Wall clock time and date at job start Tue Mar 31 2020 17:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47178 * 2 1 4 4 C 1.46497 * 119.99909 * 275.00248 * 3 2 1 5 5 C 1.50700 * 109.47329 * 280.11483 * 4 3 2 6 6 H 1.08006 * 119.99813 * 4.08954 * 5 4 3 7 7 C 1.37872 * 120.00241 * 184.08448 * 5 4 3 8 8 N 1.31513 * 120.00211 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00094 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47050 * 119.99949 * 9 7 5 12 12 H 1.48493 * 109.47007 * 240.00218 * 9 7 5 13 13 S 1.65602 * 120.00095 * 95.00187 * 3 2 1 14 14 O 1.42095 * 106.39808 * 330.11676 * 13 3 2 15 15 O 1.42097 * 106.40015 * 197.19841 * 13 3 2 16 16 N 1.65596 * 107.21730 * 83.65390 * 13 3 2 17 17 C 1.46504 * 119.99524 * 65.50814 * 16 13 3 18 18 C 1.53002 * 109.46960 * 165.59995 * 17 16 13 19 19 H 1.09000 * 109.47618 * 54.99515 * 18 17 16 20 20 C 1.53002 * 109.46877 * 294.99791 * 18 17 16 21 21 C 1.52998 * 109.47288 * 174.99942 * 18 17 16 22 22 N 1.46899 * 109.46998 * 184.99899 * 21 18 17 23 23 C 1.48526 * 111.00119 * 52.60475 * 22 21 18 24 24 C 1.54940 * 103.22810 * 159.71932 * 23 22 21 25 25 C 1.54595 * 102.92243 * 322.58677 * 24 23 22 26 26 C 1.47901 * 110.99785 * 170.00361 * 22 21 18 27 27 H 1.09001 * 109.47289 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46499 * 300.00083 * 1 2 3 30 30 H 1.09005 * 109.46966 * 240.00035 * 2 1 3 31 31 H 1.09001 * 109.47289 * 120.00158 * 2 1 3 32 32 H 1.09004 * 109.47444 * 40.11869 * 4 3 2 33 33 H 1.09001 * 109.47292 * 160.11678 * 4 3 2 34 34 H 0.96998 * 120.00464 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00585 * 245.50463 * 16 13 3 36 36 H 1.08994 * 109.47365 * 45.60104 * 17 16 13 37 37 H 1.08997 * 109.47270 * 285.59528 * 17 16 13 38 38 H 1.09004 * 109.46923 * 60.00270 * 20 18 17 39 39 H 1.09008 * 109.47186 * 179.97438 * 20 18 17 40 40 H 1.08999 * 109.47294 * 300.00199 * 20 18 17 41 41 H 1.09001 * 109.47242 * 304.99926 * 21 18 17 42 42 H 1.09004 * 109.46794 * 64.99818 * 21 18 17 43 43 H 1.09002 * 110.66923 * 278.15135 * 23 22 21 44 44 H 1.09000 * 110.67040 * 41.28365 * 23 22 21 45 45 H 1.08994 * 110.72726 * 204.22579 * 24 23 22 46 46 H 1.09000 * 110.72230 * 80.94390 * 24 23 22 47 47 H 1.09002 * 110.30806 * 263.04295 * 25 24 23 48 48 H 1.08994 * 110.30882 * 140.87017 * 25 24 23 49 49 H 1.09007 * 109.91617 * 333.50001 * 26 22 21 50 50 H 1.08994 * 109.92155 * 94.60458 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4376 1.6936 -1.9436 6 1 4.0490 0.9138 -1.5138 7 6 3.8276 2.3091 -3.1140 8 7 3.0835 3.2589 -3.6371 9 14 5.4132 1.7940 -3.9568 10 1 6.0618 0.7124 -3.1728 11 1 5.1091 1.2997 -5.3237 12 1 6.3287 2.9599 -4.0442 13 16 2.4123 2.1202 1.4287 14 8 1.5772 1.5426 2.4227 15 8 2.4516 3.5153 1.1613 16 7 3.9621 1.6716 1.8016 17 6 5.0731 2.0946 0.9454 18 6 6.3968 1.8692 1.6790 19 1 6.4640 0.8285 1.9959 20 6 6.4614 2.7810 2.9059 21 6 7.5613 2.1930 0.7410 22 7 8.8301 1.8633 1.4038 23 6 8.8180 0.4679 1.9126 24 6 10.3227 0.1371 2.0764 25 6 10.9664 0.8445 0.8618 26 6 9.9598 1.9355 0.4519 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3118 1.8788 -1.9111 33 1 2.1834 3.1802 -1.0656 34 1 3.3576 3.6917 -4.4607 35 1 4.1344 1.1289 2.5868 36 1 4.9656 3.1526 0.7068 37 1 5.0645 1.5117 0.0244 38 1 5.6318 2.5503 3.5742 39 1 7.4043 2.6202 3.4289 40 1 6.3942 3.8218 2.5892 41 1 7.4657 1.6067 -0.1729 42 1 7.5452 3.2548 0.4949 43 1 8.3053 0.4131 2.8730 44 1 8.3535 -0.2016 1.1887 45 1 10.4886 -0.9391 2.0284 46 1 10.7083 0.5465 3.0101 47 1 11.1112 0.1373 0.0451 48 1 11.9173 1.2948 1.1464 49 1 9.6038 1.7503 -0.5616 50 1 10.4294 2.9176 0.5067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336917930.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:49 Heat of formation + Delta-G solvation = -87.782493 kcal Electronic energy + Delta-G solvation = -28874.618420 eV Core-core repulsion = 25062.946676 eV Total energy + Delta-G solvation = -3811.671744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.27392 -36.73274 -36.38714 -35.98774 -35.15618 -33.05369 -32.72844 -30.40770 -29.91796 -28.92683 -26.67335 -26.30080 -24.52523 -23.16516 -21.74086 -21.64735 -20.88930 -19.73167 -18.65669 -17.07782 -16.84731 -16.47803 -16.24800 -16.10434 -15.45213 -14.98392 -14.86071 -14.32865 -14.17680 -13.87443 -13.64532 -13.30482 -13.25044 -12.92462 -12.58613 -12.37997 -12.25266 -12.06622 -12.00596 -11.70277 -11.66657 -11.58856 -11.50795 -11.37347 -11.26767 -11.26521 -11.09978 -10.96430 -10.92662 -10.74563 -10.54361 -10.51359 -10.49733 -10.35248 -10.02881 -9.79470 -8.91845 -8.53202 -8.45439 -8.05030 -6.14169 -4.20407 1.34388 3.18685 3.26755 3.28323 3.56479 3.94220 4.21032 4.31306 4.50435 4.55501 4.80631 4.98001 5.07212 5.08074 5.17088 5.19808 5.28896 5.35770 5.42117 5.54032 5.61847 5.65969 5.68011 5.75011 5.76617 5.80364 5.81836 5.86485 5.94584 5.95314 6.04023 6.07773 6.13603 6.25811 6.29577 6.34536 6.50516 6.57166 6.68818 6.73151 6.83541 6.99562 7.31023 7.39172 7.47005 7.69891 7.83712 8.13956 8.83962 9.44890 10.93911 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004644 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.113240 B = 6028.315020 C = 7823.452874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.786 3.214 14 O -1.002 7.002 15 O -0.979 6.979 16 N -1.128 6.128 17 C 0.122 3.878 18 C -0.096 4.096 19 H 0.073 0.927 20 C -0.138 4.138 21 C 0.049 3.951 22 N -0.513 5.513 23 C 0.031 3.969 24 C -0.124 4.124 25 C -0.131 4.131 26 C 0.032 3.968 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.034 0.966 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.046 0.954 45 H 0.068 0.932 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.069 0.931 49 H 0.046 0.954 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.416 -6.796 9.672 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.715 3.285 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.793 3.207 14 O -0.986 6.986 15 O -0.962 6.962 16 N -0.887 5.887 17 C -0.004 4.004 18 C -0.116 4.116 19 H 0.092 0.908 20 C -0.196 4.196 21 C -0.080 4.080 22 N -0.238 5.238 23 C -0.097 4.097 24 C -0.162 4.162 25 C -0.169 4.169 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.064 0.936 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.857 -5.555 10.250 15.267 hybrid contribution 1.073 -1.309 -1.358 2.170 sum 10.930 -6.864 8.892 15.673 Atomic orbital electron populations 1.22214 0.96982 1.01291 1.02497 1.20934 0.93636 0.82941 1.01891 1.57725 1.78646 1.22900 1.24115 1.19212 0.97164 0.92605 0.78950 1.21549 1.07248 1.20610 1.08195 0.91838 1.24934 0.96948 0.94787 0.97067 1.69936 1.37831 1.24292 1.20384 0.86617 0.83669 0.78492 0.79688 1.19767 1.20960 1.20794 1.01715 0.72604 0.73731 0.72601 1.93544 1.65609 1.79814 1.59680 1.93575 1.86543 1.30928 1.85159 1.55946 1.25153 1.69770 1.37838 1.21405 0.84309 1.01663 0.93049 1.21400 0.93480 1.00469 0.96219 0.90837 1.21746 1.01336 0.99549 0.96954 1.22337 0.88204 1.02173 0.95251 1.64802 1.03065 1.23046 1.32851 1.23263 0.96456 0.89437 1.00507 1.22477 0.95158 0.99916 0.98636 1.22390 0.98803 0.97585 0.98109 1.22887 0.92229 0.99661 0.94781 0.92106 0.92492 0.92472 0.90247 0.92270 0.94841 0.92603 0.92622 0.76315 0.90222 0.89789 0.93152 0.91980 0.92540 0.93924 0.89920 0.89913 0.93611 0.91309 0.90880 0.91671 0.91181 0.93610 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.27 6.02 -4.04 -0.02 2.25 16 3 N -0.99 -20.01 2.84 -115.66 -0.33 -20.34 16 4 C 0.24 5.87 5.46 -5.19 -0.03 5.84 16 5 C -0.54 -13.39 8.51 -34.44 -0.29 -13.68 16 6 H 0.06 1.51 6.47 -52.48 -0.34 1.17 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.79 13.29 55.43 0.74 -24.05 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 S 2.79 54.63 6.07 -107.50 -0.65 53.98 16 14 O -1.00 -20.34 17.17 -57.17 -0.98 -21.32 16 15 O -0.98 -22.79 16.00 -57.17 -0.92 -23.71 16 16 N -1.13 -17.86 5.59 -10.61 -0.06 -17.92 16 17 C 0.12 1.99 5.60 -4.04 -0.02 1.96 16 18 C -0.10 -1.24 2.10 -90.62 -0.19 -1.43 16 19 H 0.07 0.88 6.52 -51.93 -0.34 0.54 16 20 C -0.14 -1.72 8.96 37.16 0.33 -1.38 16 21 C 0.05 0.65 4.42 -3.83 -0.02 0.63 16 22 N -0.51 -6.04 4.85 -230.45 -1.12 -7.16 16 23 C 0.03 0.32 5.09 -1.90 -0.01 0.31 16 24 C -0.12 -1.07 7.06 -24.87 -0.18 -1.25 16 25 C -0.13 -1.16 6.93 -25.37 -0.18 -1.33 16 26 C 0.03 0.35 6.70 -2.75 -0.02 0.33 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.95 7.97 -51.93 -0.41 0.53 16 30 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 31 H 0.06 0.89 7.78 -51.93 -0.40 0.49 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 1.51 6.77 -51.93 -0.35 1.16 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.40 5.26 8.34 -34.47 -0.29 4.97 16 36 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 37 H 0.08 1.50 5.86 -51.93 -0.30 1.20 16 38 H 0.05 0.60 7.52 -51.93 -0.39 0.21 16 39 H 0.06 0.72 7.75 -51.92 -0.40 0.32 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.04 0.61 7.81 -51.93 -0.41 0.20 16 42 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.08 0.81 7.56 -51.93 -0.39 0.42 16 44 H 0.05 0.50 8.01 -51.93 -0.42 0.08 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.05 0.53 7.57 -51.93 -0.39 0.13 16 50 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 400.64 15.07 6.04 6.04 Total: -1.00 -30.44 400.64 -11.66 -42.11 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -9.02 Total: 5.87 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -0.34 Total: -8.44 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -0.77 Total: -69.46 kcal Atomic # 8 Polarization: -43.13 SS G_CDS: -1.90 Total: -45.03 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 54.63 SS G_CDS: -0.65 Total: 53.98 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.44 -11.66 -42.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917930.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.676 kcal (2) G-P(sol) polarization free energy of solvation -30.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds