Wall clock time and date at job start Tue Mar 31 2020 17:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47086 * 2 1 4 4 C 1.46500 * 119.99964 * 274.04660 * 3 2 1 5 5 C 1.50705 * 109.46899 * 280.72077 * 4 3 2 6 6 H 1.07997 * 119.99597 * 3.23804 * 5 4 3 7 7 C 1.37877 * 119.99470 * 183.23725 * 5 4 3 8 8 N 1.31507 * 120.00639 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99348 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47120 * 89.99866 * 9 7 5 11 11 H 1.48501 * 109.47008 * 209.99558 * 9 7 5 12 12 H 1.48493 * 109.47005 * 330.00036 * 9 7 5 13 13 S 1.65596 * 120.00084 * 94.04010 * 3 2 1 14 14 O 1.42103 * 106.40328 * 336.42541 * 13 3 2 15 15 O 1.42102 * 106.40494 * 203.50095 * 13 3 2 16 16 N 1.65598 * 107.21726 * 89.96120 * 13 3 2 17 17 C 1.46505 * 119.99732 * 65.64519 * 16 13 3 18 18 C 1.53004 * 109.46723 * 164.57044 * 17 16 13 19 19 H 1.09002 * 109.50321 * 305.07096 * 18 17 16 20 20 C 1.53111 * 109.50462 * 65.19749 * 18 17 16 21 21 C 1.53125 * 109.15884 * 177.58961 * 20 18 17 22 22 C 1.53031 * 109.28184 * 302.34880 * 21 20 18 23 23 N 1.46839 * 109.52590 * 59.17831 * 22 21 20 24 24 C 1.46901 * 111.00071 * 174.16367 * 23 22 21 25 25 C 1.52995 * 109.47003 * 294.20740 * 24 23 22 26 26 C 1.46854 * 111.19845 * 298.25766 * 23 22 21 27 27 H 1.08995 * 109.46904 * 65.05126 * 1 2 3 28 28 H 1.09001 * 109.47002 * 185.05032 * 1 2 3 29 29 H 1.09002 * 109.47248 * 305.04709 * 1 2 3 30 30 H 1.08997 * 109.46822 * 240.00190 * 2 1 3 31 31 H 1.08999 * 109.47089 * 119.99645 * 2 1 3 32 32 H 1.09000 * 109.47498 * 40.72139 * 4 3 2 33 33 H 1.09005 * 109.47142 * 160.72214 * 4 3 2 34 34 H 0.97006 * 120.00309 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00272 * 245.91684 * 16 13 3 36 36 H 1.08998 * 109.47097 * 284.56969 * 17 16 13 37 37 H 1.09000 * 109.47396 * 44.57343 * 17 16 13 38 38 H 1.08999 * 109.52612 * 297.49539 * 20 18 17 39 39 H 1.08998 * 109.52612 * 57.68959 * 20 18 17 40 40 H 1.09004 * 109.49842 * 182.39933 * 21 20 18 41 41 H 1.09002 * 109.53319 * 62.31096 * 21 20 18 42 42 H 1.09005 * 109.45895 * 299.15857 * 22 21 20 43 43 H 1.09003 * 109.46164 * 179.20055 * 22 21 20 44 44 H 1.09001 * 109.47213 * 54.20781 * 24 23 22 45 45 H 1.09004 * 109.47038 * 174.21024 * 24 23 22 46 46 H 1.09004 * 109.47268 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47169 * 300.00068 * 25 24 23 48 48 H 1.08999 * 109.47443 * 60.00192 * 25 24 23 49 49 H 1.08999 * 109.46325 * 301.72697 * 26 23 22 50 50 H 1.09001 * 109.45339 * 181.75166 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1781 2.1016 -1.2656 5 6 3.4607 1.6718 -1.9298 6 1 4.0673 0.8980 -1.4829 7 6 3.8597 2.2664 -3.1081 8 7 3.1208 3.2082 -3.6526 9 14 5.4493 1.7330 -3.9318 10 1 5.1686 0.6224 -4.8769 11 1 6.0309 2.8798 -4.6746 12 1 6.4117 1.2727 -2.8990 13 16 2.3896 2.1282 1.4305 14 8 1.6477 1.4557 2.4388 15 8 2.2877 3.5253 1.1920 16 7 3.9868 1.8224 1.7431 17 6 5.0229 2.3673 0.8621 18 6 6.3826 2.2781 1.5580 19 1 6.3290 2.7754 2.5265 20 6 6.7593 0.8075 1.7575 21 6 8.1471 0.7269 2.3995 22 6 9.1585 1.4527 1.5095 23 7 8.7542 2.8553 1.3499 24 6 9.7737 3.6169 0.6161 25 6 11.0527 3.6940 1.4523 26 6 7.4452 2.9590 0.6923 27 1 -0.3633 0.4335 -0.9317 28 1 -0.3633 -1.0237 0.0905 29 1 -0.3634 0.5901 0.8413 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3365 1.8765 -1.9206 33 1 2.2109 3.1738 -1.0717 34 1 3.4018 3.6268 -4.4813 35 1 4.2363 1.2794 2.5071 36 1 5.0506 1.7937 -0.0643 37 1 4.7975 3.4098 0.6374 38 1 6.0281 0.3294 2.4093 39 1 6.7745 0.3012 0.7924 40 1 8.4390 -0.3180 2.5051 41 1 8.1223 1.1988 3.3818 42 1 9.1934 0.9713 0.5322 43 1 10.1452 1.4094 1.9709 44 1 9.9876 3.1198 -0.3300 45 1 9.4051 4.6243 0.4222 46 1 11.8091 4.2595 0.9080 47 1 10.8388 4.1911 2.3985 48 1 11.4213 2.6868 1.6463 49 1 7.4881 2.4706 -0.2812 50 1 7.1875 4.0099 0.5604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:23 Heat of formation + Delta-G solvation = -92.845373 kcal Electronic energy + Delta-G solvation = -29092.005344 eV Core-core repulsion = 25280.114057 eV Total energy + Delta-G solvation = -3811.891287 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.31521 -36.63445 -36.06744 -35.76772 -35.15697 -33.36515 -32.73779 -31.00151 -29.92686 -29.74369 -26.65342 -25.49283 -24.02911 -23.15827 -22.54449 -21.68595 -20.78465 -19.65999 -18.71678 -17.09392 -16.80608 -16.51855 -16.10549 -15.66288 -15.27315 -15.03756 -14.58750 -14.38647 -14.18412 -14.06621 -13.65271 -13.45316 -13.27617 -13.00868 -12.82875 -12.58070 -12.11647 -12.08143 -12.06345 -11.92265 -11.76362 -11.69094 -11.43318 -11.31109 -11.24177 -11.12200 -11.09445 -11.01786 -10.97279 -10.60193 -10.51261 -10.39632 -10.28041 -10.16442 -10.00370 -9.80346 -8.88103 -8.54691 -8.33492 -8.04945 -6.15277 -4.21512 1.35567 3.18461 3.26066 3.27194 3.57339 3.86508 4.21788 4.30301 4.75618 4.77694 4.91743 5.03774 5.06583 5.16832 5.18713 5.30530 5.35918 5.37489 5.42678 5.45925 5.62169 5.64775 5.74451 5.77776 5.78191 5.84381 5.86167 5.88657 5.93783 6.03754 6.07564 6.09058 6.19375 6.20046 6.30377 6.35406 6.46521 6.68118 6.69034 6.74249 7.07381 7.08973 7.32244 7.38910 7.48204 7.69393 7.82748 8.12893 8.82814 9.43559 10.92539 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.004840 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.339509 B = 5783.935919 C = 7470.439763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.786 3.214 14 O -1.002 7.002 15 O -0.981 6.981 16 N -1.128 6.128 17 C 0.119 3.881 18 C -0.087 4.087 19 H 0.081 0.919 20 C -0.118 4.118 21 C -0.115 4.115 22 C 0.052 3.948 23 N -0.538 5.538 24 C 0.048 3.952 25 C -0.147 4.147 26 C 0.059 3.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.034 0.966 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.032 0.968 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.053 0.947 49 H 0.041 0.959 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.151 -4.586 9.243 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.887 5.887 17 C -0.007 4.007 18 C -0.108 4.108 19 H 0.100 0.900 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.076 4.076 23 N -0.263 5.263 24 C -0.079 4.079 25 C -0.205 4.205 26 C -0.069 4.069 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.237 0.763 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 9.451 -3.589 9.901 14.150 hybrid contribution 1.363 -1.102 -1.459 2.281 sum 10.814 -4.691 8.442 14.499 Atomic orbital electron populations 1.22203 0.97049 1.01272 1.02321 1.20940 0.93530 0.82934 1.02047 1.57714 1.78811 1.22969 1.23876 1.19198 0.97101 0.92559 0.79018 1.21517 1.07117 1.21338 1.07681 0.91793 1.24929 0.96971 0.94794 0.96990 1.69928 1.37927 1.24991 1.19564 0.86671 0.83708 0.78275 0.79783 1.20663 1.21126 1.19814 1.01678 0.72636 0.73678 0.72589 1.93541 1.69908 1.76528 1.58686 1.93572 1.85999 1.31292 1.85624 1.55942 1.25468 1.68096 1.39200 1.21461 0.85631 1.00339 0.93264 1.21348 0.93519 0.95967 0.99922 0.90033 1.21656 0.96316 0.96353 1.01202 1.21576 0.94867 0.99429 0.99435 1.22141 0.98743 0.88080 0.98661 1.61953 1.02402 1.11291 1.50656 1.22065 0.92334 0.98605 0.94937 1.21797 0.96323 1.01690 1.00674 1.22076 0.88054 1.01297 0.95485 0.92188 0.92453 0.92677 0.90177 0.92058 0.94813 0.92790 0.92560 0.76274 0.89074 0.90382 0.91696 0.91716 0.91782 0.91239 0.95038 0.90831 0.95012 0.90619 0.92488 0.91887 0.92827 0.94098 0.90186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.27 6.01 -4.04 -0.02 2.24 16 3 N -0.99 -19.91 2.84 -115.66 -0.33 -20.24 16 4 C 0.24 5.83 5.47 -5.19 -0.03 5.80 16 5 C -0.54 -13.22 7.94 -34.44 -0.27 -13.49 16 6 H 0.06 1.51 6.72 -52.49 -0.35 1.16 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 9 Si 0.89 19.83 29.54 -169.99 -5.02 14.81 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 S 2.79 54.50 6.11 -107.50 -0.66 53.85 16 14 O -1.00 -20.26 17.09 -57.17 -0.98 -21.24 16 15 O -0.98 -22.69 16.10 -57.17 -0.92 -23.61 16 16 N -1.13 -18.10 5.94 -10.61 -0.06 -18.17 16 17 C 0.12 1.98 5.55 -4.04 -0.02 1.96 16 18 C -0.09 -1.19 2.46 -90.54 -0.22 -1.41 16 19 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 20 C -0.12 -1.42 5.13 -26.61 -0.14 -1.56 16 21 C -0.12 -1.21 6.09 -26.65 -0.16 -1.37 16 22 C 0.05 0.57 5.29 -3.84 -0.02 0.55 16 23 N -0.54 -6.57 4.66 -234.67 -1.09 -7.66 16 24 C 0.05 0.53 5.68 -3.83 -0.02 0.51 16 25 C -0.15 -1.31 9.84 37.15 0.37 -0.94 16 26 C 0.06 0.82 4.74 -3.83 -0.02 0.80 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.91 8.10 -51.93 -0.42 0.49 16 30 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 31 H 0.06 0.94 7.64 -51.93 -0.40 0.54 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.05 1.44 6.83 -51.93 -0.35 1.08 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.40 5.39 7.44 -34.47 -0.26 5.14 16 36 H 0.09 1.68 5.55 -51.93 -0.29 1.39 16 37 H 0.08 1.43 7.73 -51.93 -0.40 1.03 16 38 H 0.06 0.72 6.97 -51.93 -0.36 0.36 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.72 6.21 -51.93 -0.32 0.39 16 44 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 45 H 0.08 0.81 7.99 -51.93 -0.41 0.40 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.46 6.43 -51.93 -0.33 0.12 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.08 1.10 8.02 -51.93 -0.42 0.69 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -29.98 396.47 -11.58 -41.56 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -8.95 Total: 6.11 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.28 Total: -7.60 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -0.75 Total: -69.85 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.90 Total: -44.85 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.66 Total: 53.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.98 -11.58 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.286 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds