Wall clock time and date at job start Tue Mar 31 2020 17:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.47178 * 2 1 4 4 C 1.46497 * 119.99909 * 275.00248 * 3 2 1 5 5 C 1.50700 * 109.47329 * 280.11483 * 4 3 2 6 6 H 1.08006 * 119.99813 * 4.08954 * 5 4 3 7 7 C 1.37872 * 120.00241 * 184.08448 * 5 4 3 8 8 N 1.31513 * 120.00211 * 0.02562 * 7 5 4 9 9 Si 1.86807 * 120.00094 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46965 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47050 * 119.99949 * 9 7 5 12 12 H 1.48493 * 109.47007 * 240.00218 * 9 7 5 13 13 S 1.65602 * 120.00095 * 95.00187 * 3 2 1 14 14 O 1.42095 * 106.39808 * 330.11676 * 13 3 2 15 15 O 1.42097 * 106.40015 * 197.19841 * 13 3 2 16 16 N 1.65596 * 107.21730 * 83.65390 * 13 3 2 17 17 C 1.46504 * 119.99524 * 65.50814 * 16 13 3 18 18 C 1.53002 * 109.46960 * 165.59995 * 17 16 13 19 19 H 1.09000 * 109.47618 * 54.99515 * 18 17 16 20 20 C 1.53002 * 109.46877 * 294.99791 * 18 17 16 21 21 C 1.52998 * 109.47288 * 174.99942 * 18 17 16 22 22 N 1.46899 * 109.46998 * 184.99899 * 21 18 17 23 23 C 1.48526 * 111.00119 * 52.60475 * 22 21 18 24 24 C 1.54940 * 103.22810 * 159.71932 * 23 22 21 25 25 C 1.54595 * 102.92243 * 322.58677 * 24 23 22 26 26 C 1.47901 * 110.99785 * 170.00361 * 22 21 18 27 27 H 1.09001 * 109.47289 * 59.99842 * 1 2 3 28 28 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46499 * 300.00083 * 1 2 3 30 30 H 1.09005 * 109.46966 * 240.00035 * 2 1 3 31 31 H 1.09001 * 109.47289 * 120.00158 * 2 1 3 32 32 H 1.09004 * 109.47444 * 40.11869 * 4 3 2 33 33 H 1.09001 * 109.47292 * 160.11678 * 4 3 2 34 34 H 0.96998 * 120.00464 * 180.02562 * 8 7 5 35 35 H 0.96995 * 120.00585 * 245.50463 * 16 13 3 36 36 H 1.08994 * 109.47365 * 45.60104 * 17 16 13 37 37 H 1.08997 * 109.47270 * 285.59528 * 17 16 13 38 38 H 1.09004 * 109.46923 * 60.00270 * 20 18 17 39 39 H 1.09008 * 109.47186 * 179.97438 * 20 18 17 40 40 H 1.08999 * 109.47294 * 300.00199 * 20 18 17 41 41 H 1.09001 * 109.47242 * 304.99926 * 21 18 17 42 42 H 1.09004 * 109.46794 * 64.99818 * 21 18 17 43 43 H 1.09002 * 110.66923 * 278.15135 * 23 22 21 44 44 H 1.09000 * 110.67040 * 41.28365 * 23 22 21 45 45 H 1.08994 * 110.72726 * 204.22579 * 24 23 22 46 46 H 1.09000 * 110.72230 * 80.94390 * 24 23 22 47 47 H 1.09002 * 110.30806 * 263.04295 * 25 24 23 48 48 H 1.08994 * 110.30882 * 140.87017 * 25 24 23 49 49 H 1.09007 * 109.91617 * 333.50001 * 26 22 21 50 50 H 1.08994 * 109.92155 * 94.60458 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2639 5 6 3.4376 1.6936 -1.9436 6 1 4.0490 0.9138 -1.5138 7 6 3.8276 2.3091 -3.1140 8 7 3.0835 3.2589 -3.6371 9 14 5.4132 1.7940 -3.9568 10 1 6.0618 0.7124 -3.1728 11 1 5.1091 1.2997 -5.3237 12 1 6.3287 2.9599 -4.0442 13 16 2.4123 2.1202 1.4287 14 8 1.5772 1.5426 2.4227 15 8 2.4516 3.5153 1.1613 16 7 3.9621 1.6716 1.8016 17 6 5.0731 2.0946 0.9454 18 6 6.3968 1.8692 1.6790 19 1 6.4640 0.8285 1.9959 20 6 6.4614 2.7810 2.9059 21 6 7.5613 2.1930 0.7410 22 7 8.8301 1.8633 1.4038 23 6 8.8180 0.4679 1.9126 24 6 10.3227 0.1371 2.0764 25 6 10.9664 0.8445 0.8618 26 6 9.9598 1.9355 0.4519 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3118 1.8788 -1.9111 33 1 2.1834 3.1802 -1.0656 34 1 3.3576 3.6917 -4.4607 35 1 4.1344 1.1289 2.5868 36 1 4.9656 3.1526 0.7068 37 1 5.0645 1.5117 0.0244 38 1 5.6318 2.5503 3.5742 39 1 7.4043 2.6202 3.4289 40 1 6.3942 3.8218 2.5892 41 1 7.4657 1.6067 -0.1729 42 1 7.5452 3.2548 0.4949 43 1 8.3053 0.4131 2.8730 44 1 8.3535 -0.2016 1.1887 45 1 10.4886 -0.9391 2.0284 46 1 10.7083 0.5465 3.0101 47 1 11.1112 0.1373 0.0451 48 1 11.9173 1.2948 1.1464 49 1 9.6038 1.7503 -0.5616 50 1 10.4294 2.9176 0.5067 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336917930.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:48 Heat of formation + Delta-G solvation = -109.348306 kcal Electronic energy + Delta-G solvation = -28875.553584 eV Core-core repulsion = 25062.946676 eV Total energy + Delta-G solvation = -3812.606908 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.17361 -38.32660 -37.74096 -37.52014 -36.86612 -34.67132 -34.17864 -31.50257 -31.35942 -29.71675 -28.50314 -27.42797 -25.65585 -24.93940 -23.26355 -22.60482 -21.68377 -20.86583 -20.13591 -18.64760 -18.58613 -18.21038 -17.48962 -16.97267 -16.94543 -16.48327 -16.01561 -15.88999 -15.26306 -15.13656 -14.88526 -14.72740 -14.62253 -14.17158 -13.81188 -13.67412 -13.63365 -13.40597 -13.35997 -13.23445 -13.12450 -13.01357 -12.91966 -12.74208 -12.67138 -12.59646 -12.29568 -12.23685 -12.13415 -12.05234 -11.91337 -11.75546 -11.60585 -11.55708 -11.52377 -11.37877 -10.57920 -10.34361 -9.76783 -9.37663 -8.15254 -6.27741 -0.26195 1.40000 1.42134 1.51903 2.02711 2.41616 2.63778 3.02528 3.17315 3.48900 3.69730 3.78391 3.92013 3.96181 4.02356 4.06779 4.20995 4.39341 4.42831 4.47345 4.50263 4.59084 4.64897 4.67921 4.73457 4.75703 4.81852 4.89919 4.94671 4.99743 5.00288 5.06042 5.09323 5.15138 5.18218 5.23188 5.30386 5.32996 5.36548 5.43317 5.47884 5.55201 5.79880 5.92782 5.97390 6.05168 6.13530 6.26515 6.84398 7.41670 8.93505 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010113 B = 0.004644 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.113240 B = 6028.315020 C = 7823.452874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.014 3.986 8 N -0.929 5.929 9 Si 0.950 3.050 10 H -0.255 1.255 11 H -0.284 1.284 12 H -0.284 1.284 13 S 2.799 3.201 14 O -1.006 7.006 15 O -1.019 7.019 16 N -1.110 6.110 17 C 0.125 3.875 18 C -0.084 4.084 19 H 0.093 0.907 20 C -0.135 4.135 21 C 0.052 3.948 22 N -0.517 5.517 23 C 0.026 3.974 24 C -0.119 4.119 25 C -0.127 4.127 26 C 0.026 3.974 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.422 0.578 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.042 0.958 41 H 0.030 0.970 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.040 0.960 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.034 0.966 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.336 -9.181 11.007 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.571 4.571 6 H 0.095 0.905 7 C -0.186 4.186 8 N -0.569 5.569 9 Si 0.775 3.225 10 H -0.179 1.179 11 H -0.210 1.210 12 H -0.210 1.210 13 S 2.807 3.193 14 O -0.990 6.990 15 O -1.003 7.003 16 N -0.873 5.873 17 C -0.002 4.002 18 C -0.104 4.104 19 H 0.111 0.889 20 C -0.192 4.192 21 C -0.078 4.078 22 N -0.241 5.241 23 C -0.102 4.102 24 C -0.157 4.157 25 C -0.166 4.166 26 C -0.102 4.102 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.258 0.742 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.048 0.952 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.058 0.942 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.053 0.947 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.771 -7.981 11.623 18.367 hybrid contribution 0.446 -0.580 -1.716 1.865 sum 12.217 -8.561 9.907 17.908 Atomic orbital electron populations 1.22201 0.96075 1.03161 1.01327 1.21236 0.94533 0.81234 1.03272 1.57621 1.79348 1.24099 1.22634 1.18745 0.96492 0.91094 0.80223 1.21818 1.07206 1.20214 1.07812 0.90541 1.25744 1.00043 0.94819 0.97983 1.70073 1.39878 1.25876 1.21024 0.85632 0.79865 0.78440 0.78573 1.17869 1.20985 1.20956 1.01139 0.73170 0.72797 0.72204 1.93531 1.66331 1.79593 1.59519 1.93528 1.87299 1.33754 1.85669 1.55513 1.23649 1.69744 1.38360 1.21334 0.85918 0.99777 0.93135 1.21316 0.91339 1.01782 0.95993 0.88854 1.21716 1.02278 0.98560 0.96637 1.22238 0.89282 1.01280 0.94958 1.64810 1.02350 1.24248 1.32732 1.23366 0.97929 0.88336 1.00523 1.22479 0.93674 1.00846 0.98662 1.22391 0.98692 0.97040 0.98429 1.22971 0.92441 1.00654 0.94094 0.93521 0.89120 0.93377 0.90071 0.89586 0.96614 0.96149 0.92713 0.74198 0.92792 0.91222 0.92536 0.90690 0.93858 0.95212 0.91132 0.89138 0.94175 0.89857 0.90347 0.91213 0.89967 0.94747 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.39 16 2 C 0.12 4.02 6.02 86.38 0.52 4.54 16 3 N -1.00 -40.21 2.84 -519.82 -1.48 -41.69 16 4 C 0.26 12.87 5.46 85.63 0.47 13.34 16 5 C -0.53 -26.71 8.51 25.60 0.22 -26.50 16 6 H 0.08 3.58 6.47 -2.91 -0.02 3.56 16 7 C 0.01 0.71 5.46 84.65 0.46 1.18 16 8 N -0.93 -53.41 13.29 21.45 0.28 -53.12 16 9 Si 0.95 41.02 29.54 68.60 2.03 43.05 16 10 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 13 S 2.80 109.42 6.07 -56.49 -0.34 109.08 16 14 O -1.01 -39.59 17.17 -128.00 -2.20 -41.79 16 15 O -1.02 -48.88 16.00 -128.00 -2.05 -50.93 16 16 N -1.11 -33.85 5.59 -187.49 -1.05 -34.90 16 17 C 0.13 4.02 5.60 86.38 0.48 4.50 16 18 C -0.08 -2.07 2.10 -10.79 -0.02 -2.10 16 19 H 0.09 1.96 6.52 -2.39 -0.02 1.95 16 20 C -0.13 -3.12 8.96 71.98 0.65 -2.48 16 21 C 0.05 1.33 4.42 86.30 0.38 1.71 16 22 N -0.52 -11.32 4.85 -883.01 -4.28 -15.60 16 23 C 0.03 0.47 5.09 86.65 0.44 0.91 16 24 C -0.12 -1.70 7.06 31.80 0.22 -1.47 16 25 C -0.13 -1.94 6.93 31.48 0.22 -1.72 16 26 C 0.03 0.53 6.70 86.45 0.58 1.11 16 27 H 0.05 1.53 8.10 -2.39 -0.02 1.51 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.05 1.54 7.97 -2.39 -0.02 1.52 16 30 H 0.08 2.64 8.09 -2.38 -0.02 2.62 16 31 H 0.09 2.36 7.78 -2.39 -0.02 2.34 16 32 H 0.02 0.83 8.10 -2.38 -0.02 0.81 16 33 H 0.02 1.16 6.77 -2.39 -0.02 1.15 16 34 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 35 H 0.42 9.95 8.34 -96.75 -0.81 9.14 16 36 H 0.05 2.02 7.75 -2.39 -0.02 2.01 16 37 H 0.07 2.46 5.86 -2.39 -0.01 2.44 16 38 H 0.06 1.23 7.52 -2.38 -0.02 1.21 16 39 H 0.07 1.56 7.75 -2.38 -0.02 1.54 16 40 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.03 0.84 7.81 -2.39 -0.02 0.82 16 42 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.09 1.49 7.56 -2.39 -0.02 1.47 16 44 H 0.04 0.78 8.01 -2.39 -0.02 0.76 16 45 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.03 0.76 7.57 -2.38 -0.02 0.75 16 50 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -66.28 400.64 -3.63 -69.92 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.10 Total: 27.36 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 5.35 Total: -11.37 kcal Atomic # 7 Polarization: -138.79 SS G_CDS: -6.52 Total: -145.31 kcal Atomic # 8 Polarization: -88.47 SS G_CDS: -4.25 Total: -92.72 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 109.42 SS G_CDS: -0.34 Total: 109.08 kcal Total: -66.28 -3.63 -69.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336917930.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.433 kcal (2) G-P(sol) polarization free energy of solvation -66.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds