Wall clock time and date at job start Tue Mar 31 2020 17:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47279 * 2 1 4 4 C 1.46497 * 119.99748 * 274.33812 * 3 2 1 5 5 C 1.50700 * 109.47303 * 280.39979 * 4 3 2 6 6 H 1.07999 * 119.99792 * 3.89927 * 5 4 3 7 7 C 1.37880 * 119.99984 * 183.89621 * 5 4 3 8 8 N 1.31507 * 119.99676 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99769 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47422 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47210 * 120.00094 * 9 7 5 12 12 H 1.48510 * 109.46952 * 240.00156 * 9 7 5 13 13 S 1.65601 * 119.99953 * 94.33958 * 3 2 1 14 14 O 1.42095 * 106.40286 * 330.38085 * 13 3 2 15 15 O 1.42097 * 106.40312 * 197.46162 * 13 3 2 16 16 N 1.65596 * 107.21800 * 83.92442 * 13 3 2 17 17 C 1.46501 * 120.00616 * 64.69475 * 16 13 3 18 18 C 1.53000 * 109.47568 * 164.35643 * 17 16 13 19 19 H 1.09000 * 109.50199 * 54.92313 * 18 17 16 20 20 C 1.53196 * 109.52547 * 294.84169 * 18 17 16 21 21 C 1.53119 * 109.11656 * 182.40125 * 20 18 17 22 22 C 1.53030 * 109.31091 * 57.63573 * 21 20 18 23 23 N 1.46852 * 109.52641 * 300.80353 * 22 21 20 24 24 C 1.46898 * 111.00029 * 185.83553 * 23 22 21 25 25 C 1.53004 * 109.47152 * 66.04563 * 24 23 22 26 26 C 1.46846 * 111.19410 * 61.73997 * 23 22 21 27 27 H 1.09004 * 109.46643 * 65.08499 * 1 2 3 28 28 H 1.09001 * 109.47430 * 185.08755 * 1 2 3 29 29 H 1.09000 * 109.47088 * 305.08909 * 1 2 3 30 30 H 1.08996 * 109.47378 * 239.99675 * 2 1 3 31 31 H 1.09008 * 109.46634 * 119.99818 * 2 1 3 32 32 H 1.08999 * 109.47534 * 40.40505 * 4 3 2 33 33 H 1.09001 * 109.46734 * 160.40423 * 4 3 2 34 34 H 0.97007 * 119.99465 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99913 * 244.69291 * 16 13 3 36 36 H 1.08999 * 109.46895 * 44.35458 * 17 16 13 37 37 H 1.09004 * 109.46724 * 284.35998 * 17 16 13 38 38 H 1.09002 * 109.57605 * 62.49494 * 20 18 17 39 39 H 1.08995 * 109.51958 * 302.27693 * 20 18 17 40 40 H 1.09005 * 109.50531 * 297.67638 * 21 20 18 41 41 H 1.08996 * 109.50514 * 177.59869 * 21 20 18 42 42 H 1.09000 * 109.46290 * 60.81594 * 22 21 20 43 43 H 1.08995 * 109.46523 * 180.78732 * 22 21 20 44 44 H 1.08994 * 109.46838 * 186.04374 * 24 23 22 45 45 H 1.09000 * 109.47265 * 306.04936 * 24 23 22 46 46 H 1.09000 * 109.47065 * 59.99615 * 25 24 23 47 47 H 1.08993 * 109.47023 * 179.97438 * 25 24 23 48 48 H 1.09004 * 109.46907 * 300.00182 * 25 24 23 49 49 H 1.08999 * 109.46737 * 58.27934 * 26 23 22 50 50 H 1.09003 * 109.45469 * 178.25626 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1720 2.1037 -1.2651 5 6 3.4553 1.6808 -1.9325 6 1 4.0611 0.9020 -1.4934 7 6 3.8558 2.2880 -3.1038 8 7 3.1183 3.2366 -3.6382 9 14 5.4461 1.7633 -3.9314 10 1 6.0864 0.6856 -3.1352 11 1 5.1510 1.2614 -5.2975 12 1 6.3656 2.9261 -4.0191 13 16 2.3967 2.1256 1.4300 14 8 1.5552 1.5475 2.4183 15 8 2.4328 3.5201 1.1592 16 7 3.9449 1.6844 1.8178 17 6 5.0601 2.0944 0.9607 18 6 6.3781 1.9110 1.7157 19 1 6.4553 0.8825 2.0684 20 6 6.4197 2.8663 2.9126 21 6 7.7664 2.7180 3.6260 22 6 8.8978 3.0035 2.6359 23 7 8.8143 2.0634 1.5108 24 6 9.9645 2.2170 0.6100 25 6 11.2429 1.7990 1.3394 26 6 7.5497 2.2199 0.7809 27 1 -0.3633 0.4330 -0.9321 28 1 -0.3634 -1.0236 0.0911 29 1 -0.3633 0.5907 0.8409 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8901 32 1 1.3301 1.8753 -1.9186 33 1 2.2001 3.1758 -1.0701 34 1 3.4003 3.6641 -4.4621 35 1 4.1136 1.1544 2.6125 36 1 4.9412 3.1426 0.6865 37 1 5.0695 1.4818 0.0590 38 1 5.6127 2.6218 3.6033 39 1 6.3034 3.8924 2.5637 40 1 7.8655 1.7022 4.0088 41 1 7.8198 3.4254 4.4534 42 1 8.8060 4.0239 2.2640 43 1 9.8581 2.8849 3.1376 44 1 9.8247 1.5868 -0.2682 45 1 10.0470 3.2588 0.3004 46 1 11.1604 0.7572 1.6492 47 1 12.0962 1.9125 0.6709 48 1 11.3825 2.4292 2.2178 49 1 7.4642 3.2441 0.4177 50 1 7.5308 1.5320 -0.0644 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336954071.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:25 Heat of formation + Delta-G solvation = -114.228540 kcal Electronic energy + Delta-G solvation = -28982.764576 eV Core-core repulsion = 25169.946045 eV Total energy + Delta-G solvation = -3812.818531 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.31148 -38.29608 -37.66956 -36.98428 -36.86231 -34.66198 -34.41862 -32.04464 -31.49607 -30.65612 -28.48179 -26.61399 -25.06882 -24.90180 -23.51105 -23.22259 -21.79198 -20.85593 -20.16782 -18.65967 -18.54872 -18.23023 -17.37526 -17.00015 -16.58220 -16.24643 -15.93357 -15.76215 -15.33263 -15.24514 -15.02124 -14.74249 -14.61236 -14.33577 -13.99051 -13.77041 -13.64485 -13.61583 -13.38623 -13.27017 -13.13084 -13.00493 -12.99186 -12.73463 -12.65004 -12.60504 -12.44182 -12.26104 -12.09547 -12.02366 -11.95307 -11.68535 -11.57137 -11.54093 -11.27533 -11.18490 -10.56675 -10.31390 -9.75842 -9.30416 -8.13977 -6.26520 -0.25505 1.42163 1.44823 1.55092 2.03063 2.43733 2.64051 2.91046 3.18734 3.49527 3.74925 3.83482 3.91110 4.00656 4.14369 4.22282 4.30329 4.37841 4.44880 4.48134 4.51940 4.58401 4.62513 4.64318 4.67072 4.74001 4.77884 4.86601 4.91552 5.01065 5.02884 5.06791 5.11448 5.15281 5.18540 5.22138 5.29911 5.32262 5.39166 5.43925 5.51199 5.56452 5.81117 5.93679 6.10323 6.14869 6.17605 6.27549 6.85991 7.43088 8.94712 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010050 B = 0.004880 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2785.468553 B = 5736.697064 C = 7791.071995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.996 5.996 4 C 0.258 3.742 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.950 3.050 10 H -0.251 1.251 11 H -0.285 1.285 12 H -0.285 1.285 13 S 2.799 3.201 14 O -1.006 7.006 15 O -1.020 7.020 16 N -1.110 6.110 17 C 0.128 3.872 18 C -0.076 4.076 19 H 0.097 0.903 20 C -0.120 4.120 21 C -0.109 4.109 22 C 0.049 3.951 23 N -0.539 5.539 24 C 0.043 3.957 25 C -0.140 4.140 26 C 0.060 3.940 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.051 0.949 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.047 0.953 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.023 0.977 43 H 0.092 0.908 44 H 0.071 0.929 45 H 0.028 0.972 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.059 0.941 49 H 0.023 0.977 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.930 -6.157 12.129 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.837 5.837 4 C 0.135 3.865 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.775 3.225 10 H -0.174 1.174 11 H -0.211 1.211 12 H -0.211 1.211 13 S 2.807 3.193 14 O -0.990 6.990 15 O -1.003 7.003 16 N -0.873 5.873 17 C 0.001 3.999 18 C -0.097 4.097 19 H 0.115 0.885 20 C -0.158 4.158 21 C -0.147 4.147 22 C -0.078 4.078 23 N -0.264 5.264 24 C -0.084 4.084 25 C -0.197 4.197 26 C -0.069 4.069 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.064 0.936 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.033 0.967 33 H 0.038 0.962 34 H 0.072 0.928 35 H 0.258 0.742 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.041 0.959 43 H 0.110 0.890 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.078 0.922 49 H 0.042 0.958 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 11.327 -5.821 12.511 17.853 hybrid contribution 0.551 0.746 -1.357 1.644 sum 11.877 -5.075 11.154 17.066 Atomic orbital electron populations 1.22200 0.96103 1.03122 1.01291 1.21237 0.94474 0.81228 1.03342 1.57613 1.79466 1.24154 1.22454 1.18744 0.96479 0.91126 0.80200 1.21842 1.07037 1.20387 1.07780 0.90357 1.25766 1.00193 0.94826 0.97919 1.70084 1.39991 1.26187 1.20738 0.85626 0.79771 0.78544 0.78578 1.17395 1.21075 1.21094 1.01127 0.73170 0.72787 0.72189 1.93531 1.66010 1.79552 1.59875 1.93527 1.87326 1.33859 1.85633 1.55509 1.23546 1.70817 1.37387 1.21295 0.85730 0.99750 0.93137 1.21283 0.91317 1.01691 0.95386 0.88471 1.21702 0.98603 0.98574 0.96930 1.21558 0.92691 1.03094 0.97344 1.22237 1.00367 0.92876 0.92340 1.61996 1.01479 1.52431 1.10481 1.22163 0.91124 0.99320 0.95814 1.21743 0.95376 1.02073 1.00549 1.22007 0.89301 0.99483 0.96132 0.93434 0.89120 0.93563 0.89987 0.89584 0.96675 0.96223 0.92775 0.74159 0.93071 0.90926 0.90925 0.93394 0.90461 0.90109 0.95894 0.89002 0.91081 0.95417 0.92025 0.91252 0.92180 0.95834 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.13 10.24 71.98 0.74 -4.40 16 2 C 0.12 4.03 6.01 86.38 0.52 4.55 16 3 N -1.00 -40.23 2.84 -519.85 -1.48 -41.70 16 4 C 0.26 12.87 5.46 85.63 0.47 13.34 16 5 C -0.53 -26.67 8.51 25.60 0.22 -26.45 16 6 H 0.08 3.65 6.46 -2.91 -0.02 3.63 16 7 C 0.01 0.64 5.46 84.66 0.46 1.11 16 8 N -0.93 -53.54 13.29 21.45 0.28 -53.25 16 9 Si 0.95 40.87 29.54 68.60 2.03 42.89 16 10 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 11 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 13 S 2.80 109.18 6.07 -56.49 -0.34 108.84 16 14 O -1.01 -39.52 17.10 -128.00 -2.19 -41.71 16 15 O -1.02 -48.77 16.02 -128.00 -2.05 -50.82 16 16 N -1.11 -33.80 5.62 -187.48 -1.05 -34.85 16 17 C 0.13 4.10 5.58 86.38 0.48 4.58 16 18 C -0.08 -1.92 2.38 -10.72 -0.03 -1.95 16 19 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 20 C -0.12 -2.75 5.15 30.70 0.16 -2.59 16 21 C -0.11 -1.97 6.09 30.64 0.19 -1.79 16 22 C 0.05 0.95 5.29 86.32 0.46 1.41 16 23 N -0.54 -11.89 4.66 -896.38 -4.17 -16.07 16 24 C 0.04 0.86 5.68 86.30 0.49 1.35 16 25 C -0.14 -2.11 9.85 71.98 0.71 -1.40 16 26 C 0.06 1.56 4.74 86.33 0.41 1.97 16 27 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.05 1.50 7.90 -2.39 -0.02 1.48 16 30 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 31 H 0.09 2.37 7.80 -2.38 -0.02 2.36 16 32 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.02 1.12 6.77 -2.39 -0.02 1.11 16 34 H 0.26 14.39 8.31 -92.70 -0.77 13.62 16 35 H 0.42 9.98 8.43 -96.74 -0.82 9.16 16 36 H 0.05 1.93 7.75 -2.39 -0.02 1.91 16 37 H 0.07 2.54 5.91 -2.39 -0.01 2.52 16 38 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.02 0.48 8.14 -2.39 -0.02 0.47 16 43 H 0.09 1.45 6.22 -2.39 -0.01 1.44 16 44 H 0.07 1.46 7.98 -2.39 -0.02 1.44 16 45 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 46 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 0.83 6.44 -2.39 -0.02 0.81 16 49 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.07 2.00 8.01 -2.39 -0.02 1.98 16 Total: -1.00 -66.17 398.27 -3.61 -69.79 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.09 Total: 27.15 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 5.27 Total: -10.26 kcal Atomic # 7 Polarization: -139.45 SS G_CDS: -6.42 Total: -145.87 kcal Atomic # 8 Polarization: -88.29 SS G_CDS: -4.24 Total: -92.53 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 16 Polarization: 109.18 SS G_CDS: -0.34 Total: 108.84 kcal Total: -66.17 -3.61 -69.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954071.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.443 kcal (2) G-P(sol) polarization free energy of solvation -66.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds