Wall clock time and date at job start Tue Mar 31 2020 17:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46814 * 2 1 4 4 C 1.46501 * 119.99932 * 274.99319 * 3 2 1 5 5 C 1.50689 * 109.47568 * 280.37420 * 4 3 2 6 6 H 1.08004 * 120.00254 * 0.19968 * 5 4 3 7 7 C 1.37876 * 120.00185 * 180.19864 * 5 4 3 8 8 N 1.31515 * 120.00163 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00184 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47263 * 59.99625 * 9 7 5 11 11 H 1.48500 * 109.47169 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47014 * 299.99973 * 9 7 5 13 13 S 1.65599 * 120.00106 * 95.00292 * 3 2 1 14 14 O 1.42098 * 106.40281 * 338.79729 * 13 3 2 15 15 O 1.42108 * 106.40232 * 205.87852 * 13 3 2 16 16 N 1.65603 * 107.21981 * 92.33996 * 13 3 2 17 17 C 1.46498 * 120.00232 * 66.00061 * 16 13 3 18 18 C 1.52999 * 109.46844 * 163.77655 * 17 16 13 19 19 H 1.08998 * 109.47216 * 304.99804 * 18 17 16 20 20 C 1.52996 * 109.47213 * 65.00220 * 18 17 16 21 21 C 1.53004 * 109.46892 * 185.00143 * 18 17 16 22 22 N 1.46899 * 109.47034 * 64.78458 * 21 18 17 23 23 C 1.48525 * 111.00077 * 58.95901 * 22 21 18 24 24 C 1.54938 * 103.22732 * 159.71634 * 23 22 21 25 25 C 1.54592 * 102.92269 * 322.58932 * 24 23 22 26 26 C 1.47900 * 110.99758 * 176.35869 * 22 21 18 27 27 H 1.08998 * 109.47028 * 300.00333 * 1 2 3 28 28 H 1.08997 * 109.47093 * 60.00126 * 1 2 3 29 29 H 1.09000 * 109.46865 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47028 * 239.99667 * 2 1 3 31 31 H 1.08997 * 109.47093 * 119.99874 * 2 1 3 32 32 H 1.09001 * 109.47018 * 40.37864 * 4 3 2 33 33 H 1.09006 * 109.46884 * 160.37244 * 4 3 2 34 34 H 0.96998 * 120.00368 * 180.02562 * 8 7 5 35 35 H 0.97002 * 119.99532 * 246.27901 * 16 13 3 36 36 H 1.09003 * 109.47085 * 283.77616 * 17 16 13 37 37 H 1.08996 * 109.46556 * 43.77607 * 17 16 13 38 38 H 1.09003 * 109.47235 * 304.77278 * 20 18 17 39 39 H 1.09005 * 109.47438 * 64.77273 * 20 18 17 40 40 H 1.08997 * 109.47345 * 184.77239 * 20 18 17 41 41 H 1.08996 * 109.47122 * 184.78954 * 21 18 17 42 42 H 1.09003 * 109.46890 * 304.78781 * 21 18 17 43 43 H 1.08995 * 110.67152 * 278.15316 * 23 22 21 44 44 H 1.09003 * 110.66847 * 41.28621 * 23 22 21 45 45 H 1.09000 * 110.72494 * 204.22545 * 24 23 22 46 46 H 1.09002 * 110.71784 * 80.94638 * 24 23 22 47 47 H 1.08993 * 110.31031 * 263.03752 * 25 24 23 48 48 H 1.08999 * 110.30825 * 140.87278 * 25 24 23 49 49 H 1.09004 * 109.91677 * 333.50687 * 26 22 21 50 50 H 1.09000 * 109.92280 * 94.60483 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4345 1.6889 -1.9464 6 1 4.0756 0.9514 -1.4865 7 6 3.7839 2.2464 -3.1581 8 7 3.0030 3.1440 -3.7185 9 14 5.3656 1.7256 -4.0045 10 1 5.3227 0.2669 -4.2797 11 1 5.5096 2.4661 -5.2836 12 1 6.5217 2.0292 -3.1234 13 16 2.4122 2.1202 1.4287 14 8 1.7300 1.4068 2.4509 15 8 2.2524 3.5161 1.2158 16 7 4.0292 1.8679 1.6816 17 6 5.0144 2.4689 0.7792 18 6 6.3957 2.4341 1.4361 19 1 6.3467 2.9190 2.4110 20 6 6.8407 0.9808 1.6110 21 6 7.4008 3.1721 0.5494 22 7 7.0368 4.5933 0.4748 23 6 7.0196 5.2101 1.8258 24 6 7.1510 6.7245 1.5258 25 6 8.1300 6.7564 0.3298 26 6 8.0362 5.3562 -0.3042 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.3096 1.8822 -1.9094 33 1 2.1879 3.1800 -1.0652 34 1 3.2486 3.5360 -4.5712 35 1 4.3239 1.3188 2.4250 36 1 5.0418 1.9074 -0.1547 37 1 4.7357 3.5024 0.5736 38 1 6.0826 0.4335 2.1713 39 1 6.9717 0.5204 0.6317 40 1 7.7850 0.9529 2.1547 41 1 8.3999 3.0747 0.9741 42 1 7.3878 2.7406 -0.4515 43 1 6.0785 4.9987 2.3333 44 1 7.8647 4.8608 2.4190 45 1 7.5707 7.2523 2.3821 46 1 6.1861 7.1472 1.2458 47 1 9.1453 6.9472 0.6771 48 1 7.8255 7.5179 -0.3881 49 1 9.0051 4.8595 -0.2524 50 1 7.7152 5.4363 -1.3427 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917929.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:45 Heat of formation + Delta-G solvation = -108.188022 kcal Electronic energy + Delta-G solvation = -29396.555760 eV Core-core repulsion = 25583.999166 eV Total energy + Delta-G solvation = -3812.556594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.13538 -38.30427 -37.73170 -37.46870 -36.85092 -34.63104 -34.08450 -31.55342 -31.46993 -29.76353 -28.47891 -27.04500 -25.79066 -24.91221 -23.24720 -22.52917 -21.69386 -20.79432 -20.21889 -18.65136 -18.53577 -18.23374 -17.41376 -17.01395 -16.91745 -16.64813 -16.13580 -15.45874 -15.26812 -14.96925 -14.74535 -14.57511 -14.51726 -14.31555 -13.88245 -13.72665 -13.60712 -13.47387 -13.32600 -13.18454 -13.13572 -12.99784 -12.84490 -12.72160 -12.65973 -12.58164 -12.28628 -12.22734 -12.08902 -12.05316 -11.90630 -11.75074 -11.63264 -11.55883 -11.43818 -11.40875 -10.50742 -10.25382 -9.74623 -9.24202 -8.10225 -6.22060 -0.22445 1.45490 1.47317 1.53628 2.06824 2.47035 2.66698 3.08464 3.22462 3.47891 3.72190 3.79897 3.90932 4.00922 4.06564 4.13993 4.22604 4.36704 4.44602 4.47088 4.55615 4.59292 4.67304 4.68938 4.73216 4.76221 4.83279 4.92917 4.98533 4.99499 5.02371 5.07115 5.11156 5.14326 5.19362 5.23274 5.30657 5.33908 5.39828 5.43537 5.50636 5.58588 5.83136 5.94477 6.04923 6.17246 6.18180 6.32350 6.87852 7.46678 8.98041 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009674 B = 0.005505 C = 0.004261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.672991 B = 5084.779547 C = 6569.669246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.262 3.738 5 C -0.529 4.529 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.928 5.928 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.294 1.294 12 H -0.260 1.260 13 S 2.798 3.202 14 O -1.007 7.007 15 O -1.020 7.020 16 N -1.113 6.113 17 C 0.129 3.871 18 C -0.088 4.088 19 H 0.084 0.916 20 C -0.143 4.143 21 C 0.057 3.943 22 N -0.544 5.544 23 C 0.034 3.966 24 C -0.124 4.124 25 C -0.124 4.124 26 C 0.032 3.968 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.015 0.985 34 H 0.263 0.737 35 H 0.419 0.581 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.055 0.945 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.663 -2.166 11.032 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.138 3.862 5 C -0.568 4.568 6 H 0.094 0.906 7 C -0.184 4.184 8 N -0.568 5.568 9 Si 0.776 3.224 10 H -0.193 1.193 11 H -0.220 1.220 12 H -0.185 1.185 13 S 2.806 3.194 14 O -0.992 6.992 15 O -1.004 7.004 16 N -0.876 5.876 17 C 0.003 3.997 18 C -0.109 4.109 19 H 0.102 0.898 20 C -0.201 4.201 21 C -0.072 4.072 22 N -0.269 5.269 23 C -0.094 4.094 24 C -0.162 4.162 25 C -0.162 4.162 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.071 0.929 35 H 0.256 0.744 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.110 0.890 46 H 0.076 0.924 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.466 -1.436 11.032 15.274 hybrid contribution 1.351 -0.355 -0.694 1.559 sum 11.816 -1.791 10.338 15.802 Atomic orbital electron populations 1.22192 0.96095 1.03204 1.01194 1.21231 0.94510 0.81330 1.03279 1.57611 1.79391 1.24011 1.22713 1.18700 0.96604 0.90691 0.80203 1.21688 1.06573 1.23737 1.04810 0.90646 1.25718 0.99874 0.94810 0.97954 1.70067 1.39307 1.29116 1.18339 0.85720 0.80616 0.78384 0.77700 1.19299 1.21961 1.18496 1.01123 0.73346 0.72691 0.72209 1.93518 1.73243 1.74757 1.57643 1.93529 1.86303 1.34176 1.86357 1.55596 1.24556 1.66485 1.40970 1.21362 0.88140 0.97816 0.92338 1.21362 0.92751 0.97617 0.99138 0.89778 1.21811 1.02008 0.93982 1.02323 1.22282 0.96904 0.88003 1.00011 1.64688 1.46718 1.02693 1.12776 1.23256 1.01068 0.94652 0.90395 1.22494 0.99648 0.95446 0.98640 1.22367 1.00352 0.95907 0.97582 1.22873 0.93863 0.94590 0.98240 0.93583 0.93488 0.89016 0.90051 0.89577 0.96707 0.96658 0.92858 0.74446 0.91200 0.92559 0.91553 0.92815 0.90647 0.92329 0.91935 0.91264 0.92142 0.88952 0.92406 0.89567 0.91185 0.92687 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 10.24 71.98 0.74 -4.56 16 2 C 0.12 4.18 6.04 86.38 0.52 4.70 16 3 N -1.00 -41.59 2.84 -519.86 -1.48 -43.07 16 4 C 0.26 13.34 5.47 85.63 0.47 13.81 16 5 C -0.53 -27.05 7.86 25.60 0.20 -26.84 16 6 H 0.08 3.61 6.63 -2.91 -0.02 3.59 16 7 C 0.02 0.85 5.46 84.65 0.46 1.31 16 8 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 9 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 13 S 2.80 113.16 6.12 -56.49 -0.35 112.82 16 14 O -1.01 -40.57 17.03 -128.00 -2.18 -42.75 16 15 O -1.02 -50.10 16.13 -128.00 -2.06 -52.17 16 16 N -1.11 -36.13 5.92 -187.49 -1.11 -37.24 16 17 C 0.13 4.49 5.46 86.38 0.47 4.96 16 18 C -0.09 -2.25 2.33 -10.79 -0.03 -2.28 16 19 H 0.08 1.96 6.66 -2.39 -0.02 1.94 16 20 C -0.14 -2.90 9.12 71.98 0.66 -2.25 16 21 C 0.06 1.48 4.21 86.30 0.36 1.84 16 22 N -0.54 -15.65 4.71 -883.03 -4.16 -19.80 16 23 C 0.03 0.80 5.36 86.65 0.46 1.27 16 24 C -0.12 -2.66 7.06 31.80 0.22 -2.44 16 25 C -0.12 -2.51 6.93 31.47 0.22 -2.29 16 26 C 0.03 0.80 6.70 86.45 0.58 1.38 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.59 8.10 -2.39 -0.02 1.57 16 29 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.08 2.77 8.08 -2.39 -0.02 2.75 16 31 H 0.09 2.54 7.54 -2.39 -0.02 2.52 16 32 H 0.01 0.81 8.10 -2.39 -0.02 0.79 16 33 H 0.02 0.89 6.88 -2.38 -0.02 0.88 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 35 H 0.42 10.63 7.35 -96.74 -0.71 9.91 16 36 H 0.07 2.72 5.36 -2.39 -0.01 2.71 16 37 H 0.06 2.36 7.17 -2.39 -0.02 2.35 16 38 H 0.07 1.24 6.77 -2.39 -0.02 1.22 16 39 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.23 7.98 -2.39 -0.02 1.21 16 42 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 1.84 7.55 -2.39 -0.02 1.82 16 44 H 0.06 1.18 8.01 -2.39 -0.02 1.16 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 49 H 0.05 1.18 7.68 -2.39 -0.02 1.16 16 50 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -68.55 398.72 -3.49 -72.04 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.20 Total: 31.69 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.34 Total: -11.38 kcal Atomic # 7 Polarization: -147.47 SS G_CDS: -6.46 Total: -153.93 kcal Atomic # 8 Polarization: -90.67 SS G_CDS: -4.24 Total: -94.91 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Atomic # 16 Polarization: 113.16 SS G_CDS: -0.35 Total: 112.82 kcal Total: -68.55 -3.49 -72.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917929.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.149 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds