Wall clock time and date at job start Tue Mar 31 2020 17:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47043 * 2 1 4 4 C 1.46506 * 119.99936 * 293.83071 * 3 2 1 5 5 C 1.50693 * 109.46938 * 274.99785 * 4 3 2 6 6 H 1.08002 * 120.00068 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99812 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00045 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00129 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47372 * 89.99144 * 9 7 5 11 11 H 1.48493 * 109.47095 * 209.99865 * 9 7 5 12 12 H 1.48504 * 109.46634 * 329.99538 * 9 7 5 13 13 S 1.65604 * 120.00382 * 113.82676 * 3 2 1 14 14 O 1.42100 * 106.40449 * 149.91268 * 13 3 2 15 15 O 1.42098 * 106.39732 * 16.99519 * 13 3 2 16 16 N 1.65593 * 107.21916 * 263.45497 * 13 3 2 17 17 C 1.46502 * 120.00257 * 63.15191 * 16 13 3 18 18 C 1.53004 * 109.47378 * 163.96439 * 17 16 13 19 19 N 1.46897 * 110.01400 * 307.02744 * 18 17 16 20 20 C 1.46899 * 111.00294 * 306.27701 * 19 18 17 21 21 C 1.46900 * 110.99815 * 182.32612 * 19 18 17 22 22 C 1.54267 * 110.03044 * 68.41604 * 18 17 16 23 23 C 1.54961 * 104.15964 * 95.75870 * 22 18 17 24 24 C 1.54888 * 102.77866 * 37.88342 * 23 22 18 25 25 C 1.53875 * 110.03358 * 185.63358 * 18 17 16 26 26 H 1.08995 * 109.47242 * 305.51399 * 1 2 3 27 27 H 1.08999 * 109.46795 * 65.52068 * 1 2 3 28 28 H 1.09001 * 109.46735 * 185.51587 * 1 2 3 29 29 H 1.08999 * 109.47783 * 239.99911 * 2 1 3 30 30 H 1.09001 * 109.46822 * 119.99478 * 2 1 3 31 31 H 1.08996 * 109.47052 * 35.00164 * 4 3 2 32 32 H 1.09001 * 109.46830 * 154.99718 * 4 3 2 33 33 H 0.97003 * 120.00325 * 180.02562 * 8 7 5 34 34 H 0.96999 * 120.00174 * 243.14726 * 16 13 3 35 35 H 1.09004 * 109.47128 * 43.96293 * 17 16 13 36 36 H 1.09001 * 109.46960 * 283.96507 * 17 16 13 37 37 H 1.09003 * 109.46912 * 62.88270 * 20 19 18 38 38 H 1.09004 * 109.47081 * 302.89130 * 20 19 18 39 39 H 1.09001 * 109.47919 * 182.88558 * 20 19 18 40 40 H 1.09009 * 109.47049 * 186.35927 * 21 19 18 41 41 H 1.08993 * 109.47353 * 306.35840 * 21 19 18 42 42 H 1.09002 * 109.47434 * 66.36624 * 21 19 18 43 43 H 1.08999 * 110.48512 * 214.40283 * 22 18 17 44 44 H 1.08999 * 110.48792 * 337.04363 * 22 18 17 45 45 H 1.09005 * 110.71635 * 279.57034 * 23 22 18 46 46 H 1.08999 * 110.92523 * 156.29546 * 23 22 18 47 47 H 1.08996 * 110.48841 * 203.40837 * 24 23 22 48 48 H 1.09002 * 110.48480 * 80.76521 * 24 23 22 49 49 H 1.08999 * 110.02975 * 359.95417 * 25 18 17 50 50 H 1.09000 * 110.03012 * 121.38187 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7791 2.2427 -1.1606 5 6 2.8585 2.0138 -2.1870 6 1 3.6443 1.2985 -1.9939 7 6 2.8429 2.7176 -3.3725 8 7 3.7851 2.5182 -4.2681 9 14 1.4841 3.9553 -3.7062 10 1 1.8976 5.2911 -3.2064 11 1 1.2306 4.0301 -5.1674 12 1 0.2439 3.5284 -3.0098 13 16 2.8405 1.9689 1.3119 14 8 3.7450 2.9453 0.8142 15 8 3.2553 0.8375 2.0650 16 7 1.7464 2.7813 2.2525 17 6 0.6254 2.0604 2.8609 18 6 0.0122 2.9150 3.9720 19 7 1.0562 3.3389 4.9145 20 6 1.8115 2.1839 5.4179 21 6 0.4822 4.1155 6.0215 22 6 -0.6848 4.1501 3.3650 23 6 -2.1705 3.7262 3.2450 24 6 -2.3941 2.8931 4.5315 25 6 -1.0741 2.1158 4.7131 26 1 -0.3633 0.5969 0.8364 27 1 -0.3633 0.4258 -0.9353 28 1 -0.3633 -1.0229 0.0988 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.8082 2.0054 -1.5953 32 1 1.7915 3.2865 -0.8469 33 1 3.7744 3.0135 -5.1020 34 1 1.8476 3.7345 2.4009 35 1 0.9831 1.1203 3.2810 36 1 -0.1294 1.8552 2.1018 37 1 2.3253 1.6966 4.5893 38 1 1.1259 1.4775 5.8860 39 1 2.5437 2.5204 6.1520 40 1 1.2859 4.5119 6.6422 41 1 -0.1069 4.9399 5.6198 42 1 -0.1579 3.4711 6.6239 43 1 -0.5858 5.0088 4.0290 44 1 -0.2714 4.3770 2.3823 45 1 -2.3263 3.1141 2.3565 46 1 -2.8243 4.5982 3.2309 47 1 -3.2277 2.2035 4.3994 48 1 -2.5713 3.5485 5.3843 49 1 -1.1649 1.1194 4.2806 50 1 -0.8265 2.0425 5.7721 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336919681.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:38 Heat of formation + Delta-G solvation = -92.731446 kcal Electronic energy + Delta-G solvation = -29744.691781 eV Core-core repulsion = 25932.805434 eV Total energy + Delta-G solvation = -3811.886347 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03460 -38.28698 -37.77759 -36.83911 -35.82692 -35.55077 -34.63725 -31.70428 -29.89341 -29.67428 -29.03210 -28.35896 -25.34842 -24.73231 -24.22700 -22.96773 -21.54483 -20.14430 -19.62210 -19.14466 -18.69338 -18.28184 -17.77202 -17.15233 -16.61273 -16.24039 -16.01672 -15.64622 -15.56760 -15.24249 -14.85809 -14.61008 -14.50663 -14.19946 -14.02652 -14.00116 -13.72817 -13.48899 -13.28129 -13.14267 -13.09975 -13.04501 -12.68099 -12.65620 -12.58726 -12.47906 -12.36886 -12.16991 -12.10127 -12.03880 -11.87934 -11.80746 -11.69285 -11.55552 -11.37473 -11.19938 -10.75711 -10.38192 -9.77201 -9.14148 -8.26364 -6.31498 -0.31088 1.37421 1.41907 1.50079 2.06343 2.37228 2.64020 3.02981 3.07489 3.43689 3.58414 3.67091 3.91225 3.94529 4.26026 4.29319 4.32317 4.37641 4.44699 4.47311 4.50536 4.55087 4.59003 4.69530 4.72174 4.75164 4.82493 4.84460 4.89476 4.90666 4.99633 5.05413 5.10377 5.10832 5.12830 5.15320 5.23680 5.29245 5.40260 5.47229 5.51311 5.53557 5.54562 5.79782 6.13994 6.18927 6.27077 6.36101 6.71302 7.30862 8.91622 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.004274 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.441680 B = 6549.390604 C = 7067.561836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.992 5.992 4 C 0.239 3.761 5 C -0.539 4.539 6 H 0.024 0.976 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.226 1.226 13 S 2.794 3.206 14 O -1.016 7.016 15 O -1.010 7.010 16 N -1.104 6.104 17 C 0.127 3.873 18 C 0.105 3.895 19 N -0.543 5.543 20 C 0.016 3.984 21 C 0.020 3.980 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.114 4.114 25 C -0.149 4.149 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.423 0.577 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.073 0.927 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.316 1.029 21.795 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.833 5.833 4 C 0.114 3.886 5 C -0.579 4.579 6 H 0.043 0.957 7 C -0.192 4.192 8 N -0.592 5.592 9 Si 0.765 3.235 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.148 1.148 13 S 2.803 3.197 14 O -1.000 7.000 15 O -0.993 6.993 16 N -0.868 5.868 17 C 0.001 3.999 18 C 0.014 3.986 19 N -0.267 5.267 20 C -0.132 4.132 21 C -0.128 4.128 22 C -0.157 4.157 23 C -0.161 4.161 24 C -0.152 4.152 25 C -0.189 4.189 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.260 0.740 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.088 0.912 49 H 0.092 0.908 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.988 1.046 21.537 27.450 hybrid contribution -0.208 0.253 -0.386 0.507 sum -17.196 1.299 21.151 27.290 Atomic orbital electron populations 1.22168 0.93569 1.03462 1.02711 1.21389 0.96438 0.81168 1.02831 1.57430 1.74743 1.20718 1.30394 1.19125 0.96649 0.89231 0.83587 1.21717 1.10794 1.23374 1.01987 0.95749 1.25954 0.98827 0.98973 0.95479 1.70084 1.36032 1.43829 1.09222 0.85785 0.80476 0.79084 0.78119 1.19517 1.20601 1.14804 1.01275 0.73392 0.72485 0.72580 1.93579 1.63006 1.62882 1.80485 1.93487 1.81152 1.53153 1.71553 1.55507 1.43732 1.22043 1.65511 1.21680 0.88123 0.94708 0.95406 1.21951 0.90055 0.94999 0.91615 1.62100 1.25132 1.22752 1.16697 1.22449 0.98069 0.92595 1.00107 1.22514 0.99609 0.97980 0.92679 1.22585 0.95287 0.96772 1.01097 1.22523 0.95201 1.00177 0.98222 1.22270 0.96444 0.98558 0.97886 1.22794 0.95367 0.99917 1.00823 0.91084 0.92691 0.89459 0.92520 0.89172 0.92401 0.95062 0.92459 0.74036 0.91039 0.89804 0.92618 0.94265 0.91093 0.91355 0.90333 0.94496 0.89950 0.91658 0.91333 0.90538 0.90751 0.91170 0.90834 0.90893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.80 9.89 71.98 0.71 -3.09 16 2 C 0.11 3.52 6.58 86.38 0.57 4.09 16 3 N -0.99 -39.17 2.92 -519.85 -1.52 -40.69 16 4 C 0.24 10.89 4.06 85.63 0.35 11.23 16 5 C -0.54 -31.72 9.94 25.60 0.25 -31.46 16 6 H 0.02 1.63 8.06 -2.91 -0.02 1.61 16 7 C 0.00 0.29 5.47 84.66 0.46 0.75 16 8 N -0.95 -61.03 13.96 21.45 0.30 -60.73 16 9 Si 0.94 42.80 27.47 68.60 1.88 44.68 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 H -0.23 -8.73 6.54 99.48 0.65 -8.08 16 13 S 2.79 109.39 6.05 -56.49 -0.34 109.04 16 14 O -1.02 -50.43 17.35 -128.00 -2.22 -52.65 16 15 O -1.01 -41.17 16.03 -128.00 -2.05 -43.23 16 16 N -1.10 -30.76 5.32 -187.47 -1.00 -31.75 16 17 C 0.13 2.72 4.06 86.38 0.35 3.07 16 18 C 0.11 1.79 0.26 4.25 0.00 1.79 16 19 N -0.54 -10.02 4.49 -894.54 -4.01 -14.03 16 20 C 0.02 0.31 8.77 127.69 1.12 1.43 16 21 C 0.02 0.27 8.90 127.69 1.14 1.41 16 22 C -0.12 -1.88 5.60 31.69 0.18 -1.70 16 23 C -0.12 -1.53 6.91 31.91 0.22 -1.31 16 24 C -0.11 -1.22 6.83 31.67 0.22 -1.00 16 25 C -0.15 -1.96 5.00 31.32 0.16 -1.81 16 26 H 0.07 1.40 5.86 -2.39 -0.01 1.38 16 27 H 0.05 1.41 7.13 -2.39 -0.02 1.39 16 28 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.09 2.76 6.69 -2.39 -0.02 2.74 16 31 H 0.06 2.38 5.95 -2.39 -0.01 2.37 16 32 H 0.03 1.40 7.22 -2.39 -0.02 1.39 16 33 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 34 H 0.42 11.19 7.92 -96.75 -0.77 10.42 16 35 H 0.07 1.58 6.51 -2.38 -0.02 1.57 16 36 H 0.08 1.58 5.89 -2.39 -0.01 1.56 16 37 H 0.05 1.38 6.44 -2.39 -0.02 1.36 16 38 H 0.04 0.65 6.76 -2.38 -0.02 0.64 16 39 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 40 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 0.98 5.81 -2.39 -0.01 0.97 16 42 H 0.04 0.44 6.34 -2.39 -0.02 0.43 16 43 H 0.08 1.21 5.72 -2.39 -0.01 1.19 16 44 H 0.06 1.20 7.19 -2.39 -0.02 1.18 16 45 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.07 0.94 7.67 -2.39 -0.02 0.92 16 50 H 0.07 0.94 5.15 -2.39 -0.01 0.93 16 Total: -1.00 -78.05 382.33 -3.12 -81.17 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: 0.12 Total: 24.80 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 5.72 Total: -16.60 kcal Atomic # 7 Polarization: -140.98 SS G_CDS: -6.23 Total: -147.21 kcal Atomic # 8 Polarization: -91.61 SS G_CDS: -4.27 Total: -95.88 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Atomic # 16 Polarization: 109.39 SS G_CDS: -0.34 Total: 109.04 kcal Total: -78.05 -3.12 -81.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336919681.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.564 kcal (2) G-P(sol) polarization free energy of solvation -78.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds