Wall clock time and date at job start Tue Mar 31 2020 17:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47086 * 2 1 4 4 C 1.46500 * 119.99964 * 274.04660 * 3 2 1 5 5 C 1.50705 * 109.46899 * 280.72077 * 4 3 2 6 6 H 1.07997 * 119.99597 * 3.23804 * 5 4 3 7 7 C 1.37877 * 119.99470 * 183.23725 * 5 4 3 8 8 N 1.31507 * 120.00639 * 359.97438 * 7 5 4 9 9 Si 1.86809 * 119.99348 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47120 * 89.99866 * 9 7 5 11 11 H 1.48501 * 109.47008 * 209.99558 * 9 7 5 12 12 H 1.48493 * 109.47005 * 330.00036 * 9 7 5 13 13 S 1.65596 * 120.00084 * 94.04010 * 3 2 1 14 14 O 1.42103 * 106.40328 * 336.42541 * 13 3 2 15 15 O 1.42102 * 106.40494 * 203.50095 * 13 3 2 16 16 N 1.65598 * 107.21726 * 89.96120 * 13 3 2 17 17 C 1.46505 * 119.99732 * 65.64519 * 16 13 3 18 18 C 1.53004 * 109.46723 * 164.57044 * 17 16 13 19 19 H 1.09002 * 109.50321 * 305.07096 * 18 17 16 20 20 C 1.53111 * 109.50462 * 65.19749 * 18 17 16 21 21 C 1.53125 * 109.15884 * 177.58961 * 20 18 17 22 22 C 1.53031 * 109.28184 * 302.34880 * 21 20 18 23 23 N 1.46839 * 109.52590 * 59.17831 * 22 21 20 24 24 C 1.46901 * 111.00071 * 174.16367 * 23 22 21 25 25 C 1.52995 * 109.47003 * 294.20740 * 24 23 22 26 26 C 1.46854 * 111.19845 * 298.25766 * 23 22 21 27 27 H 1.08995 * 109.46904 * 65.05126 * 1 2 3 28 28 H 1.09001 * 109.47002 * 185.05032 * 1 2 3 29 29 H 1.09002 * 109.47248 * 305.04709 * 1 2 3 30 30 H 1.08997 * 109.46822 * 240.00190 * 2 1 3 31 31 H 1.08999 * 109.47089 * 119.99645 * 2 1 3 32 32 H 1.09000 * 109.47498 * 40.72139 * 4 3 2 33 33 H 1.09005 * 109.47142 * 160.72214 * 4 3 2 34 34 H 0.97006 * 120.00309 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00272 * 245.91684 * 16 13 3 36 36 H 1.08998 * 109.47097 * 284.56969 * 17 16 13 37 37 H 1.09000 * 109.47396 * 44.57343 * 17 16 13 38 38 H 1.08999 * 109.52612 * 297.49539 * 20 18 17 39 39 H 1.08998 * 109.52612 * 57.68959 * 20 18 17 40 40 H 1.09004 * 109.49842 * 182.39933 * 21 20 18 41 41 H 1.09002 * 109.53319 * 62.31096 * 21 20 18 42 42 H 1.09005 * 109.45895 * 299.15857 * 22 21 20 43 43 H 1.09003 * 109.46164 * 179.20055 * 22 21 20 44 44 H 1.09001 * 109.47213 * 54.20781 * 24 23 22 45 45 H 1.09004 * 109.47038 * 174.21024 * 24 23 22 46 46 H 1.09004 * 109.47268 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47169 * 300.00068 * 25 24 23 48 48 H 1.08999 * 109.47443 * 60.00192 * 25 24 23 49 49 H 1.08999 * 109.46325 * 301.72697 * 26 23 22 50 50 H 1.09001 * 109.45339 * 181.75166 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1781 2.1016 -1.2656 5 6 3.4607 1.6718 -1.9298 6 1 4.0673 0.8980 -1.4829 7 6 3.8597 2.2664 -3.1081 8 7 3.1208 3.2082 -3.6526 9 14 5.4493 1.7330 -3.9318 10 1 5.1686 0.6224 -4.8769 11 1 6.0309 2.8798 -4.6746 12 1 6.4117 1.2727 -2.8990 13 16 2.3896 2.1282 1.4305 14 8 1.6477 1.4557 2.4388 15 8 2.2877 3.5253 1.1920 16 7 3.9868 1.8224 1.7431 17 6 5.0229 2.3673 0.8621 18 6 6.3826 2.2781 1.5580 19 1 6.3290 2.7754 2.5265 20 6 6.7593 0.8075 1.7575 21 6 8.1471 0.7269 2.3995 22 6 9.1585 1.4527 1.5095 23 7 8.7542 2.8553 1.3499 24 6 9.7737 3.6169 0.6161 25 6 11.0527 3.6940 1.4523 26 6 7.4452 2.9590 0.6923 27 1 -0.3633 0.4335 -0.9317 28 1 -0.3633 -1.0237 0.0905 29 1 -0.3634 0.5901 0.8413 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.3365 1.8765 -1.9206 33 1 2.2109 3.1738 -1.0717 34 1 3.4018 3.6268 -4.4813 35 1 4.2363 1.2794 2.5071 36 1 5.0506 1.7937 -0.0643 37 1 4.7975 3.4098 0.6374 38 1 6.0281 0.3294 2.4093 39 1 6.7745 0.3012 0.7924 40 1 8.4390 -0.3180 2.5051 41 1 8.1223 1.1988 3.3818 42 1 9.1934 0.9713 0.5322 43 1 10.1452 1.4094 1.9709 44 1 9.9876 3.1198 -0.3300 45 1 9.4051 4.6243 0.4222 46 1 11.8091 4.2595 0.9080 47 1 10.8388 4.1911 2.3985 48 1 11.4213 2.6868 1.6463 49 1 7.4881 2.4706 -0.2812 50 1 7.1875 4.0099 0.5604 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336954069.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:22 Heat of formation + Delta-G solvation = -113.998383 kcal Electronic energy + Delta-G solvation = -29092.922608 eV Core-core repulsion = 25280.114057 eV Total energy + Delta-G solvation = -3812.808551 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.31677 -38.30207 -37.67742 -36.99141 -36.86325 -34.67560 -34.39141 -32.04678 -31.50331 -30.65181 -28.49031 -26.62466 -25.04969 -24.92209 -23.52329 -23.24039 -21.76913 -20.71221 -20.26039 -18.67344 -18.55052 -18.26140 -17.37138 -16.99896 -16.71803 -16.18422 -15.94974 -15.64023 -15.42979 -15.20456 -14.92498 -14.77764 -14.60470 -14.36727 -14.05284 -13.78111 -13.64352 -13.58095 -13.37274 -13.28788 -13.12672 -13.01763 -12.98480 -12.72775 -12.70472 -12.59375 -12.42395 -12.25608 -12.16900 -12.00520 -11.95599 -11.71948 -11.59554 -11.51341 -11.24849 -11.14559 -10.56716 -10.32802 -9.76063 -9.30656 -8.14828 -6.26912 -0.25052 1.40764 1.42484 1.50950 2.03349 2.41806 2.64284 2.91031 3.17501 3.48016 3.76034 3.82229 3.94759 4.01006 4.13173 4.22993 4.29932 4.38946 4.45096 4.46766 4.52176 4.53948 4.61904 4.63931 4.71308 4.76647 4.82592 4.86084 4.91319 5.00946 5.03179 5.06374 5.10893 5.15277 5.18343 5.23941 5.30269 5.31374 5.38902 5.42860 5.53326 5.56489 5.80050 5.92563 6.09956 6.14049 6.17573 6.27642 6.84742 7.42110 8.93539 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010417 B = 0.004840 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2687.339509 B = 5783.935919 C = 7470.439763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.996 5.996 4 C 0.259 3.741 5 C -0.530 4.530 6 H 0.076 0.924 7 C 0.016 3.984 8 N -0.927 5.927 9 Si 0.948 3.052 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.258 1.258 13 S 2.800 3.200 14 O -1.005 7.005 15 O -1.020 7.020 16 N -1.110 6.110 17 C 0.124 3.876 18 C -0.079 4.079 19 H 0.088 0.912 20 C -0.117 4.117 21 C -0.110 4.110 22 C 0.049 3.951 23 N -0.540 5.540 24 C 0.043 3.957 25 C -0.140 4.140 26 C 0.060 3.940 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.022 0.978 43 H 0.091 0.909 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.023 0.977 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.136 -6.651 10.658 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.183 4.183 8 N -0.567 5.567 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.182 1.182 13 S 2.808 3.192 14 O -0.989 6.989 15 O -1.004 7.004 16 N -0.873 5.873 17 C -0.003 4.003 18 C -0.099 4.099 19 H 0.107 0.893 20 C -0.155 4.155 21 C -0.147 4.147 22 C -0.079 4.079 23 N -0.265 5.265 24 C -0.084 4.084 25 C -0.197 4.197 26 C -0.069 4.069 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.093 0.907 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.045 0.955 45 H 0.090 0.910 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.041 0.959 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.433 -5.693 11.354 17.089 hybrid contribution 0.714 -0.466 -1.853 2.039 sum 12.147 -6.159 9.501 16.606 Atomic orbital electron populations 1.22195 0.96097 1.03127 1.01252 1.21231 0.94464 0.81280 1.03312 1.57616 1.79482 1.24122 1.22436 1.18738 0.96403 0.91104 0.80211 1.21761 1.07022 1.20862 1.07284 0.90579 1.25703 0.99972 0.94841 0.97830 1.70064 1.39911 1.26599 1.20163 0.85703 0.80282 0.77645 0.78994 1.20261 1.21592 1.18171 1.01112 0.73208 0.72714 0.72202 1.93529 1.70554 1.76291 1.58513 1.93526 1.86809 1.33952 1.86097 1.55535 1.24025 1.68120 1.39638 1.21355 0.87306 0.98493 0.93136 1.21267 0.91462 0.97584 0.99575 0.89336 1.21664 0.97956 0.94676 1.01167 1.21562 0.93388 1.00639 0.99145 1.22247 0.99901 0.87207 0.98545 1.62004 1.01865 1.12311 1.50315 1.22164 0.92958 0.98156 0.95145 1.21742 0.95390 1.02306 1.00281 1.22001 0.89371 1.00629 0.94881 0.93371 0.89112 0.93667 0.90017 0.89588 0.96692 0.96175 0.92711 0.74268 0.90791 0.92801 0.90384 0.92815 0.89811 0.90710 0.95947 0.89045 0.95528 0.91023 0.91201 0.92051 0.92174 0.95875 0.90983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.11 10.24 71.98 0.74 -4.37 16 2 C 0.12 4.04 6.01 86.38 0.52 4.56 16 3 N -1.00 -40.06 2.84 -519.83 -1.48 -41.54 16 4 C 0.26 12.79 5.47 85.63 0.47 13.26 16 5 C -0.53 -26.34 7.94 25.60 0.20 -26.14 16 6 H 0.08 3.54 6.72 -2.91 -0.02 3.52 16 7 C 0.02 0.84 5.46 84.66 0.46 1.31 16 8 N -0.93 -52.81 13.29 21.45 0.28 -52.52 16 9 Si 0.95 40.80 29.54 68.60 2.03 42.83 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 12 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 13 S 2.80 109.26 6.11 -56.49 -0.34 108.92 16 14 O -1.00 -39.33 17.09 -128.00 -2.19 -41.52 16 15 O -1.02 -48.55 16.10 -128.00 -2.06 -50.61 16 16 N -1.11 -34.60 5.94 -187.48 -1.11 -35.72 16 17 C 0.12 4.10 5.55 86.38 0.48 4.58 16 18 C -0.08 -2.05 2.46 -10.74 -0.03 -2.08 16 19 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 20 C -0.12 -2.56 5.13 30.67 0.16 -2.40 16 21 C -0.11 -1.97 6.09 30.65 0.19 -1.78 16 22 C 0.05 0.96 5.29 86.33 0.46 1.41 16 23 N -0.54 -12.39 4.66 -896.35 -4.17 -16.56 16 24 C 0.04 0.89 5.68 86.30 0.49 1.38 16 25 C -0.14 -2.18 9.84 71.98 0.71 -1.47 16 26 C 0.06 1.64 4.74 86.33 0.41 2.04 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.04 1.45 8.10 -2.39 -0.02 1.43 16 30 H 0.08 2.68 8.06 -2.39 -0.02 2.66 16 31 H 0.09 2.41 7.64 -2.39 -0.02 2.40 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.02 1.13 6.83 -2.38 -0.02 1.12 16 34 H 0.26 14.31 8.31 -92.70 -0.77 13.54 16 35 H 0.42 10.31 7.44 -96.74 -0.72 9.59 16 36 H 0.07 2.72 5.55 -2.39 -0.01 2.71 16 37 H 0.05 2.04 7.73 -2.39 -0.02 2.03 16 38 H 0.08 1.49 6.97 -2.39 -0.02 1.47 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.09 1.49 6.21 -2.39 -0.01 1.48 16 44 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 45 H 0.07 1.50 7.99 -2.38 -0.02 1.48 16 46 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 49 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 2.03 8.02 -2.39 -0.02 2.01 16 Total: -1.00 -65.15 396.47 -3.61 -68.76 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.19 Total: 27.66 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.25 Total: -9.69 kcal Atomic # 7 Polarization: -139.86 SS G_CDS: -6.48 Total: -146.34 kcal Atomic # 8 Polarization: -87.88 SS G_CDS: -4.25 Total: -92.13 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Atomic # 16 Polarization: 109.26 SS G_CDS: -0.34 Total: 108.92 kcal Total: -65.15 -3.61 -68.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954069.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.241 kcal (2) G-P(sol) polarization free energy of solvation -65.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds