4.30388 4.41774 4.44873 4.48372 4.50389 4.57021 4.61370 4.69208 4.71542 4.73457 4.78378 4.89170 4.92369 4.98697 5.00591 5.04037 5.08231 5.17159 5.17941 5.25111 5.29991 5.34131 5.38029 5.42591 5.55160 5.57174 5.80158 5.92996 6.08759 6.14248 6.15274 6.30801 6.84859 7.42429 8.93740 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004492 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.895003 B = 6231.689355 C = 7793.227756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.927 5.927 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.291 1.291 12 H -0.254 1.254 13 S 2.798 3.202 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.113 6.113 17 C 0.113 3.887 18 C -0.106 4.106 19 C -0.088 4.088 20 C -0.102 4.102 21 C 0.052 3.948 22 N -0.550 5.550 23 C 0.023 3.977 24 C 0.055 3.945 25 C -0.117 4.117 26 H 0.090 0.910 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.014 0.986 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.422 0.578 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.091 0.909 44 H 0.020 0.980 45 H 0.083 0.917 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.018 0.982 49 H 0.053 0.947 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.420 -4.116 9.131 15.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.136 3.864 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.182 4.182 8 N -0.567 5.567 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.217 1.217 12 H -0.178 1.178 13 S 2.806 3.194 14 O -0.990 6.990 15 O -1.004 7.004 16 N -0.876 5.876 17 C -0.013 4.013 18 C -0.145 4.145 19 C -0.108 4.108 20 C -0.140 4.140 21 C -0.076 4.076 22 N -0.275 5.275 23 C -0.125 4.125 24 C -0.073 4.073 25 C -0.155 4.155 26 H 0.109 0.891 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.039 0.961 45 H 0.101 0.899 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.037 0.963 49 H 0.072 0.928 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.725 -3.155 9.825 15.619 hybrid contribution 0.637 -0.515 -1.883 2.053 sum 12.362 -3.670 7.942 15.144 Atomic orbital electron populations 1.22193 0.96086 1.03137 1.01244 1.21235 0.94482 0.81299 1.03313 1.57621 1.79528 1.24115 1.22463 1.18732 0.96408 0.91089 0.80208 1.21755 1.07202 1.20677 1.07276 0.90590 1.25692 0.99910 0.94819 0.97814 1.70070 1.39964 1.26469 1.20207 0.85733 0.80435 0.77613 0.79097 1.20302 1.21742 1.17764 1.01142 0.73306 0.72730 0.72196 1.93526 1.70711 1.76275 1.58526 1.93525 1.86840 1.33941 1.86096 1.55553 1.24147 1.68366 1.39528 1.21500 0.88047 0.98416 0.93308 1.21740 0.91333 1.02809 0.98645 1.21158 0.95483 0.95347 0.98781 1.21588 0.92060 1.01173 0.99147 1.22186 0.99983 0.86940 0.98496 1.62001 1.02310 1.13106 1.50061 1.22414 0.94670 0.99386 0.95999 1.22065 0.89617 1.00793 0.94806 1.21699 0.97122 0.95992 1.00657 0.89089 0.93682 0.93369 0.90002 0.89603 0.96755 0.96199 0.92759 0.74182 0.92879 0.91106 0.89377 0.90282 0.92664 0.89822 0.90455 0.95893 0.89033 0.96138 0.89863 0.91055 0.90534 0.96342 0.92812 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.14 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.06 6.01 86.38 0.52 4.57 16 3 N -1.00 -40.35 2.84 -519.85 -1.48 -41.83 16 4 C 0.26 12.86 5.48 85.63 0.47 13.32 16 5 C -0.53 -26.40 7.94 25.60 0.20 -26.20 16 6 H 0.08 3.54 6.74 -2.91 -0.02 3.52 16 7 C 0.02 0.90 5.46 84.66 0.46 1.37 16 8 N -0.93 -52.84 13.29 21.45 0.28 -52.56 16 9 Si 0.95 40.76 29.54 68.60 2.03 42.79 16 10 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 11 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.25 -10.11 7.11 99.48 0.71 -9.41 16 13 S 2.80 109.65 6.11 -56.49 -0.34 109.31 16 14 O -1.01 -39.62 17.09 -128.00 -2.19 -41.80 16 15 O -1.02 -48.65 16.09 -128.00 -2.06 -50.71 16 16 N -1.11 -34.46 6.05 -187.48 -1.13 -35.60 16 17 C 0.11 3.69 5.92 86.38 0.51 4.20 16 18 C -0.11 -2.53 4.83 30.59 0.15 -2.38 16 19 C -0.09 -2.18 2.25 -10.71 -0.02 -2.21 16 20 C -0.10 -1.96 5.38 30.65 0.16 -1.79 16 21 C 0.05 1.03 5.46 86.33 0.47 1.50 16 22 N -0.55 -12.30 4.91 -922.62 -4.53 -16.83 16 23 C 0.02 0.42 9.59 127.69 1.22 1.65 16 24 C 0.06 1.44 5.46 86.33 0.47 1.91 16 25 C -0.12 -3.21 5.08 30.65 0.16 -3.05 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.08 2.70 8.05 -2.38 -0.02 2.68 16 30 H 0.09 2.43 7.64 -2.39 -0.02 2.41 16 31 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.02 1.12 6.83 -2.39 -0.02 1.11 16 33 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.42 10.02 8.66 -96.74 -0.84 9.18 16 35 H 0.05 2.01 6.22 -2.39 -0.01 2.00 16 36 H 0.07 2.59 5.59 -2.38 -0.01 2.57 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.09 1.46 8.12 -2.39 -0.02 1.44 16 44 H 0.02 0.38 8.14 -2.38 -0.02 0.36 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.07 1.23 8.09 -2.39 -0.02 1.21 16 47 H 0.08 1.91 8.09 -2.39 -0.02 1.89 16 48 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.05 1.74 6.71 -2.39 -0.02 1.72 16 50 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -66.10 399.34 -3.85 -69.95 By element: Atomic # 1 Polarization: 28.72 SS G_CDS: 0.07 Total: 28.79 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.51 Total: -11.51 kcal Atomic # 7 Polarization: -139.96 SS G_CDS: -6.86 Total: -146.81 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.25 Total: -92.51 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 16 Polarization: 109.65 SS G_CDS: -0.34 Total: 109.31 kcal Total: -66.10 -3.85 -69.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912328.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.686 kcal (2) G-P(sol) polarization free energy of solvation -66.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds