Wall clock time and date at job start Tue Mar 31 2020 17:28:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46498 * 109.47462 * 2 1
4 4 C 1.46501 * 120.00034 * 84.99257 * 3 2 1
5 5 C 1.50702 * 109.47279 * 277.10654 * 4 3 2
6 6 H 1.07997 * 119.99700 * 359.97438 * 5 4 3
7 7 C 1.37874 * 119.99697 * 180.02562 * 5 4 3
8 8 N 1.31519 * 120.00525 * 359.97438 * 7 5 4
9 9 Si 1.86803 * 119.99873 * 180.02562 * 7 5 4
10 10 H 1.48500 * 109.47324 * 179.97438 * 9 7 5
11 11 H 1.48504 * 109.47055 * 59.99717 * 9 7 5
12 12 H 1.48503 * 109.47007 * 300.00073 * 9 7 5
13 13 S 1.65599 * 120.00134 * 264.99875 * 3 2 1
14 14 O 1.42102 * 106.40335 * 34.20191 * 13 3 2
15 15 O 1.42095 * 106.40513 * 167.12393 * 13 3 2
16 16 N 1.65607 * 107.21786 * 280.66578 * 13 3 2
17 17 C 1.47076 * 120.88309 * 93.43832 * 16 13 3
18 18 C 1.53238 * 108.52050 * 128.81769 * 17 16 13
19 19 H 1.09003 * 109.49490 * 293.87016 * 18 17 16
20 20 C 1.52998 * 109.49064 * 173.79154 * 18 17 16
21 21 N 1.46894 * 109.33859 * 53.83346 * 18 17 16
22 22 C 1.46906 * 111.00007 * 172.74976 * 21 18 17
23 23 C 1.52997 * 109.47017 * 170.00031 * 22 21 18
24 24 C 1.46911 * 111.26672 * 296.89097 * 21 18 17
25 25 C 1.47077 * 120.87760 * 273.16455 * 16 13 3
26 26 H 1.08999 * 109.63515 * 111.47162 * 25 16 13
27 27 C 1.53003 * 109.62808 * 350.88755 * 25 16 13
28 28 H 1.08999 * 109.47556 * 300.00331 * 1 2 3
29 29 H 1.09007 * 109.46898 * 60.00614 * 1 2 3
30 30 H 1.09001 * 109.47366 * 180.02562 * 1 2 3
31 31 H 1.08999 * 109.47556 * 239.99669 * 2 1 3
32 32 H 1.09002 * 109.46889 * 119.99860 * 2 1 3
33 33 H 1.09002 * 109.47079 * 157.10817 * 4 3 2
34 34 H 1.08999 * 109.47131 * 37.11067 * 4 3 2
35 35 H 0.97001 * 119.99290 * 0.02562 * 8 7 5
36 36 H 1.08997 * 109.62896 * 248.53160 * 17 16 13
37 37 H 1.09003 * 109.62584 * 8.91444 * 17 16 13
38 38 H 1.08996 * 109.47737 * 60.00408 * 20 18 17
39 39 H 1.09004 * 109.47024 * 180.02562 * 20 18 17
40 40 H 1.09006 * 109.47123 * 299.99735 * 20 18 17
41 41 H 1.09004 * 109.46501 * 289.99263 * 22 21 18
42 42 H 1.08995 * 109.46928 * 49.99627 * 22 21 18
43 43 H 1.09000 * 109.46988 * 179.97438 * 23 22 21
44 44 H 1.09004 * 109.46857 * 299.99013 * 23 22 21
45 45 H 1.09000 * 109.47920 * 59.99641 * 23 22 21
46 46 H 1.09000 * 109.49036 * 183.06607 * 24 21 18
47 47 H 1.08993 * 109.49363 * 303.14517 * 24 21 18
48 48 H 1.08999 * 109.47020 * 54.94474 * 27 25 16
49 49 H 1.09003 * 109.47007 * 174.94044 * 27 25 16
50 50 H 1.09003 * 109.47245 * 294.93897 * 27 25 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.1582 2.1087 1.2639
5 6 0.8239 2.6855 1.6618
6 1 -0.0414 2.5264 1.0356
7 6 0.7084 3.4171 2.8247
8 7 1.7624 3.6112 3.5870
9 14 -0.9455 4.1314 3.3183
10 1 -0.8037 4.8690 4.5994
11 1 -1.9292 3.0318 3.4870
12 1 -1.4186 5.0609 2.2612
13 16 2.4123 2.1201 -1.4286
14 8 1.5089 1.6168 -2.4032
15 8 2.5515 3.5044 -1.1394
16 7 3.9164 1.5793 -1.8619
17 6 4.0740 0.4243 -2.7587
18 6 5.0234 0.8168 -3.8957
19 1 4.5558 1.5857 -4.5109
20 6 5.3256 -0.4120 -4.7556
21 7 6.2740 1.3371 -3.3274
22 6 7.2754 1.5640 -4.3780
23 6 8.4629 2.3315 -3.7935
24 6 6.0379 2.5623 -2.5519
25 6 5.1300 2.2450 -1.3647
26 1 5.6534 1.5841 -0.6739
27 6 4.7483 3.5432 -0.6507
28 1 -0.3634 0.5139 0.8899
29 1 -0.3633 0.5138 -0.8901
30 1 -0.3634 -1.0277 0.0005
31 1 1.8933 -0.5139 -0.8899
32 1 1.8932 -0.5138 0.8900
33 1 2.8806 2.9156 1.1407
34 1 2.5048 1.4260 2.0397
35 1 2.6212 3.2400 3.3308
36 1 4.4938 -0.4151 -2.2044
37 1 3.1036 0.1438 -3.1684
38 1 4.3972 -0.7992 -5.1752
39 1 6.0013 -0.1325 -5.5639
40 1 5.7942 -1.1799 -4.1400
41 1 7.6184 0.6048 -4.7661
42 1 6.8295 2.1444 -5.1856
43 1 9.2061 2.4994 -4.5730
44 1 8.1199 3.2907 -3.4054
45 1 8.9088 1.7511 -2.9858
46 1 6.9890 2.9527 -2.1900
47 1 5.5563 3.3068 -3.1858
48 1 4.0205 3.3272 0.1315
49 1 5.6382 3.9885 -0.2059
50 1 4.3142 4.2389 -1.3689
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000336954284.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 17:28:43
Heat of formation + Delta-G solvation = -50.196923 kcal
Electronic energy + Delta-G solvation = -29972.671892 eV
Core-core repulsion = 26162.629980 eV
Total energy + Delta-G solvation = -3810.041912 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 333.187 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-39.65766 -37.07052 -36.21602 -35.61873 -35.15010 -33.52965 -32.81784 -30.67174
-29.78932 -29.06820 -26.35475 -26.13964 -25.18740 -22.78043 -22.09471 -21.92126
-21.86669 -20.08652 -18.37350 -17.22804 -17.07699 -16.65579 -16.09983 -15.95326
-15.31450 -14.97507 -14.86046 -14.48489 -13.90907 -13.72806 -13.64184 -13.48696
-13.14459 -13.04682 -12.82621 -12.55165 -12.43539 -12.12170 -12.07439 -11.95855
-11.92352 -11.89456 -11.70907 -11.43065 -11.31431 -11.20943 -11.03641 -10.96280
-10.85243 -10.80105 -10.72171 -10.28968 -10.18328 -10.02190 -9.78163 -9.28322
-8.98732 -8.38555 -8.36086 -7.94032 -6.38079 -4.09845 1.12051 3.36094
3.44721 3.48323 3.65427 3.68297 4.02398 4.54000 4.59892 4.66372
4.75954 4.88538 4.96283 5.04478 5.16485 5.17978 5.24252 5.26609
5.30710 5.38048 5.41871 5.44910 5.57285 5.62095 5.71024 5.73855
5.78546 5.81260 5.82521 5.86819 5.92583 5.94252 6.06479 6.11145
6.23290 6.28172 6.38316 6.60223 6.72654 6.80471 6.92486 6.95166
6.99198 7.05606 7.29586 7.51474 8.03073 8.45493 8.80613 9.58612
10.99187
Molecular weight = 333.19amu
Principal moments of inertia in cm(-1)
A = 0.019633 B = 0.004047 C = 0.003610
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1425.832401 B = 6917.305434 C = 7754.924091
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.139 3.861
3 N -0.988 5.988
4 C 0.242 3.758
5 C -0.607 4.607
6 H 0.057 0.943
7 C 0.022 3.978
8 N -0.909 5.909
9 Si 1.066 2.934
10 H -0.282 1.282
11 H -0.287 1.287
12 H -0.287 1.287
13 S 2.776 3.224
14 O -0.995 6.995
15 O -0.962 6.962
16 N -1.011 6.011
17 C 0.128 3.872
18 C 0.071 3.929
19 H 0.045 0.955
20 C -0.146 4.146
21 N -0.532 5.532
22 C 0.050 3.950
23 C -0.158 4.158
24 C 0.043 3.957
25 C 0.160 3.840
26 H 0.077 0.923
27 C -0.185 4.185
28 H 0.080 0.920
29 H 0.055 0.945
30 H 0.049 0.951
31 H 0.054 0.946
32 H 0.069 0.931
33 H 0.039 0.961
34 H 0.022 0.978
35 H 0.267 0.733
36 H 0.072 0.928
37 H 0.094 0.906
38 H 0.064 0.936
39 H 0.058 0.942
40 H 0.067 0.933
41 H 0.077 0.923
42 H 0.031 0.969
43 H 0.058 0.942
44 H 0.059 0.941
45 H 0.064 0.936
46 H 0.093 0.907
47 H 0.038 0.962
48 H 0.088 0.912
49 H 0.061 0.939
50 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.207 -7.745 -14.208 19.684
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.233 4.233
2 C 0.012 3.988
3 N -0.829 5.829
4 C 0.119 3.881
5 C -0.647 4.647
6 H 0.076 0.924
7 C -0.183 4.183
8 N -0.545 5.545
9 Si 0.894 3.106
10 H -0.207 1.207
11 H -0.214 1.214
12 H -0.213 1.213
13 S 2.787 3.213
14 O -0.979 6.979
15 O -0.945 6.945
16 N -0.850 5.850
17 C 0.002 3.998
18 C -0.039 4.039
19 H 0.063 0.937
20 C -0.205 4.205
21 N -0.258 5.258
22 C -0.078 4.078
23 C -0.215 4.215
24 C -0.086 4.086
25 C 0.054 3.946
26 H 0.095 0.905
27 C -0.243 4.243
28 H 0.099 0.901
29 H 0.075 0.925
30 H 0.068 0.932
31 H 0.073 0.927
32 H 0.088 0.912
33 H 0.057 0.943
34 H 0.040 0.960
35 H 0.077 0.923
36 H 0.090 0.910
37 H 0.112 0.888
38 H 0.083 0.917
39 H 0.077 0.923
40 H 0.086 0.914
41 H 0.096 0.904
42 H 0.049 0.951
43 H 0.077 0.923
44 H 0.078 0.922
45 H 0.084 0.916
46 H 0.111 0.889
47 H 0.056 0.944
48 H 0.106 0.894
49 H 0.079 0.921
50 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 10.076 -6.583 -13.186 17.853
hybrid contribution 0.690 -0.632 -1.557 1.816
sum 10.766 -7.214 -14.743 19.629
Atomic orbital electron populations
1.22287 0.96158 1.00815 1.03997 1.20907 0.94997 0.82164 1.00728
1.57652 1.78388 1.22993 1.23913 1.19284 0.98230 0.90857 0.79694
1.22347 0.95384 1.36694 1.10258 0.92448 1.25760 1.04471 0.94862
0.93174 1.70822 1.00735 1.43727 1.39192 0.83584 0.74162 0.76480
0.76363 1.20690 1.21397 1.21302 1.02215 0.72275 0.73964 0.72809
1.93504 1.61722 1.82047 1.60613 1.93721 1.85544 1.30805 1.84468
1.58593 1.23069 1.42847 1.60484 1.21510 0.99842 0.88251 0.90211
1.21958 0.90058 0.97050 0.94876 0.93715 1.21869 1.02018 0.97311
0.99257 1.62014 1.09291 1.30011 1.24477 1.22116 0.92697 1.00030
0.92911 1.21966 0.97561 1.00481 1.01539 1.22591 0.99947 0.90759
0.95339 1.20960 0.84808 0.94259 0.94572 0.90471 1.22892 1.02038
0.96308 1.03037 0.90130 0.92545 0.93155 0.92716 0.91242 0.94320
0.96045 0.92298 0.90983 0.88829 0.91750 0.92277 0.91433 0.90418
0.95118 0.92295 0.92183 0.91649 0.88922 0.94415 0.89356 0.92057
0.89271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -3.16 9.78 37.15 0.36 -2.80 16
2 C 0.14 2.46 6.09 -4.05 -0.02 2.44 16
3 N -0.99 -20.55 2.87 -115.67 -0.33 -20.89 16
4 C 0.24 5.90 4.46 -5.19 -0.02 5.88 16
5 C -0.61 -16.79 8.40 -34.44 -0.29 -17.08 16
6 H 0.06 1.60 6.66 -52.49 -0.35 1.25 16
7 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16
8 N -0.91 -26.85 13.65 55.43 0.76 -26.10 16
9 Si 1.07 25.36 29.90 -169.99 -5.08 20.27 16
10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16
12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
13 S 2.78 55.96 5.63 -107.50 -0.61 55.35 16
14 O -1.00 -21.29 15.74 -57.17 -0.90 -22.19 16
15 O -0.96 -22.14 11.86 -57.17 -0.68 -22.81 16
16 N -1.01 -15.98 3.39 -106.45 -0.36 -16.35 16
17 C 0.13 1.68 5.96 -3.60 -0.02 1.66 16
18 C 0.07 0.82 2.56 -67.59 -0.17 0.64 16
19 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
20 C -0.15 -1.28 8.73 37.16 0.32 -0.95 16
21 N -0.53 -5.99 4.63 -226.64 -1.05 -7.03 16
22 C 0.05 0.45 5.03 -3.82 -0.02 0.43 16
23 C -0.16 -1.25 9.16 37.16 0.34 -0.91 16
24 C 0.04 0.53 4.31 -3.93 -0.02 0.51 16
25 C 0.16 2.33 3.66 -67.72 -0.25 2.09 16
26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16
27 C -0.18 -3.07 7.51 37.16 0.28 -2.80 16
28 H 0.08 1.66 6.39 -51.93 -0.33 1.32 16
29 H 0.06 1.09 7.84 -51.93 -0.41 0.68 16
30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16
31 H 0.05 0.83 7.89 -51.93 -0.41 0.42 16
32 H 0.07 1.16 8.02 -51.93 -0.42 0.74 16
33 H 0.04 0.99 4.63 -51.93 -0.24 0.75 16
34 H 0.02 0.53 7.90 -51.93 -0.41 0.12 16
35 H 0.27 7.74 7.22 -40.82 -0.29 7.44 16
36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
37 H 0.09 1.25 6.86 -51.93 -0.36 0.89 16
38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.06 0.46 6.55 -51.93 -0.34 0.12 16
40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
41 H 0.08 0.63 6.85 -51.93 -0.36 0.27 16
42 H 0.03 0.29 8.08 -51.93 -0.42 -0.13 16
43 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16
44 H 0.06 0.49 6.18 -51.93 -0.32 0.17 16
45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
46 H 0.09 0.98 5.73 -51.93 -0.30 0.68 16
47 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16
48 H 0.09 1.76 3.55 -51.93 -0.18 1.58 16
49 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16
50 H 0.09 1.60 6.55 -51.93 -0.34 1.26 16
LS Contribution 378.44 15.07 5.70 5.70
Total: -1.00 -32.41 378.44 -10.65 -43.06
By element:
Atomic # 1 Polarization: 9.84 SS G_CDS: -8.50 Total: 1.34 kcal
Atomic # 6 Polarization: -10.76 SS G_CDS: 0.39 Total: -10.36 kcal
Atomic # 7 Polarization: -69.38 SS G_CDS: -0.98 Total: -70.36 kcal
Atomic # 8 Polarization: -43.43 SS G_CDS: -1.58 Total: -45.00 kcal
Atomic # 14 Polarization: 25.36 SS G_CDS: -5.08 Total: 20.27 kcal
Atomic # 16 Polarization: 55.96 SS G_CDS: -0.61 Total: 55.35 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -32.41 -10.65 -43.06 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000336954284.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal
(2) G-P(sol) polarization free energy of solvation -32.408 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.545 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.060 kcal
(6) G-S(sol) free energy of system = (1) + (5) -50.197 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds