Wall clock time and date at job start Tue Mar 31 2020 17:25:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99748 * 274.33812 * 3 2 1 5 5 C 1.50700 * 109.47303 * 280.39979 * 4 3 2 6 6 H 1.07999 * 119.99792 * 3.89927 * 5 4 3 7 7 C 1.37880 * 119.99984 * 183.89621 * 5 4 3 8 8 N 1.31507 * 119.99676 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47210 * 120.00094 * 9 7 5 12 12 H 1.48510 * 109.46952 * 240.00156 * 9 7 5 13 13 S 1.65601 * 119.99953 * 94.33958 * 3 2 1 14 14 O 1.42095 * 106.40286 * 330.38085 * 13 3 2 15 15 O 1.42097 * 106.40312 * 197.46162 * 13 3 2 16 16 N 1.65596 * 107.21800 * 83.92442 * 13 3 2 17 17 C 1.46501 * 120.00616 * 64.69475 * 16 13 3 18 18 C 1.53000 * 109.47568 * 164.35643 * 17 16 13 19 19 H 1.09000 * 109.50199 * 54.92313 * 18 17 16 20 20 C 1.53196 * 109.52547 * 294.84169 * 18 17 16 21 21 C 1.53119 * 109.11656 * 182.40125 * 20 18 17 22 22 C 1.53030 * 109.31091 * 57.63573 * 21 20 18 23 23 N 1.46852 * 109.52641 * 300.80353 * 22 21 20 24 24 C 1.46898 * 111.00029 * 185.83553 * 23 22 21 25 25 C 1.53004 * 109.47152 * 66.04563 * 24 23 22 26 26 C 1.46846 * 111.19410 * 61.73997 * 23 22 21 27 27 H 1.09004 * 109.46643 * 65.08499 * 1 2 3 28 28 H 1.09001 * 109.47430 * 185.08755 * 1 2 3 29 29 H 1.09000 * 109.47088 * 305.08909 * 1 2 3 30 30 H 1.08996 * 109.47378 * 239.99675 * 2 1 3 31 31 H 1.09008 * 109.46634 * 119.99818 * 2 1 3 32 32 H 1.08999 * 109.47534 * 40.40505 * 4 3 2 33 33 H 1.09001 * 109.46734 * 160.40423 * 4 3 2 34 34 H 0.97007 * 119.99465 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99913 * 244.69291 * 16 13 3 36 36 H 1.08999 * 109.46895 * 44.35458 * 17 16 13 37 37 H 1.09004 * 109.46724 * 284.35998 * 17 16 13 38 38 H 1.09002 * 109.57605 * 62.49494 * 20 18 17 39 39 H 1.08995 * 109.51958 * 302.27693 * 20 18 17 40 40 H 1.09005 * 109.50531 * 297.67638 * 21 20 18 41 41 H 1.08996 * 109.50514 * 177.59869 * 21 20 18 42 42 H 1.09000 * 109.46290 * 60.81594 * 22 21 20 43 43 H 1.08995 * 109.46523 * 180.78732 * 22 21 20 44 44 H 1.08994 * 109.46838 * 186.04374 * 24 23 22 45 45 H 1.09000 * 109.47265 * 306.04936 * 24 23 22 46 46 H 1.09000 * 109.47065 * 59.99615 * 25 24 23 47 47 H 1.08993 * 109.47023 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46907 * 300.00182 * 25 24 23 49 49 H 1.08999 * 109.46737 * 58.27934 * 26 23 22 50 50 H 1.09003 * 109.45469 * 178.25626 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1720 2.1037 -1.2651 5 6 3.4553 1.6808 -1.9325 6 1 4.0611 0.9020 -1.4934 7 6 3.8558 2.2880 -3.1038 8 7 3.1183 3.2366 -3.6382 9 14 5.4461 1.7633 -3.9314 10 1 6.0864 0.6856 -3.1352 11 1 5.1510 1.2614 -5.2975 12 1 6.3656 2.9261 -4.0191 13 16 2.3967 2.1256 1.4300 14 8 1.5552 1.5475 2.4183 15 8 2.4328 3.5201 1.1592 16 7 3.9449 1.6844 1.8178 17 6 5.0601 2.0944 0.9607 18 6 6.3781 1.9110 1.7157 19 1 6.4553 0.8825 2.0684 20 6 6.4197 2.8663 2.9126 21 6 7.7664 2.7180 3.6260 22 6 8.8978 3.0035 2.6359 23 7 8.8143 2.0634 1.5108 24 6 9.9645 2.2170 0.6100 25 6 11.2429 1.7990 1.3394 26 6 7.5497 2.2199 0.7809 27 1 -0.3633 0.4330 -0.9321 28 1 -0.3634 -1.0236 0.0911 29 1 -0.3633 0.5907 0.8409 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 1.3301 1.8753 -1.9186 33 1 2.2001 3.1758 -1.0701 34 1 3.4003 3.6641 -4.4621 35 1 4.1136 1.1544 2.6125 36 1 4.9412 3.1426 0.6865 37 1 5.0695 1.4818 0.0590 38 1 5.6127 2.6218 3.6033 39 1 6.3034 3.8924 2.5637 40 1 7.8655 1.7022 4.0088 41 1 7.8198 3.4254 4.4534 42 1 8.8060 4.0239 2.2640 43 1 9.8581 2.8849 3.1376 44 1 9.8247 1.5868 -0.2682 45 1 10.0470 3.2588 0.3004 46 1 11.1604 0.7572 1.6492 47 1 12.0962 1.9125 0.6709 48 1 11.3825 2.4292 2.2178 49 1 7.4642 3.2441 0.4177 50 1 7.5308 1.5320 -0.0644 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:26 Heat of formation + Delta-G solvation = -92.721696 kcal Electronic energy + Delta-G solvation = -28981.831969 eV Core-core repulsion = 25169.946045 eV Total energy + Delta-G solvation = -3811.885924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.33154 -36.62991 -36.05580 -35.78194 -35.15763 -33.39816 -32.71893 -31.01796 -29.91386 -29.77038 -26.63445 -25.49414 -24.05860 -23.14655 -22.54128 -21.67095 -20.82430 -19.78345 -18.67044 -17.07995 -16.82106 -16.48728 -16.08720 -15.66942 -15.25717 -14.96739 -14.74004 -14.41707 -14.20325 -14.04782 -13.72417 -13.43236 -13.25909 -13.01687 -12.86758 -12.44881 -12.23383 -12.07328 -12.05384 -11.93070 -11.81053 -11.67680 -11.43556 -11.29880 -11.25726 -11.12728 -11.09112 -11.01986 -10.94354 -10.57518 -10.52291 -10.38159 -10.30364 -10.21215 -10.00355 -9.78149 -8.90655 -8.52214 -8.36039 -8.04108 -6.13111 -4.19326 1.34716 3.20307 3.29284 3.30370 3.55660 3.84476 4.21043 4.32912 4.74222 4.76474 4.90377 5.02197 5.06549 5.14643 5.20720 5.27728 5.33824 5.35588 5.41258 5.44106 5.60043 5.63627 5.74680 5.76187 5.78924 5.83112 5.85554 5.86928 5.89265 6.02434 6.06135 6.06391 6.14228 6.21133 6.27412 6.36266 6.46621 6.60027 6.69815 6.74561 7.05272 7.06795 7.32115 7.40123 7.47785 7.70540 7.84799 8.15067 8.85379 9.46093 10.94915 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004880 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.468553 B = 5736.697064 C = 7791.071995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.786 3.214 14 O -1.002 7.002 15 O -0.980 6.980 16 N -1.129 6.129 17 C 0.124 3.876 18 C -0.087 4.087 19 H 0.082 0.918 20 C -0.118 4.118 21 C -0.116 4.116 22 C 0.052 3.948 23 N -0.538 5.538 24 C 0.048 3.952 25 C -0.147 4.147 26 C 0.059 3.941 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.053 0.947 49 H 0.040 0.960 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.936 -4.093 10.630 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.006 3.994 3 N -0.834 5.834 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.715 3.285 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.794 3.206 14 O -0.986 6.986 15 O -0.963 6.963 16 N -0.887 5.887 17 C -0.003 4.003 18 C -0.107 4.107 19 H 0.100 0.900 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.076 4.076 23 N -0.263 5.263 24 C -0.079 4.079 25 C -0.205 4.205 26 C -0.069 4.069 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.050 0.950 43 H 0.092 0.908 44 H 0.093 0.907 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.072 0.928 49 H 0.058 0.942 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.338 -3.719 10.973 14.881 hybrid contribution 1.207 0.111 -0.940 1.534 sum 10.545 -3.608 10.032 14.996 Atomic orbital electron populations 1.22212 0.97009 1.01275 1.02425 1.20937 0.93576 0.82913 1.01983 1.57713 1.78764 1.22966 1.23913 1.19212 0.97141 0.92650 0.78931 1.21567 1.07088 1.20782 1.08166 0.91713 1.24943 0.97034 0.94791 0.97035 1.69944 1.37925 1.24567 1.20102 0.86613 0.83634 0.78570 0.79663 1.19497 1.20974 1.20908 1.01710 0.72614 0.73723 0.72597 1.93545 1.65283 1.79769 1.60039 1.93573 1.86574 1.31058 1.85127 1.55946 1.25059 1.70872 1.36859 1.21380 0.84193 1.01741 0.92975 1.21369 0.93348 1.00570 0.95415 0.89958 1.21683 0.96924 0.99812 0.97194 1.21583 0.94339 1.02134 0.97295 1.22145 0.99225 0.93604 0.92624 1.61943 1.01994 1.52121 1.10253 1.22067 0.90609 0.99570 0.95699 1.21797 0.96196 1.02187 1.00299 1.22071 0.88154 1.00624 0.96042 0.92206 0.92492 0.92488 0.90147 0.92239 0.94849 0.92674 0.92662 0.76249 0.90372 0.89601 0.91532 0.91851 0.91248 0.91771 0.95019 0.90825 0.90651 0.94972 0.91893 0.92481 0.92809 0.94216 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.27 6.01 -4.04 -0.02 2.25 16 3 N -0.99 -19.97 2.84 -115.67 -0.33 -20.30 16 4 C 0.24 5.86 5.46 -5.20 -0.03 5.83 16 5 C -0.54 -13.35 8.51 -34.44 -0.29 -13.65 16 6 H 0.06 1.54 6.46 -52.49 -0.34 1.20 16 7 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.80 13.29 55.43 0.74 -24.07 16 9 Si 0.89 19.90 29.54 -169.99 -5.02 14.88 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 13 S 2.79 54.35 6.07 -107.50 -0.65 53.70 16 14 O -1.00 -20.26 17.10 -57.18 -0.98 -21.24 16 15 O -0.98 -22.69 16.02 -57.18 -0.92 -23.61 16 16 N -1.13 -17.74 5.62 -10.61 -0.06 -17.80 16 17 C 0.12 2.00 5.58 -4.04 -0.02 1.98 16 18 C -0.09 -1.14 2.38 -90.50 -0.22 -1.36 16 19 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.12 -1.44 5.15 -26.57 -0.14 -1.57 16 21 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 22 C 0.05 0.55 5.29 -3.83 -0.02 0.53 16 23 N -0.54 -6.41 4.66 -234.68 -1.09 -7.50 16 24 C 0.05 0.52 5.68 -3.82 -0.02 0.50 16 25 C -0.15 -1.29 9.85 37.16 0.37 -0.92 16 26 C 0.06 0.80 4.74 -3.84 -0.02 0.78 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.95 7.90 -51.93 -0.41 0.54 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.90 7.80 -51.92 -0.40 0.49 16 32 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.49 6.77 -51.93 -0.35 1.14 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 35 H 0.41 5.24 8.43 -34.47 -0.29 4.95 16 36 H 0.08 1.42 7.75 -51.93 -0.40 1.02 16 37 H 0.09 1.52 5.91 -51.93 -0.31 1.21 16 38 H 0.07 0.78 7.65 -51.93 -0.40 0.38 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.69 6.22 -51.93 -0.32 0.37 16 44 H 0.07 0.82 7.98 -51.93 -0.41 0.41 16 45 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.45 6.44 -51.93 -0.33 0.11 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.08 1.12 8.01 -51.93 -0.42 0.71 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -30.35 398.27 -11.62 -41.97 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -9.02 Total: 5.66 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -0.29 Total: -7.70 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -0.74 Total: -69.66 kcal Atomic # 8 Polarization: -42.95 SS G_CDS: -1.89 Total: -44.84 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 54.35 SS G_CDS: -0.65 Total: 53.70 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.35 -11.62 -41.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.756 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds