Wall clock time and date at job start Tue Mar 31 2020 17:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46627 * 2 1 4 4 C 1.46500 * 120.00189 * 274.99992 * 3 2 1 5 5 C 1.50707 * 109.47016 * 275.00196 * 4 3 2 6 6 H 1.08001 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47107 * 60.00022 * 9 7 5 11 11 H 1.48506 * 109.47148 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47219 * 300.00035 * 9 7 5 13 13 S 1.65600 * 119.99758 * 95.00444 * 3 2 1 14 14 O 1.42099 * 106.40561 * 336.45300 * 13 3 2 15 15 O 1.42104 * 106.39731 * 203.53485 * 13 3 2 16 16 N 1.65604 * 107.21946 * 89.99739 * 13 3 2 17 17 C 1.47073 * 120.87940 * 262.48064 * 16 13 3 18 18 C 1.53235 * 108.52275 * 231.16292 * 17 16 13 19 19 H 1.09004 * 109.49542 * 66.13409 * 18 17 16 20 20 C 1.52998 * 109.51725 * 186.19814 * 18 17 16 21 21 N 1.46895 * 109.34228 * 306.17149 * 18 17 16 22 22 C 1.46898 * 111.00194 * 187.25349 * 21 18 17 23 23 C 1.53007 * 109.47207 * 170.04607 * 22 21 18 24 24 C 1.46905 * 111.26736 * 63.10342 * 21 18 17 25 25 C 1.47080 * 120.87894 * 82.46043 * 16 13 3 26 26 H 1.09002 * 109.62560 * 248.53991 * 25 16 13 27 27 C 1.52995 * 109.63106 * 9.12862 * 25 16 13 28 28 H 1.08996 * 109.46886 * 299.99638 * 1 2 3 29 29 H 1.08996 * 109.47325 * 60.00239 * 1 2 3 30 30 H 1.09002 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46886 * 240.00362 * 2 1 3 32 32 H 1.08989 * 109.47021 * 120.00059 * 2 1 3 33 33 H 1.08997 * 109.47366 * 35.00053 * 4 3 2 34 34 H 1.08997 * 109.47166 * 155.00307 * 4 3 2 35 35 H 0.97008 * 120.00196 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.63029 * 111.45389 * 17 16 13 37 37 H 1.09001 * 109.62788 * 350.87583 * 17 16 13 38 38 H 1.08996 * 109.47532 * 185.97182 * 20 18 17 39 39 H 1.09001 * 109.47482 * 305.97183 * 20 18 17 40 40 H 1.09000 * 109.47215 * 65.96657 * 20 18 17 41 41 H 1.09000 * 109.47103 * 290.04658 * 22 21 18 42 42 H 1.09000 * 109.47445 * 50.04517 * 22 21 18 43 43 H 1.09000 * 109.47131 * 300.00034 * 23 22 21 44 44 H 1.09000 * 109.46992 * 59.99632 * 23 22 21 45 45 H 1.08997 * 109.47094 * 180.02562 * 23 22 21 46 46 H 1.08997 * 109.49031 * 176.93701 * 24 21 18 47 47 H 1.08999 * 109.51499 * 56.87104 * 24 21 18 48 48 H 1.09008 * 109.46864 * 186.28504 * 27 25 16 49 49 H 1.09002 * 109.47105 * 306.27875 * 27 25 16 50 50 H 1.08992 * 109.47451 * 66.28511 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3840 7 6 3.8525 2.3607 -3.0848 8 7 3.0275 3.1856 -3.6919 9 14 5.5089 1.9638 -3.8517 10 1 5.5986 0.5038 -4.1080 11 1 5.6502 2.7004 -5.1335 12 1 6.5944 2.3711 -2.9238 13 16 2.4122 2.1202 1.4287 14 8 1.6869 1.4415 2.4449 15 8 2.3056 3.5186 1.1998 16 7 4.0145 1.8137 1.7137 17 6 4.4266 0.7207 2.6073 18 6 5.4171 1.2790 3.6345 19 1 4.9063 1.9912 4.2827 20 6 5.9789 0.1329 4.4782 21 7 6.5161 1.9555 2.9329 22 6 7.5733 2.3547 3.8715 23 6 8.7998 2.8265 3.0877 24 6 6.0285 3.1104 2.1671 25 6 5.0630 2.6272 1.0796 26 1 5.6045 2.0234 0.3513 27 6 4.4279 3.8325 0.3835 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0755 35 1 3.2793 3.5882 -4.5378 36 1 4.9068 -0.0663 2.0258 37 1 3.5534 0.3190 3.1213 38 1 6.6005 0.5396 5.2758 39 1 5.1566 -0.4356 4.9125 40 1 6.5799 -0.5220 3.8473 41 1 7.2113 3.1662 4.5028 42 1 7.8461 1.5033 4.4950 43 1 9.1618 2.0151 2.4563 44 1 8.5269 3.6779 2.4641 45 1 9.5843 3.1223 3.7841 46 1 6.8720 3.6218 1.7034 47 1 5.5093 3.7975 2.8353 48 1 5.1911 4.3714 -0.1781 49 1 3.6493 3.4899 -0.2981 50 1 3.9911 4.4950 1.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336954283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:41 Heat of formation + Delta-G solvation = -53.769312 kcal Electronic energy + Delta-G solvation = -30416.616067 eV Core-core repulsion = 26606.419245 eV Total energy + Delta-G solvation = -3810.196822 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.36103 -36.96961 -36.08937 -35.36679 -35.06881 -33.20513 -32.71381 -30.51523 -29.97384 -28.88056 -26.62086 -25.79122 -24.81357 -23.12012 -22.01500 -21.66060 -21.41608 -19.93044 -18.11402 -17.00741 -16.77937 -16.33519 -15.89801 -15.77491 -15.14813 -15.00314 -14.50187 -14.35755 -14.25994 -13.85160 -13.56272 -13.17966 -12.90643 -12.81862 -12.59145 -12.34528 -12.21145 -12.01016 -11.96882 -11.85880 -11.81213 -11.70635 -11.55462 -11.35753 -11.18853 -11.10337 -10.97690 -10.94982 -10.79037 -10.65224 -10.52403 -10.41500 -10.11975 -9.91272 -9.75431 -9.54631 -8.71727 -8.48521 -8.17139 -8.01495 -6.10713 -4.16517 1.30531 3.27310 3.32903 3.34509 3.48397 3.88010 4.13681 4.37512 4.78842 4.85547 4.93289 5.09154 5.16447 5.23307 5.25409 5.36705 5.43657 5.44556 5.49160 5.53124 5.67153 5.68794 5.71277 5.78007 5.80950 5.83410 5.91923 5.98151 6.02197 6.10346 6.13967 6.19192 6.23732 6.31986 6.38205 6.60594 6.66316 6.69451 6.88268 7.05862 7.12240 7.17614 7.28149 7.44080 7.53560 7.66376 7.87050 8.14703 8.87996 9.49052 10.96813 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.006194 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.361080 B = 4519.744798 C = 6155.273455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.273 1.273 13 S 2.782 3.218 14 O -1.003 7.003 15 O -0.975 6.975 16 N -1.003 6.003 17 C 0.129 3.871 18 C 0.071 3.929 19 H 0.042 0.958 20 C -0.147 4.147 21 N -0.531 5.531 22 C 0.046 3.954 23 C -0.149 4.149 24 C 0.046 3.954 25 C 0.170 3.830 26 H 0.082 0.918 27 C -0.188 4.188 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.053 0.947 35 H 0.265 0.735 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.035 0.965 48 H 0.057 0.943 49 H 0.113 0.887 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.051 -4.462 12.890 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.574 4.574 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.527 5.527 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.199 1.199 13 S 2.793 3.207 14 O -0.988 6.988 15 O -0.959 6.959 16 N -0.842 5.842 17 C 0.003 3.997 18 C -0.039 4.039 19 H 0.060 0.940 20 C -0.205 4.205 21 N -0.257 5.257 22 C -0.082 4.082 23 C -0.207 4.207 24 C -0.083 4.083 25 C 0.064 3.936 26 H 0.101 0.899 27 C -0.246 4.246 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.053 0.947 48 H 0.076 0.924 49 H 0.131 0.869 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.610 -4.161 12.923 14.690 hybrid contribution 0.962 0.151 -0.302 1.020 sum 6.572 -4.009 12.621 14.784 Atomic orbital electron populations 1.22208 0.96999 1.01350 1.02330 1.20943 0.93550 0.82994 1.02019 1.57776 1.78467 1.22896 1.24199 1.19263 0.97402 0.92152 0.79148 1.21474 1.02035 1.27996 1.05934 0.91875 1.24905 0.97041 0.94843 0.96798 1.69923 1.35926 1.29766 1.17102 0.86693 0.84446 0.78468 0.78665 1.20323 1.21343 1.19880 1.01919 0.72360 0.73754 0.72682 1.93490 1.70564 1.76706 1.58009 1.93674 1.86089 1.30466 1.85669 1.58306 1.24473 1.43059 1.58321 1.21468 0.97929 0.89373 0.90947 1.21927 0.91730 0.95996 0.94255 0.93984 1.21889 1.01323 0.97978 0.99274 1.61964 1.10692 1.27080 1.25952 1.22158 0.92371 0.99319 0.94358 1.21810 0.96761 1.01724 1.00391 1.22649 0.98325 0.91347 0.96011 1.20975 0.87607 0.92231 0.92824 0.89949 1.22898 1.02519 0.96880 1.02310 0.92738 0.92082 0.92374 0.90237 0.92121 0.94446 0.92972 0.92566 0.90980 0.89033 0.92433 0.91816 0.91349 0.95372 0.90339 0.91802 0.92528 0.92648 0.89644 0.94676 0.92427 0.86863 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.30 6.06 -4.04 -0.02 2.28 16 3 N -0.99 -20.30 2.82 -115.66 -0.33 -20.63 16 4 C 0.24 5.80 4.72 -5.19 -0.02 5.78 16 5 C -0.54 -13.33 7.81 -34.44 -0.27 -13.60 16 6 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 7 C 0.07 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -24.56 13.29 55.43 0.74 -23.82 16 9 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 S 2.78 55.99 5.72 -107.50 -0.61 55.37 16 14 O -1.00 -20.62 15.56 -57.17 -0.89 -21.51 16 15 O -0.97 -22.01 12.06 -57.17 -0.69 -22.70 16 16 N -1.00 -17.65 3.39 -106.21 -0.36 -18.01 16 17 C 0.13 1.90 5.97 -3.61 -0.02 1.88 16 18 C 0.07 0.92 2.60 -67.59 -0.18 0.75 16 19 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 20 C -0.15 -1.45 8.52 37.16 0.32 -1.13 16 21 N -0.53 -7.07 4.48 -226.35 -1.01 -8.08 16 22 C 0.05 0.49 5.37 -3.82 -0.02 0.47 16 23 C -0.15 -1.49 9.84 37.16 0.37 -1.12 16 24 C 0.05 0.68 4.75 -3.70 -0.02 0.67 16 25 C 0.17 3.00 3.67 -67.49 -0.25 2.76 16 26 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 27 C -0.19 -3.75 7.40 37.16 0.27 -3.47 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 32 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 33 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 34 H 0.05 1.37 5.84 -51.93 -0.30 1.07 16 35 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.31 6.79 -51.93 -0.35 0.96 16 38 H 0.06 0.50 6.49 -51.93 -0.34 0.16 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 42 H 0.08 0.75 5.77 -51.93 -0.30 0.45 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 45 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 46 H 0.09 1.17 6.16 -51.93 -0.32 0.85 16 47 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 48 H 0.06 1.08 8.14 -51.92 -0.42 0.65 16 49 H 0.11 2.60 2.19 -51.93 -0.11 2.49 16 50 H 0.07 1.50 6.55 -51.93 -0.34 1.16 16 LS Contribution 382.55 15.07 5.76 5.76 Total: -1.00 -29.09 382.55 -10.65 -39.74 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -8.68 Total: 4.03 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: 0.44 Total: -5.42 kcal Atomic # 7 Polarization: -69.57 SS G_CDS: -0.96 Total: -70.54 kcal Atomic # 8 Polarization: -42.63 SS G_CDS: -1.58 Total: -44.21 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 55.99 SS G_CDS: -0.61 Total: 55.37 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.09 -10.65 -39.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.029 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds