Wall clock time and date at job start Tue Mar 31 2020 17:51:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46814 * 2 1 4 4 C 1.46501 * 119.99932 * 274.99319 * 3 2 1 5 5 C 1.50689 * 109.47568 * 280.37420 * 4 3 2 6 6 H 1.08004 * 120.00254 * 0.19968 * 5 4 3 7 7 C 1.37876 * 120.00185 * 180.19864 * 5 4 3 8 8 N 1.31515 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47263 * 59.99625 * 9 7 5 11 11 H 1.48500 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47014 * 299.99973 * 9 7 5 13 13 S 1.65599 * 120.00106 * 95.00292 * 3 2 1 14 14 O 1.42098 * 106.40281 * 338.79729 * 13 3 2 15 15 O 1.42108 * 106.40232 * 205.87852 * 13 3 2 16 16 N 1.65603 * 107.21981 * 92.33996 * 13 3 2 17 17 C 1.46498 * 120.00232 * 66.00061 * 16 13 3 18 18 C 1.52999 * 109.46844 * 163.77655 * 17 16 13 19 19 H 1.08998 * 109.47216 * 304.99804 * 18 17 16 20 20 C 1.52996 * 109.47213 * 65.00220 * 18 17 16 21 21 C 1.53004 * 109.46892 * 185.00143 * 18 17 16 22 22 N 1.46899 * 109.47034 * 64.78458 * 21 18 17 23 23 C 1.48525 * 111.00077 * 58.95901 * 22 21 18 24 24 C 1.54938 * 103.22732 * 159.71634 * 23 22 21 25 25 C 1.54592 * 102.92269 * 322.58932 * 24 23 22 26 26 C 1.47900 * 110.99758 * 176.35869 * 22 21 18 27 27 H 1.08998 * 109.47028 * 300.00333 * 1 2 3 28 28 H 1.08997 * 109.47093 * 60.00126 * 1 2 3 29 29 H 1.09000 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47028 * 239.99667 * 2 1 3 31 31 H 1.08997 * 109.47093 * 119.99874 * 2 1 3 32 32 H 1.09001 * 109.47018 * 40.37864 * 4 3 2 33 33 H 1.09006 * 109.46884 * 160.37244 * 4 3 2 34 34 H 0.96998 * 120.00368 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99532 * 246.27901 * 16 13 3 36 36 H 1.09003 * 109.47085 * 283.77616 * 17 16 13 37 37 H 1.08996 * 109.46556 * 43.77607 * 17 16 13 38 38 H 1.09003 * 109.47235 * 304.77278 * 20 18 17 39 39 H 1.09005 * 109.47438 * 64.77273 * 20 18 17 40 40 H 1.08997 * 109.47345 * 184.77239 * 20 18 17 41 41 H 1.08996 * 109.47122 * 184.78954 * 21 18 17 42 42 H 1.09003 * 109.46890 * 304.78781 * 21 18 17 43 43 H 1.08995 * 110.67152 * 278.15316 * 23 22 21 44 44 H 1.09003 * 110.66847 * 41.28621 * 23 22 21 45 45 H 1.09000 * 110.72494 * 204.22545 * 24 23 22 46 46 H 1.09002 * 110.71784 * 80.94638 * 24 23 22 47 47 H 1.08993 * 110.31031 * 263.03752 * 25 24 23 48 48 H 1.08999 * 110.30825 * 140.87278 * 25 24 23 49 49 H 1.09004 * 109.91677 * 333.50687 * 26 22 21 50 50 H 1.09000 * 109.92280 * 94.60483 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4345 1.6889 -1.9464 6 1 4.0756 0.9514 -1.4865 7 6 3.7839 2.2464 -3.1581 8 7 3.0030 3.1440 -3.7185 9 14 5.3656 1.7256 -4.0045 10 1 5.3227 0.2669 -4.2797 11 1 5.5096 2.4661 -5.2836 12 1 6.5217 2.0292 -3.1234 13 16 2.4122 2.1202 1.4287 14 8 1.7300 1.4068 2.4509 15 8 2.2524 3.5161 1.2158 16 7 4.0292 1.8679 1.6816 17 6 5.0144 2.4689 0.7792 18 6 6.3957 2.4341 1.4361 19 1 6.3467 2.9190 2.4110 20 6 6.8407 0.9808 1.6110 21 6 7.4008 3.1721 0.5494 22 7 7.0368 4.5933 0.4748 23 6 7.0196 5.2101 1.8258 24 6 7.1510 6.7245 1.5258 25 6 8.1300 6.7564 0.3298 26 6 8.0362 5.3562 -0.3042 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3096 1.8822 -1.9094 33 1 2.1879 3.1800 -1.0652 34 1 3.2486 3.5360 -4.5712 35 1 4.3239 1.3188 2.4250 36 1 5.0418 1.9074 -0.1547 37 1 4.7357 3.5024 0.5736 38 1 6.0826 0.4335 2.1713 39 1 6.9717 0.5204 0.6317 40 1 7.7850 0.9529 2.1547 41 1 8.3999 3.0747 0.9741 42 1 7.3878 2.7406 -0.4515 43 1 6.0785 4.9987 2.3333 44 1 7.8647 4.8608 2.4190 45 1 7.5707 7.2523 2.3821 46 1 6.1861 7.1472 1.2458 47 1 9.1453 6.9472 0.6771 48 1 7.8255 7.5179 -0.3881 49 1 9.0051 4.8595 -0.2524 50 1 7.7152 5.4363 -1.3427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:46 Heat of formation + Delta-G solvation = -86.061521 kcal Electronic energy + Delta-G solvation = -29395.596283 eV Core-core repulsion = 25583.999166 eV Total energy + Delta-G solvation = -3811.597117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.10668 -36.64864 -36.32209 -35.91212 -35.09567 -32.88424 -32.63461 -30.50332 -29.86187 -28.81235 -26.60140 -25.91682 -24.59074 -23.09717 -21.64219 -21.48557 -20.73854 -19.62365 -18.65063 -17.03031 -16.72463 -16.47039 -16.08850 -15.95649 -15.55308 -15.16026 -14.41923 -14.12884 -13.89364 -13.75494 -13.38042 -13.27833 -13.17400 -12.86652 -12.73793 -12.43098 -12.09777 -11.99272 -11.90698 -11.64680 -11.58801 -11.57375 -11.34927 -11.29177 -11.22745 -11.09724 -11.01591 -10.92375 -10.85472 -10.61185 -10.48031 -10.44925 -10.40923 -10.28113 -9.96002 -9.73116 -8.75269 -8.45062 -8.23012 -7.98165 -6.06303 -4.11920 1.42839 3.27010 3.32857 3.33284 3.67926 4.07262 4.27745 4.39012 4.66947 4.73966 4.93344 4.99455 5.12048 5.23987 5.27978 5.28762 5.34686 5.50141 5.51216 5.55744 5.70332 5.74259 5.80712 5.81140 5.83643 5.84497 5.86165 5.92749 6.04611 6.10800 6.15421 6.19557 6.22805 6.26860 6.34729 6.40456 6.61444 6.72929 6.76653 6.88041 7.03082 7.18297 7.39666 7.46697 7.57037 7.76324 7.91035 8.21151 8.90905 9.52724 11.01695 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.005505 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.672991 B = 5084.779547 C = 6569.669246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.245 3.755 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.274 1.274 13 S 2.786 3.214 14 O -1.006 7.006 15 O -0.981 6.981 16 N -1.131 6.131 17 C 0.123 3.877 18 C -0.096 4.096 19 H 0.072 0.928 20 C -0.146 4.146 21 C 0.054 3.946 22 N -0.509 5.509 23 C 0.033 3.967 24 C -0.125 4.125 25 C -0.130 4.130 26 C 0.035 3.965 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.034 0.966 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.402 0.598 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.033 0.967 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.039 0.961 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.216 -0.512 9.472 13.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.123 3.877 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.990 6.990 15 O -0.964 6.964 16 N -0.890 5.890 17 C -0.003 4.003 18 C -0.116 4.116 19 H 0.090 0.910 20 C -0.204 4.204 21 C -0.074 4.074 22 N -0.233 5.233 23 C -0.095 4.095 24 C -0.163 4.163 25 C -0.168 4.168 26 C -0.092 4.092 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.234 0.766 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.068 0.932 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.058 0.942 45 H 0.086 0.914 46 H 0.096 0.904 47 H 0.080 0.920 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.026 0.257 9.433 12.388 hybrid contribution 2.172 -0.860 -0.262 2.351 sum 10.198 -0.604 9.171 13.728 Atomic orbital electron populations 1.22200 0.97121 1.01266 1.02285 1.20938 0.93506 0.83015 1.02046 1.57704 1.78670 1.22856 1.24164 1.19180 0.97286 0.92255 0.79011 1.21447 1.06653 1.24267 1.05115 0.91888 1.24904 0.96775 0.94793 0.97043 1.69919 1.37235 1.27467 1.17869 0.86709 0.84098 0.78474 0.79005 1.20467 1.21372 1.19906 1.01656 0.72693 0.73668 0.72584 1.93530 1.72601 1.75028 1.57847 1.93575 1.85430 1.31504 1.85894 1.56006 1.26034 1.66435 1.40545 1.21531 0.85911 1.00325 0.92498 1.21385 0.95365 0.95745 0.99110 0.91003 1.21819 1.00533 0.95910 1.02186 1.22318 0.95730 0.88435 1.00956 1.64758 1.45335 1.01933 1.11314 1.23263 1.01067 0.93995 0.91181 1.22485 1.00270 0.96033 0.97476 1.22378 0.99182 0.97228 0.97988 1.22856 0.93697 0.93332 0.99357 0.92818 0.92081 0.92453 0.90211 0.91995 0.94746 0.93024 0.92622 0.76562 0.89151 0.89134 0.92281 0.92101 0.93172 0.94877 0.89931 0.89704 0.94238 0.91449 0.90362 0.91975 0.90995 0.94219 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 10.24 37.16 0.38 -2.38 16 2 C 0.13 2.33 6.04 -4.04 -0.02 2.31 16 3 N -0.99 -20.50 2.84 -115.67 -0.33 -20.83 16 4 C 0.24 6.01 5.47 -5.20 -0.03 5.98 16 5 C -0.54 -13.47 7.86 -34.45 -0.27 -13.75 16 6 H 0.06 1.52 6.63 -52.48 -0.35 1.17 16 7 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.96 13.29 55.43 0.74 -24.23 16 9 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 S 2.79 56.04 6.12 -107.50 -0.66 55.38 16 14 O -1.01 -20.79 17.03 -57.17 -0.97 -21.76 16 15 O -0.98 -23.18 16.13 -57.17 -0.92 -24.10 16 16 N -1.13 -18.80 5.92 -10.61 -0.06 -18.86 16 17 C 0.12 2.13 5.46 -4.04 -0.02 2.11 16 18 C -0.10 -1.30 2.33 -90.62 -0.21 -1.51 16 19 H 0.07 0.92 6.66 -51.93 -0.35 0.57 16 20 C -0.15 -1.71 9.12 37.16 0.34 -1.37 16 21 C 0.05 0.75 4.21 -3.82 -0.02 0.73 16 22 N -0.51 -7.45 4.71 -230.46 -1.09 -8.53 16 23 C 0.03 0.41 5.36 -1.90 -0.01 0.40 16 24 C -0.12 -1.41 7.06 -24.87 -0.18 -1.58 16 25 C -0.13 -1.41 6.93 -25.38 -0.18 -1.58 16 26 C 0.04 0.46 6.70 -2.76 -0.02 0.44 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.41 8.08 -51.93 -0.42 0.99 16 31 H 0.06 0.99 7.54 -51.93 -0.39 0.59 16 32 H 0.03 0.89 8.10 -51.93 -0.42 0.47 16 33 H 0.05 1.41 6.88 -51.93 -0.36 1.05 16 34 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.40 5.52 7.35 -34.47 -0.25 5.26 16 36 H 0.09 1.75 5.36 -51.93 -0.28 1.48 16 37 H 0.09 1.83 7.17 -51.93 -0.37 1.45 16 38 H 0.06 0.65 6.77 -51.93 -0.35 0.30 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.40 7.98 -51.93 -0.41 -0.02 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.08 1.14 7.55 -51.93 -0.39 0.75 16 44 H 0.04 0.44 8.01 -51.93 -0.42 0.03 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 49 H 0.04 0.46 7.68 -51.93 -0.40 0.06 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 398.72 15.07 6.01 6.01 Total: -1.00 -30.81 398.72 -11.58 -42.39 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.94 Total: 7.87 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.33 Total: -8.51 kcal Atomic # 7 Polarization: -71.71 SS G_CDS: -0.74 Total: -72.45 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -1.90 Total: -45.86 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 56.04 SS G_CDS: -0.66 Total: 55.38 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.81 -11.58 -42.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.670 kcal (2) G-P(sol) polarization free energy of solvation -30.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds