Wall clock time and date at job start Tue Mar 31 2020 17:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47205 * 2 1 4 4 C 1.46898 * 110.99746 * 66.04682 * 3 2 1 5 5 C 1.46892 * 111.00084 * 190.00150 * 3 2 1 6 6 C 1.52999 * 109.47106 * 75.61739 * 5 3 2 7 7 H 1.09000 * 110.88482 * 308.19484 * 6 5 3 8 8 C 1.55154 * 111.00537 * 72.12443 * 6 5 3 9 9 C 1.54338 * 103.02449 * 153.38166 * 8 6 5 10 10 N 1.47029 * 107.26107 * 338.14029 * 9 8 6 11 11 S 1.65598 * 125.64361 * 178.85244 * 10 9 8 12 12 O 1.42099 * 106.40230 * 156.14883 * 11 10 9 13 13 O 1.42098 * 106.40617 * 23.23113 * 11 10 9 14 14 N 1.65600 * 107.21683 * 269.68538 * 11 10 9 15 15 C 1.46504 * 119.99698 * 90.00229 * 14 11 10 16 16 C 1.52997 * 109.47055 * 94.99973 * 15 14 11 17 17 C 1.46501 * 120.00372 * 270.00412 * 14 11 10 18 18 C 1.50697 * 109.46804 * 265.00143 * 17 14 11 19 19 H 1.08001 * 120.00334 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99910 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99905 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47302 * 90.00032 * 22 20 18 24 24 H 1.48500 * 109.46931 * 209.99599 * 22 20 18 25 25 H 1.48490 * 109.47134 * 329.99714 * 22 20 18 26 26 C 1.47419 * 108.70488 * 358.58560 * 10 9 8 27 27 H 1.09002 * 109.46993 * 59.99439 * 1 2 3 28 28 H 1.08997 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47172 * 300.00176 * 1 2 3 30 30 H 1.08998 * 109.46779 * 240.00491 * 2 1 3 31 31 H 1.08997 * 109.47101 * 120.00101 * 2 1 3 32 32 H 1.09002 * 109.46970 * 187.89202 * 4 3 2 33 33 H 1.08995 * 109.47530 * 307.89646 * 4 3 2 34 34 H 1.09002 * 109.47349 * 67.90045 * 4 3 2 35 35 H 1.09001 * 109.47166 * 315.61912 * 5 3 2 36 36 H 1.08999 * 109.47250 * 195.61848 * 5 3 2 37 37 H 1.09000 * 110.71853 * 271.94029 * 8 6 5 38 38 H 1.08998 * 110.72224 * 35.03264 * 8 6 5 39 39 H 1.08995 * 109.99362 * 218.66719 * 9 8 6 40 40 H 1.08999 * 109.78097 * 97.48920 * 9 8 6 41 41 H 1.09004 * 109.47279 * 335.00459 * 15 14 11 42 42 H 1.08991 * 109.47199 * 214.99894 * 15 14 11 43 43 H 1.09000 * 109.47459 * 300.00468 * 16 15 14 44 44 H 1.09007 * 109.47180 * 60.00121 * 16 15 14 45 45 H 1.08999 * 109.47573 * 180.02562 * 16 15 14 46 46 H 1.08993 * 109.46657 * 24.99795 * 17 14 11 47 47 H 1.08999 * 109.47333 * 144.99995 * 17 14 11 48 48 H 0.97002 * 120.00438 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.37105 * 143.19543 * 26 10 9 50 50 H 1.09007 * 110.37024 * 265.41045 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4311 -0.2382 6 6 3.7504 1.1705 -1.7192 7 1 3.2535 0.2603 -2.0550 8 6 3.3319 2.3864 -2.5874 9 6 4.2589 2.2720 -3.8160 10 7 5.4197 1.4647 -3.4131 11 16 6.6849 1.0376 -4.3924 12 8 7.7879 0.7811 -3.5341 13 8 6.7224 1.9962 -5.4407 14 7 6.2934 -0.4096 -5.0959 15 6 5.5792 -0.4328 -6.3749 16 6 6.5864 -0.5656 -7.5189 17 6 6.6610 -1.6665 -4.4392 18 6 7.9712 -2.1600 -4.9969 19 1 8.4790 -1.5942 -5.7640 20 6 8.5211 -3.3344 -4.5285 21 7 7.9025 -4.0236 -3.5947 22 14 10.1448 -3.9465 -5.2202 23 1 11.2650 -3.3926 -4.4179 24 1 10.1800 -5.4299 -5.1613 25 1 10.2801 -3.5037 -6.6311 26 6 5.2740 1.1039 -1.9911 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9186 3.1251 1.1727 33 1 0.6021 1.9576 1.4408 34 1 2.2308 1.6239 2.0765 35 1 3.9603 0.6680 0.3651 36 1 3.8508 2.4141 0.0370 37 1 2.2855 2.3078 -2.8822 38 1 3.5119 3.3205 -2.0552 39 1 4.5872 3.2632 -4.1287 40 1 3.7304 1.7796 -4.6323 41 1 5.0152 0.4924 -6.4930 42 1 4.8946 -1.2807 -6.3933 43 1 7.2711 0.2823 -7.5004 44 1 7.1505 -1.4908 -7.4009 45 1 6.0552 -0.5824 -8.4706 46 1 6.7623 -1.5000 -3.3668 47 1 5.8858 -2.4111 -4.6198 48 1 8.2896 -4.8497 -3.2649 49 1 5.6469 0.0949 -1.8156 50 1 5.8048 1.8186 -1.3620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337053467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:32 Heat of formation + Delta-G solvation = -72.747448 kcal Electronic energy + Delta-G solvation = -28687.035715 eV Core-core repulsion = 24876.015939 eV Total energy + Delta-G solvation = -3811.019776 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.07949 -37.22969 -36.59447 -36.00689 -35.10743 -32.57755 -32.10537 -30.40932 -29.79906 -29.28293 -26.81414 -26.64247 -24.26049 -22.76222 -22.22110 -21.69950 -21.46812 -20.04551 -18.47435 -17.17933 -16.99368 -16.37525 -16.24877 -15.66251 -15.42493 -15.24067 -14.56812 -14.48282 -13.91816 -13.77724 -13.55307 -13.36697 -13.18806 -12.93978 -12.83509 -12.77844 -12.43723 -12.19428 -12.07092 -11.98807 -11.79485 -11.48726 -11.45602 -11.44421 -11.22261 -11.21044 -11.10813 -10.98053 -10.95199 -10.90534 -10.79791 -10.47956 -10.43005 -10.37640 -9.88594 -9.60820 -8.77090 -8.52611 -8.41506 -8.05272 -6.04883 -4.07624 1.20072 3.33340 3.39289 3.42512 3.53521 3.68609 4.14478 4.45952 4.54144 4.60395 4.77619 4.82062 4.99075 5.07756 5.15543 5.22098 5.28963 5.29692 5.36622 5.40912 5.44621 5.45783 5.55241 5.59595 5.64805 5.68702 5.74366 5.81580 5.87929 5.93742 5.96075 5.97607 6.00673 6.09953 6.18245 6.29719 6.38445 6.46270 6.59526 6.77740 6.85810 6.87105 7.01089 7.24578 7.44054 7.66226 7.93297 8.23326 8.94448 9.56982 11.03847 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003591 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.091834 B = 7795.912714 C = 8803.205697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 N -0.540 5.540 4 C 0.022 3.978 5 C 0.063 3.937 6 C -0.093 4.093 7 H 0.087 0.913 8 C -0.108 4.108 9 C 0.120 3.880 10 N -1.023 6.023 11 S 2.791 3.209 12 O -0.961 6.961 13 O -0.992 6.992 14 N -0.992 5.992 15 C 0.136 3.864 16 C -0.172 4.172 17 C 0.259 3.741 18 C -0.524 4.524 19 H 0.063 0.937 20 C 0.062 3.938 21 N -0.897 5.897 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.128 3.872 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.042 0.958 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.052 0.948 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.035 0.965 47 H 0.033 0.967 48 H 0.263 0.737 49 H 0.078 0.922 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.515 10.597 6.161 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.083 4.083 3 N -0.265 5.265 4 C -0.126 4.126 5 C -0.065 4.065 6 C -0.113 4.113 7 H 0.105 0.895 8 C -0.147 4.147 9 C -0.006 4.006 10 N -0.862 5.862 11 S 2.801 3.199 12 O -0.944 6.944 13 O -0.976 6.976 14 N -0.834 5.834 15 C 0.010 3.990 16 C -0.231 4.231 17 C 0.137 3.863 18 C -0.563 4.563 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.536 5.536 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.001 3.999 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.097 0.903 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.857 11.148 5.701 19.430 hybrid contribution 1.003 -1.169 0.419 1.596 sum -13.854 9.979 6.120 18.137 Atomic orbital electron populations 1.21801 0.94976 1.01534 1.02250 1.22170 0.95991 0.88905 1.01214 1.61979 1.13917 1.16074 1.34496 1.22424 1.01257 0.99102 0.89851 1.22067 0.87414 1.01531 0.95480 1.22363 0.95053 0.99507 0.94423 0.89501 1.22525 0.99214 0.98001 0.94954 1.21679 0.86368 0.95014 0.97559 1.59410 1.39035 1.66368 1.21351 1.01709 0.72788 0.72794 0.72629 1.93621 1.48112 1.85233 1.67474 1.93526 1.86609 1.61291 1.56200 1.57864 1.71944 1.23504 1.30123 1.20938 0.94036 1.00808 0.83236 1.22259 1.00169 1.03803 0.96878 1.19022 0.95857 0.79187 0.92201 1.21532 1.05906 1.06961 1.21947 0.91927 1.24922 0.97557 0.96558 0.94975 1.69916 1.39126 1.16037 1.28543 0.86553 0.84046 0.77642 0.79551 1.20474 1.21214 1.19790 1.21902 0.95574 1.00996 0.81397 0.91851 0.92349 0.92882 0.90278 0.94905 0.91466 0.91216 0.95778 0.93981 0.90511 0.90113 0.91051 0.91666 0.92158 0.92311 0.91186 0.92868 0.90277 0.93092 0.94760 0.94850 0.92789 0.90340 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.85 37.16 0.37 -0.75 16 2 C 0.04 0.40 5.51 -3.82 -0.02 0.38 16 3 N -0.54 -4.90 4.63 -242.93 -1.12 -6.02 16 4 C 0.02 0.16 9.36 60.06 0.56 0.73 16 5 C 0.06 0.61 4.45 -3.83 -0.02 0.59 16 6 C -0.09 -1.03 3.09 -88.47 -0.27 -1.31 16 7 H 0.09 1.01 6.69 -51.93 -0.35 0.67 16 8 C -0.11 -1.11 6.36 -24.89 -0.16 -1.27 16 9 C 0.12 1.53 6.99 -3.05 -0.02 1.51 16 10 N -1.02 -16.40 3.75 -111.41 -0.42 -16.82 16 11 S 2.79 57.63 6.26 -107.50 -0.67 56.95 16 12 O -0.96 -23.58 16.69 -57.18 -0.95 -24.54 16 13 O -0.99 -21.33 16.69 -57.18 -0.95 -22.28 16 14 N -0.99 -20.86 2.86 -115.67 -0.33 -21.19 16 15 C 0.14 2.43 6.09 -4.04 -0.02 2.41 16 16 C -0.17 -3.12 9.83 37.16 0.37 -2.75 16 17 C 0.26 6.45 5.12 -5.19 -0.03 6.42 16 18 C -0.52 -14.56 8.41 -34.44 -0.29 -14.85 16 19 H 0.06 1.75 6.89 -52.49 -0.36 1.38 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 22 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.13 1.81 6.45 -2.53 -0.02 1.79 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.37 6.40 -51.93 -0.33 0.03 16 30 H 0.08 0.76 6.58 -51.93 -0.34 0.42 16 31 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.47 6.15 -51.93 -0.32 0.15 16 34 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.04 0.42 8.00 -51.93 -0.42 0.01 16 36 H 0.08 0.69 7.78 -51.93 -0.40 0.28 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.68 7.92 -51.93 -0.41 0.26 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.92 7.61 -51.93 -0.40 0.52 16 42 H 0.07 1.15 8.00 -51.93 -0.42 0.74 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 1.60 6.59 -51.93 -0.34 1.26 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.91 7.61 -51.93 -0.40 0.51 16 47 H 0.03 0.84 8.00 -51.93 -0.42 0.43 16 48 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 49 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 50 H 0.06 0.85 8.04 -51.93 -0.42 0.44 16 LS Contribution 402.10 15.07 6.06 6.06 Total: -1.00 -32.82 402.10 -11.43 -44.25 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -9.10 Total: -2.56 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 0.35 Total: -5.46 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: -1.14 Total: -69.27 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.91 Total: -46.82 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 57.63 SS G_CDS: -0.67 Total: 56.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.82 -11.43 -44.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337053467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.497 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds