Wall clock time and date at job start Tue Mar 31 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47043 * 2 1 4 4 C 1.46506 * 119.99936 * 293.83071 * 3 2 1 5 5 C 1.50693 * 109.46938 * 274.99785 * 4 3 2 6 6 H 1.08002 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99812 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47372 * 89.99144 * 9 7 5 11 11 H 1.48493 * 109.47095 * 209.99865 * 9 7 5 12 12 H 1.48504 * 109.46634 * 329.99538 * 9 7 5 13 13 S 1.65604 * 120.00382 * 113.82676 * 3 2 1 14 14 O 1.42100 * 106.40449 * 149.91268 * 13 3 2 15 15 O 1.42098 * 106.39732 * 16.99519 * 13 3 2 16 16 N 1.65593 * 107.21916 * 263.45497 * 13 3 2 17 17 C 1.46502 * 120.00257 * 63.15191 * 16 13 3 18 18 C 1.53004 * 109.47378 * 163.96439 * 17 16 13 19 19 N 1.46897 * 110.01400 * 307.02744 * 18 17 16 20 20 C 1.46899 * 111.00294 * 306.27701 * 19 18 17 21 21 C 1.46900 * 110.99815 * 182.32612 * 19 18 17 22 22 C 1.54267 * 110.03044 * 68.41604 * 18 17 16 23 23 C 1.54961 * 104.15964 * 95.75870 * 22 18 17 24 24 C 1.54888 * 102.77866 * 37.88342 * 23 22 18 25 25 C 1.53875 * 110.03358 * 185.63358 * 18 17 16 26 26 H 1.08995 * 109.47242 * 305.51399 * 1 2 3 27 27 H 1.08999 * 109.46795 * 65.52068 * 1 2 3 28 28 H 1.09001 * 109.46735 * 185.51587 * 1 2 3 29 29 H 1.08999 * 109.47783 * 239.99911 * 2 1 3 30 30 H 1.09001 * 109.46822 * 119.99478 * 2 1 3 31 31 H 1.08996 * 109.47052 * 35.00164 * 4 3 2 32 32 H 1.09001 * 109.46830 * 154.99718 * 4 3 2 33 33 H 0.97003 * 120.00325 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00174 * 243.14726 * 16 13 3 35 35 H 1.09004 * 109.47128 * 43.96293 * 17 16 13 36 36 H 1.09001 * 109.46960 * 283.96507 * 17 16 13 37 37 H 1.09003 * 109.46912 * 62.88270 * 20 19 18 38 38 H 1.09004 * 109.47081 * 302.89130 * 20 19 18 39 39 H 1.09001 * 109.47919 * 182.88558 * 20 19 18 40 40 H 1.09009 * 109.47049 * 186.35927 * 21 19 18 41 41 H 1.08993 * 109.47353 * 306.35840 * 21 19 18 42 42 H 1.09002 * 109.47434 * 66.36624 * 21 19 18 43 43 H 1.08999 * 110.48512 * 214.40283 * 22 18 17 44 44 H 1.08999 * 110.48792 * 337.04363 * 22 18 17 45 45 H 1.09005 * 110.71635 * 279.57034 * 23 22 18 46 46 H 1.08999 * 110.92523 * 156.29546 * 23 22 18 47 47 H 1.08996 * 110.48841 * 203.40837 * 24 23 22 48 48 H 1.09002 * 110.48480 * 80.76521 * 24 23 22 49 49 H 1.08999 * 110.02975 * 359.95417 * 25 18 17 50 50 H 1.09000 * 110.03012 * 121.38187 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7791 2.2427 -1.1606 5 6 2.8585 2.0138 -2.1870 6 1 3.6443 1.2985 -1.9939 7 6 2.8429 2.7176 -3.3725 8 7 3.7851 2.5182 -4.2681 9 14 1.4841 3.9553 -3.7062 10 1 1.8976 5.2911 -3.2064 11 1 1.2306 4.0301 -5.1674 12 1 0.2439 3.5284 -3.0098 13 16 2.8405 1.9689 1.3119 14 8 3.7450 2.9453 0.8142 15 8 3.2553 0.8375 2.0650 16 7 1.7464 2.7813 2.2525 17 6 0.6254 2.0604 2.8609 18 6 0.0122 2.9150 3.9720 19 7 1.0562 3.3389 4.9145 20 6 1.8115 2.1839 5.4179 21 6 0.4822 4.1155 6.0215 22 6 -0.6848 4.1501 3.3650 23 6 -2.1705 3.7262 3.2450 24 6 -2.3941 2.8931 4.5315 25 6 -1.0741 2.1158 4.7131 26 1 -0.3633 0.5969 0.8364 27 1 -0.3633 0.4258 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.8082 2.0054 -1.5953 32 1 1.7915 3.2865 -0.8469 33 1 3.7744 3.0135 -5.1020 34 1 1.8476 3.7345 2.4009 35 1 0.9831 1.1203 3.2810 36 1 -0.1294 1.8552 2.1018 37 1 2.3253 1.6966 4.5893 38 1 1.1259 1.4775 5.8860 39 1 2.5437 2.5204 6.1520 40 1 1.2859 4.5119 6.6422 41 1 -0.1069 4.9399 5.6198 42 1 -0.1579 3.4711 6.6239 43 1 -0.5858 5.0088 4.0290 44 1 -0.2714 4.3770 2.3823 45 1 -2.3263 3.1141 2.3565 46 1 -2.8243 4.5982 3.2309 47 1 -3.2277 2.2035 4.3994 48 1 -2.5713 3.5485 5.3843 49 1 -1.1649 1.1194 4.2806 50 1 -0.8265 2.0425 5.7721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336919681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:39 Heat of formation + Delta-G solvation = -65.699814 kcal Electronic energy + Delta-G solvation = -29743.519602 eV Core-core repulsion = 25932.805434 eV Total energy + Delta-G solvation = -3810.714167 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.29801 -36.63056 -36.18134 -35.17254 -35.11835 -34.45597 -32.53254 -30.15895 -29.21459 -28.87054 -27.64688 -27.22614 -24.46879 -23.52515 -23.00053 -21.37951 -20.91322 -18.87265 -18.64134 -17.44236 -17.01816 -16.90890 -16.56542 -15.86191 -15.44729 -15.10162 -14.82372 -14.81080 -14.20332 -13.94068 -13.79088 -13.52573 -13.29211 -13.16464 -12.71094 -12.48130 -12.41455 -12.20397 -12.00547 -11.93815 -11.89759 -11.80071 -11.51406 -11.39253 -11.38283 -11.34355 -11.24470 -11.11664 -11.07988 -10.86272 -10.72552 -10.54426 -10.47084 -10.35019 -10.09590 -9.51853 -9.21867 -8.55916 -8.42277 -8.09201 -6.04615 -4.03026 1.23852 3.28336 3.33296 3.35257 3.48486 3.73519 4.18078 4.25305 4.37848 4.40700 4.56008 4.88770 5.00256 5.00631 5.07148 5.11037 5.23331 5.24816 5.28075 5.31261 5.36769 5.39728 5.45048 5.49807 5.55179 5.62747 5.67313 5.67668 5.71798 5.75152 5.82816 5.85111 5.91385 5.96775 6.05276 6.11805 6.17195 6.28250 6.52185 6.56123 6.78234 6.90527 6.93785 7.11703 7.28740 7.52439 7.62334 8.53296 9.01351 9.54603 11.09197 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.004274 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.441680 B = 6549.390604 C = 7067.561836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.987 5.987 4 C 0.230 3.770 5 C -0.528 4.528 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 S 2.781 3.219 14 O -0.962 6.962 15 O -0.998 6.998 16 N -1.122 6.122 17 C 0.135 3.865 18 C 0.103 3.897 19 N -0.528 5.528 20 C 0.014 3.986 21 C 0.018 3.982 22 C -0.118 4.118 23 C -0.126 4.126 24 C -0.120 4.120 25 C -0.153 4.153 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.034 0.966 32 H 0.025 0.975 33 H 0.264 0.736 34 H 0.418 0.582 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.027 0.973 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.027 0.973 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.379 0.228 19.987 24.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.828 5.828 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.789 3.211 14 O -0.946 6.946 15 O -0.981 6.981 16 N -0.883 5.883 17 C 0.008 3.992 18 C 0.012 3.988 19 N -0.251 5.251 20 C -0.134 4.134 21 C -0.130 4.130 22 C -0.156 4.156 23 C -0.164 4.164 24 C -0.158 4.158 25 C -0.193 4.193 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.252 0.748 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.045 0.955 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.089 0.911 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.039 0.277 19.698 23.624 hybrid contribution -1.538 0.597 0.087 1.652 sum -14.577 0.874 19.785 24.591 Atomic orbital electron populations 1.22232 0.96981 1.01242 1.02351 1.21159 0.93584 0.82897 1.03377 1.57503 1.74546 1.19672 1.31072 1.19356 0.97796 0.88329 0.83877 1.21378 1.10552 1.24588 1.00146 0.90450 1.24868 0.95714 0.96495 0.95937 1.69898 1.33216 1.41979 1.08371 0.86937 0.82887 0.82614 0.77757 1.19876 1.21049 1.18993 1.01949 0.73426 0.73191 0.72563 1.93656 1.60257 1.61352 1.79289 1.93512 1.80560 1.52578 1.71478 1.56006 1.43635 1.21936 1.66695 1.21373 0.88977 0.94542 0.94342 1.21952 0.89863 0.94763 0.92221 1.62115 1.24485 1.22736 1.15738 1.22516 0.97702 0.92163 1.00973 1.22497 0.99371 0.97964 0.93170 1.22571 0.94402 0.96853 1.01770 1.22529 0.96186 0.99733 0.97921 1.22294 0.96874 0.98553 0.98031 1.22827 0.95523 0.99928 1.00981 0.93052 0.91857 0.92253 0.90321 0.90129 0.94826 0.95680 0.92601 0.74787 0.90854 0.91171 0.90077 0.95481 0.91525 0.91516 0.90992 0.95451 0.90466 0.90378 0.91128 0.91416 0.91673 0.91889 0.91101 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.25 9.89 37.16 0.37 -1.88 16 2 C 0.12 1.94 6.58 -4.04 -0.03 1.92 16 3 N -0.99 -19.54 2.92 -115.67 -0.34 -19.87 16 4 C 0.23 5.31 4.06 -5.19 -0.02 5.29 16 5 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.70 13.96 55.43 0.77 -26.92 16 9 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 13 S 2.78 53.86 6.05 -107.50 -0.65 53.21 16 14 O -0.96 -23.11 17.35 -57.17 -0.99 -24.10 16 15 O -1.00 -20.09 16.03 -57.17 -0.92 -21.01 16 16 N -1.12 -16.18 5.32 -10.61 -0.06 -16.24 16 17 C 0.14 1.59 4.06 -4.04 -0.02 1.57 16 18 C 0.10 1.01 0.26 -130.48 -0.03 0.97 16 19 N -0.53 -5.38 4.49 -234.09 -1.05 -6.43 16 20 C 0.01 0.15 8.77 60.06 0.53 0.68 16 21 C 0.02 0.15 8.90 60.06 0.53 0.68 16 22 C -0.12 -1.09 5.60 -25.03 -0.14 -1.23 16 23 C -0.13 -1.00 6.91 -24.70 -0.17 -1.17 16 24 C -0.12 -0.87 6.83 -25.08 -0.17 -1.04 16 25 C -0.15 -1.26 5.00 -25.62 -0.13 -1.38 16 26 H 0.05 0.60 5.86 -51.93 -0.30 0.30 16 27 H 0.06 0.91 7.13 -51.93 -0.37 0.54 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 30 H 0.08 1.26 6.69 -51.93 -0.35 0.91 16 31 H 0.03 0.74 5.95 -51.93 -0.31 0.43 16 32 H 0.03 0.58 7.22 -51.93 -0.37 0.21 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.42 5.70 7.92 -34.47 -0.27 5.43 16 35 H 0.07 0.88 6.51 -51.93 -0.34 0.54 16 36 H 0.07 0.77 5.89 -51.93 -0.31 0.47 16 37 H 0.08 1.03 6.44 -51.93 -0.33 0.69 16 38 H 0.03 0.25 6.76 -51.93 -0.35 -0.10 16 39 H 0.07 0.64 8.11 -51.93 -0.42 0.22 16 40 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 41 H 0.07 0.55 5.81 -51.93 -0.30 0.25 16 42 H 0.03 0.21 6.34 -51.93 -0.33 -0.12 16 43 H 0.08 0.67 5.72 -51.93 -0.30 0.38 16 44 H 0.08 0.81 7.19 -51.93 -0.37 0.44 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 50 H 0.07 0.57 5.15 -51.93 -0.27 0.30 16 LS Contribution 382.33 15.07 5.76 5.76 Total: -1.00 -34.30 382.33 -10.10 -44.40 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -8.25 Total: 3.79 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 0.28 Total: -8.96 kcal Atomic # 7 Polarization: -68.80 SS G_CDS: -0.67 Total: -69.47 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.91 Total: -45.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 53.86 SS G_CDS: -0.65 Total: 53.21 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.30 -10.10 -44.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336919681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.296 kcal (2) G-P(sol) polarization free energy of solvation -34.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds