Wall clock time and date at job start Tue Mar 31 2020 17:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46498 * 109.46627 * 2 1 4 4 C 1.46500 * 120.00189 * 274.99992 * 3 2 1 5 5 C 1.50707 * 109.47016 * 275.00196 * 4 3 2 6 6 H 1.08001 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.37872 * 119.99928 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00050 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47107 * 60.00022 * 9 7 5 11 11 H 1.48506 * 109.47148 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47219 * 300.00035 * 9 7 5 13 13 S 1.65600 * 119.99758 * 95.00444 * 3 2 1 14 14 O 1.42099 * 106.40561 * 336.45300 * 13 3 2 15 15 O 1.42104 * 106.39731 * 203.53485 * 13 3 2 16 16 N 1.65604 * 107.21946 * 89.99739 * 13 3 2 17 17 C 1.47073 * 120.87940 * 262.48064 * 16 13 3 18 18 C 1.53235 * 108.52275 * 231.16292 * 17 16 13 19 19 H 1.09004 * 109.49542 * 66.13409 * 18 17 16 20 20 C 1.52998 * 109.51725 * 186.19814 * 18 17 16 21 21 N 1.46895 * 109.34228 * 306.17149 * 18 17 16 22 22 C 1.46898 * 111.00194 * 187.25349 * 21 18 17 23 23 C 1.53007 * 109.47207 * 170.04607 * 22 21 18 24 24 C 1.46905 * 111.26736 * 63.10342 * 21 18 17 25 25 C 1.47080 * 120.87894 * 82.46043 * 16 13 3 26 26 H 1.09002 * 109.62560 * 248.53991 * 25 16 13 27 27 C 1.52995 * 109.63106 * 9.12862 * 25 16 13 28 28 H 1.08996 * 109.46886 * 299.99638 * 1 2 3 29 29 H 1.08996 * 109.47325 * 60.00239 * 1 2 3 30 30 H 1.09002 * 109.46741 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46886 * 240.00362 * 2 1 3 32 32 H 1.08989 * 109.47021 * 120.00059 * 2 1 3 33 33 H 1.08997 * 109.47366 * 35.00053 * 4 3 2 34 34 H 1.08997 * 109.47166 * 155.00307 * 4 3 2 35 35 H 0.97008 * 120.00196 * 179.97438 * 8 7 5 36 36 H 1.08999 * 109.63029 * 111.45389 * 17 16 13 37 37 H 1.09001 * 109.62788 * 350.87583 * 17 16 13 38 38 H 1.08996 * 109.47532 * 185.97182 * 20 18 17 39 39 H 1.09001 * 109.47482 * 305.97183 * 20 18 17 40 40 H 1.09000 * 109.47215 * 65.96657 * 20 18 17 41 41 H 1.09000 * 109.47103 * 290.04658 * 22 21 18 42 42 H 1.09000 * 109.47445 * 50.04517 * 22 21 18 43 43 H 1.09000 * 109.47131 * 300.00034 * 23 22 21 44 44 H 1.09000 * 109.46992 * 59.99632 * 23 22 21 45 45 H 1.08997 * 109.47094 * 180.02562 * 23 22 21 46 46 H 1.08997 * 109.49031 * 176.93701 * 24 21 18 47 47 H 1.08999 * 109.51499 * 56.87104 * 24 21 18 48 48 H 1.09008 * 109.46864 * 186.28504 * 27 25 16 49 49 H 1.09002 * 109.47105 * 306.27875 * 27 25 16 50 50 H 1.08992 * 109.47451 * 66.28511 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4948 1.7889 -1.8823 6 1 4.1721 1.1112 -1.3840 7 6 3.8525 2.3607 -3.0848 8 7 3.0275 3.1856 -3.6919 9 14 5.5089 1.9638 -3.8517 10 1 5.5986 0.5038 -4.1080 11 1 5.6502 2.7004 -5.1335 12 1 6.5944 2.3711 -2.9238 13 16 2.4122 2.1202 1.4287 14 8 1.6869 1.4415 2.4449 15 8 2.3056 3.5186 1.1998 16 7 4.0145 1.8137 1.7137 17 6 4.4266 0.7207 2.6073 18 6 5.4171 1.2790 3.6345 19 1 4.9063 1.9912 4.2827 20 6 5.9789 0.1329 4.4782 21 7 6.5161 1.9555 2.9329 22 6 7.5733 2.3547 3.8715 23 6 8.7998 2.8265 3.0877 24 6 6.0285 3.1104 2.1671 25 6 5.0630 2.6272 1.0796 26 1 5.6045 2.0234 0.3513 27 6 4.4279 3.8325 0.3835 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.3617 1.8098 -1.9453 34 1 2.0921 3.1803 -1.0755 35 1 3.2793 3.5882 -4.5378 36 1 4.9068 -0.0663 2.0258 37 1 3.5534 0.3190 3.1213 38 1 6.6005 0.5396 5.2758 39 1 5.1566 -0.4356 4.9125 40 1 6.5799 -0.5220 3.8473 41 1 7.2113 3.1662 4.5028 42 1 7.8461 1.5033 4.4950 43 1 9.1618 2.0151 2.4563 44 1 8.5269 3.6779 2.4641 45 1 9.5843 3.1223 3.7841 46 1 6.8720 3.6218 1.7034 47 1 5.5093 3.7975 2.8353 48 1 5.1911 4.3714 -0.1781 49 1 3.6493 3.4899 -0.2981 50 1 3.9911 4.4950 1.1307 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336954283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:40 Heat of formation + Delta-G solvation = -73.212276 kcal Electronic energy + Delta-G solvation = -30417.459177 eV Core-core repulsion = 26606.419245 eV Total energy + Delta-G solvation = -3811.039932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.50213 -38.61483 -37.72713 -36.90720 -36.43592 -34.66319 -34.29033 -31.61242 -31.54499 -30.01165 -28.44317 -26.91320 -26.03819 -24.89543 -23.26141 -23.05114 -22.65668 -21.00655 -19.70079 -18.67864 -18.43691 -17.99515 -17.41302 -16.87291 -16.74933 -16.14054 -16.04988 -15.57277 -15.39384 -15.34261 -14.82061 -14.66005 -14.52551 -14.18578 -14.03542 -13.68394 -13.59774 -13.47340 -13.29045 -13.19218 -13.02759 -12.86986 -12.73912 -12.71499 -12.68808 -12.65884 -12.43976 -12.23106 -12.10981 -12.05118 -12.02693 -11.74293 -11.68830 -11.51723 -11.44349 -11.09788 -10.51847 -10.04270 -9.72778 -9.23807 -8.11040 -6.22338 -0.28806 1.46763 1.47509 1.54348 1.96275 2.46239 2.57019 2.85955 3.21194 3.39514 3.61490 3.89216 3.99194 4.01621 4.06279 4.26135 4.27925 4.37250 4.42494 4.47344 4.49901 4.50521 4.63848 4.69189 4.69952 4.73540 4.78893 4.86534 4.91072 4.97986 5.01299 5.05944 5.14279 5.15610 5.19790 5.25175 5.33910 5.38347 5.41730 5.42894 5.55196 5.66482 5.74374 5.83903 6.03533 6.10720 6.15789 6.20434 6.87617 7.46398 8.96611 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010530 B = 0.006194 C = 0.004548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.361080 B = 4519.744798 C = 6155.273455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.260 3.740 5 C -0.526 4.526 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.926 5.926 9 Si 0.947 3.053 10 H -0.271 1.271 11 H -0.291 1.291 12 H -0.264 1.264 13 S 2.789 3.211 14 O -1.008 7.008 15 O -1.005 7.005 16 N -1.000 6.000 17 C 0.122 3.878 18 C 0.070 3.930 19 H 0.033 0.967 20 C -0.139 4.139 21 N -0.536 5.536 22 C 0.045 3.955 23 C -0.146 4.146 24 C 0.053 3.947 25 C 0.173 3.827 26 H 0.073 0.927 27 C -0.186 4.186 28 H 0.045 0.955 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.017 0.983 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.097 0.903 43 H 0.058 0.942 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.029 0.971 48 H 0.063 0.937 49 H 0.084 0.916 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.162 -6.257 14.485 17.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.838 5.838 4 C 0.136 3.864 5 C -0.565 4.565 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.566 5.566 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.217 1.217 12 H -0.188 1.188 13 S 2.800 3.200 14 O -0.992 6.992 15 O -0.989 6.989 16 N -0.841 5.841 17 C -0.004 4.004 18 C -0.041 4.041 19 H 0.051 0.949 20 C -0.197 4.197 21 N -0.262 5.262 22 C -0.082 4.082 23 C -0.204 4.204 24 C -0.076 4.076 25 C 0.067 3.933 26 H 0.091 0.909 27 C -0.245 4.245 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.110 0.890 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.115 0.885 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.115 0.885 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.102 0.898 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.716 -5.987 14.546 17.521 hybrid contribution 0.275 0.691 -0.733 1.044 sum 7.991 -5.296 13.814 16.815 Atomic orbital electron populations 1.22189 0.95899 1.03250 1.01242 1.21214 0.94604 0.81476 1.03049 1.57721 1.79180 1.23974 1.22909 1.18805 0.96530 0.90927 0.80105 1.21626 1.02123 1.27155 1.05577 0.91408 1.25630 1.00108 0.94791 0.97454 1.70050 1.37811 1.31210 1.17558 0.85773 0.80848 0.78375 0.77745 1.19626 1.21653 1.18835 1.01558 0.72971 0.73031 0.72403 1.93474 1.71212 1.76601 1.57908 1.93639 1.86783 1.32482 1.85991 1.58134 1.23309 1.43991 1.58666 1.21765 0.98775 0.88759 0.91071 1.21983 0.91428 0.96892 0.93748 0.94931 1.21854 1.01906 0.96809 0.99132 1.61985 1.11104 1.26253 1.26840 1.22268 0.91676 1.00152 0.94122 1.21794 0.96896 1.01140 1.00564 1.22497 0.97899 0.91898 0.95352 1.20886 0.87676 0.91067 0.93643 0.90865 1.22786 1.01921 0.97932 1.01839 0.93598 0.93360 0.88992 0.90198 0.89985 0.96463 0.95834 0.92739 0.89990 0.88629 0.90879 0.90683 0.91002 0.95309 0.88504 0.92279 0.93398 0.90701 0.88451 0.95305 0.91820 0.89798 0.91389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.19 10.24 71.99 0.74 -4.46 16 2 C 0.12 4.18 6.06 86.38 0.52 4.70 16 3 N -1.00 -41.33 2.82 -519.85 -1.47 -42.80 16 4 C 0.26 12.87 4.72 85.64 0.40 13.28 16 5 C -0.53 -26.49 7.81 25.60 0.20 -26.29 16 6 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 7 C 0.02 1.04 5.46 84.65 0.46 1.50 16 8 N -0.93 -52.48 13.29 21.45 0.28 -52.19 16 9 Si 0.95 41.43 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 13 S 2.79 113.21 5.72 -56.49 -0.32 112.89 16 14 O -1.01 -40.88 15.56 -128.00 -1.99 -42.88 16 15 O -1.00 -46.97 12.06 -128.00 -1.54 -48.51 16 16 N -1.00 -34.61 3.39 -489.93 -1.66 -36.27 16 17 C 0.12 3.35 5.97 86.35 0.52 3.86 16 18 C 0.07 1.64 2.60 44.99 0.12 1.76 16 19 H 0.03 0.84 8.14 -2.38 -0.02 0.82 16 20 C -0.14 -2.26 8.52 71.98 0.61 -1.65 16 21 N -0.54 -13.01 4.48 -870.02 -3.89 -16.90 16 22 C 0.04 0.84 5.37 86.31 0.46 1.30 16 23 C -0.15 -2.51 9.84 71.98 0.71 -1.80 16 24 C 0.05 1.52 4.75 86.38 0.41 1.93 16 25 C 0.17 6.06 3.67 44.96 0.17 6.23 16 26 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 27 C -0.19 -7.59 7.40 71.98 0.53 -7.06 16 28 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.08 2.72 8.11 -2.39 -0.02 2.70 16 32 H 0.08 2.44 7.61 -2.39 -0.02 2.42 16 33 H 0.02 0.91 8.11 -2.39 -0.02 0.89 16 34 H 0.02 1.32 5.84 -2.39 -0.01 1.30 16 35 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 36 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.10 2.55 6.79 -2.39 -0.02 2.53 16 38 H 0.07 0.98 6.49 -2.39 -0.02 0.97 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.03 0.55 8.12 -2.39 -0.02 0.53 16 42 H 0.10 1.47 5.77 -2.39 -0.01 1.46 16 43 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 0.90 6.40 -2.39 -0.02 0.88 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.10 2.53 6.16 -2.39 -0.01 2.51 16 47 H 0.03 0.86 8.13 -2.39 -0.02 0.84 16 48 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 49 H 0.08 3.99 2.19 -2.39 -0.01 3.98 16 50 H 0.07 2.81 6.55 -2.39 -0.02 2.80 16 Total: -1.00 -63.28 382.55 -1.81 -65.09 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.91 Total: 24.83 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: 5.85 Total: -6.70 kcal Atomic # 7 Polarization: -141.43 SS G_CDS: -6.74 Total: -148.17 kcal Atomic # 8 Polarization: -87.85 SS G_CDS: -3.54 Total: -91.39 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 113.21 SS G_CDS: -0.32 Total: 112.89 kcal Total: -63.28 -1.81 -65.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336954283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.125 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds