Wall clock time and date at job start Tue Mar 31 2020 17:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46901 * 109.47205 * 2 1 4 4 C 1.46898 * 110.99746 * 66.04682 * 3 2 1 5 5 C 1.46892 * 111.00084 * 190.00150 * 3 2 1 6 6 C 1.52999 * 109.47106 * 75.61739 * 5 3 2 7 7 H 1.09000 * 110.88482 * 308.19484 * 6 5 3 8 8 C 1.55154 * 111.00537 * 72.12443 * 6 5 3 9 9 C 1.54338 * 103.02449 * 153.38166 * 8 6 5 10 10 N 1.47029 * 107.26107 * 338.14029 * 9 8 6 11 11 S 1.65598 * 125.64361 * 178.85244 * 10 9 8 12 12 O 1.42099 * 106.40230 * 156.14883 * 11 10 9 13 13 O 1.42098 * 106.40617 * 23.23113 * 11 10 9 14 14 N 1.65600 * 107.21683 * 269.68538 * 11 10 9 15 15 C 1.46504 * 119.99698 * 90.00229 * 14 11 10 16 16 C 1.52997 * 109.47055 * 94.99973 * 15 14 11 17 17 C 1.46501 * 120.00372 * 270.00412 * 14 11 10 18 18 C 1.50697 * 109.46804 * 265.00143 * 17 14 11 19 19 H 1.08001 * 120.00334 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99910 * 180.02562 * 18 17 14 21 21 N 1.31516 * 119.99905 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00206 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47302 * 90.00032 * 22 20 18 24 24 H 1.48500 * 109.46931 * 209.99599 * 22 20 18 25 25 H 1.48490 * 109.47134 * 329.99714 * 22 20 18 26 26 C 1.47419 * 108.70488 * 358.58560 * 10 9 8 27 27 H 1.09002 * 109.46993 * 59.99439 * 1 2 3 28 28 H 1.08997 * 109.47538 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47172 * 300.00176 * 1 2 3 30 30 H 1.08998 * 109.46779 * 240.00491 * 2 1 3 31 31 H 1.08997 * 109.47101 * 120.00101 * 2 1 3 32 32 H 1.09002 * 109.46970 * 187.89202 * 4 3 2 33 33 H 1.08995 * 109.47530 * 307.89646 * 4 3 2 34 34 H 1.09002 * 109.47349 * 67.90045 * 4 3 2 35 35 H 1.09001 * 109.47166 * 315.61912 * 5 3 2 36 36 H 1.08999 * 109.47250 * 195.61848 * 5 3 2 37 37 H 1.09000 * 110.71853 * 271.94029 * 8 6 5 38 38 H 1.08998 * 110.72224 * 35.03264 * 8 6 5 39 39 H 1.08995 * 109.99362 * 218.66719 * 9 8 6 40 40 H 1.08999 * 109.78097 * 97.48920 * 9 8 6 41 41 H 1.09004 * 109.47279 * 335.00459 * 15 14 11 42 42 H 1.08991 * 109.47199 * 214.99894 * 15 14 11 43 43 H 1.09000 * 109.47459 * 300.00468 * 16 15 14 44 44 H 1.09007 * 109.47180 * 60.00121 * 16 15 14 45 45 H 1.08999 * 109.47573 * 180.02562 * 16 15 14 46 46 H 1.08993 * 109.46657 * 24.99795 * 17 14 11 47 47 H 1.08999 * 109.47333 * 144.99995 * 17 14 11 48 48 H 0.97002 * 120.00438 * 180.02562 * 21 20 18 49 49 H 1.09000 * 110.37105 * 143.19543 * 26 10 9 50 50 H 1.09007 * 110.37024 * 265.41045 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 1.2533 5 6 3.4684 1.4311 -0.2382 6 6 3.7504 1.1705 -1.7192 7 1 3.2535 0.2603 -2.0550 8 6 3.3319 2.3864 -2.5874 9 6 4.2589 2.2720 -3.8160 10 7 5.4197 1.4647 -3.4131 11 16 6.6849 1.0376 -4.3924 12 8 7.7879 0.7811 -3.5341 13 8 6.7224 1.9962 -5.4407 14 7 6.2934 -0.4096 -5.0959 15 6 5.5792 -0.4328 -6.3749 16 6 6.5864 -0.5656 -7.5189 17 6 6.6610 -1.6665 -4.4392 18 6 7.9712 -2.1600 -4.9969 19 1 8.4790 -1.5942 -5.7640 20 6 8.5211 -3.3344 -4.5285 21 7 7.9025 -4.0236 -3.5947 22 14 10.1448 -3.9465 -5.2202 23 1 11.2650 -3.3926 -4.4179 24 1 10.1800 -5.4299 -5.1613 25 1 10.2801 -3.5037 -6.6311 26 6 5.2740 1.1039 -1.9911 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.9186 3.1251 1.1727 33 1 0.6021 1.9576 1.4408 34 1 2.2308 1.6239 2.0765 35 1 3.9603 0.6680 0.3651 36 1 3.8508 2.4141 0.0370 37 1 2.2855 2.3078 -2.8822 38 1 3.5119 3.3205 -2.0552 39 1 4.5872 3.2632 -4.1287 40 1 3.7304 1.7796 -4.6323 41 1 5.0152 0.4924 -6.4930 42 1 4.8946 -1.2807 -6.3933 43 1 7.2711 0.2823 -7.5004 44 1 7.1505 -1.4908 -7.4009 45 1 6.0552 -0.5824 -8.4706 46 1 6.7623 -1.5000 -3.3668 47 1 5.8858 -2.4111 -4.6198 48 1 8.2896 -4.8497 -3.2649 49 1 5.6469 0.0949 -1.8156 50 1 5.8048 1.8186 -1.3620 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337053467.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:31 Heat of formation + Delta-G solvation = -95.879283 kcal Electronic energy + Delta-G solvation = -28688.038786 eV Core-core repulsion = 24876.015939 eV Total energy + Delta-G solvation = -3812.022847 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.01455 -38.33044 -38.07878 -37.71839 -36.86913 -34.65630 -33.03458 -31.46713 -31.17308 -30.27648 -28.69985 -27.50996 -25.06044 -24.67906 -23.55669 -23.05987 -22.23807 -20.91082 -19.93997 -18.87420 -18.59675 -18.26322 -17.41701 -16.93678 -16.43016 -16.37784 -16.09638 -15.45310 -15.39022 -14.91893 -14.69291 -14.59573 -14.56042 -14.44565 -13.99774 -13.94449 -13.72127 -13.62720 -13.20765 -13.18605 -13.16846 -13.03137 -12.85721 -12.80084 -12.78332 -12.66818 -12.45326 -12.28452 -12.17405 -12.13642 -11.99082 -11.73867 -11.69028 -11.66125 -11.52454 -11.29752 -10.58770 -10.04653 -9.79628 -9.23538 -8.19552 -6.29381 -0.40815 1.37545 1.40381 1.49260 2.02772 2.39664 2.58394 2.92316 3.11481 3.28148 3.62150 3.84073 3.91481 3.95893 4.15751 4.30684 4.34503 4.40102 4.44666 4.47275 4.51276 4.56108 4.60437 4.67111 4.69597 4.70238 4.78051 4.83710 4.94264 4.96676 4.98940 5.06288 5.09297 5.13341 5.14417 5.15961 5.20113 5.24060 5.41140 5.42607 5.46144 5.48797 5.59348 5.73217 5.97962 6.12698 6.13868 6.19369 6.78026 7.38402 8.88289 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003591 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.091834 B = 7795.912714 C = 8803.205697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.043 3.957 3 N -0.543 5.543 4 C 0.021 3.979 5 C 0.067 3.933 6 C -0.082 4.082 7 H 0.080 0.920 8 C -0.094 4.094 9 C 0.108 3.892 10 N -1.020 6.020 11 S 2.803 3.197 12 O -1.008 7.008 13 O -1.002 7.002 14 N -0.998 5.998 15 C 0.126 3.874 16 C -0.170 4.170 17 C 0.277 3.723 18 C -0.540 4.540 19 H 0.054 0.946 20 C 0.013 3.987 21 N -0.924 5.924 22 Si 0.951 3.049 23 H -0.281 1.281 24 H -0.274 1.274 25 H -0.266 1.266 26 C 0.120 3.880 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.022 0.978 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.051 0.949 45 H 0.088 0.912 46 H 0.011 0.989 47 H 0.027 0.973 48 H 0.266 0.734 49 H 0.054 0.946 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.209 11.638 5.910 21.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.267 5.267 4 C -0.126 4.126 5 C -0.061 4.061 6 C -0.103 4.103 7 H 0.098 0.902 8 C -0.133 4.133 9 C -0.016 4.016 10 N -0.862 5.862 11 S 2.814 3.186 12 O -0.992 6.992 13 O -0.986 6.986 14 N -0.839 5.839 15 C 0.001 3.999 16 C -0.229 4.229 17 C 0.153 3.847 18 C -0.579 4.579 19 H 0.073 0.927 20 C -0.186 4.186 21 N -0.564 5.564 22 Si 0.776 3.224 23 H -0.207 1.207 24 H -0.199 1.199 25 H -0.190 1.190 26 C -0.006 4.006 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.029 0.971 47 H 0.045 0.955 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.562 12.199 5.423 21.273 hybrid contribution 1.457 -1.434 0.516 2.108 sum -15.104 10.766 5.939 19.476 Atomic orbital electron populations 1.21755 0.93764 1.01971 1.02506 1.22191 0.96985 0.88864 1.00486 1.61985 1.13132 1.16090 1.35482 1.22479 1.01829 0.99346 0.88988 1.22001 0.88103 1.01915 0.94105 1.22258 0.92325 0.99913 0.95807 0.90159 1.22499 0.99372 0.97953 0.93472 1.22031 0.85563 0.94765 0.99245 1.59015 1.39143 1.66440 1.21602 1.01016 0.72834 0.72496 0.72245 1.93553 1.51246 1.85827 1.68590 1.93499 1.87065 1.61278 1.56789 1.57771 1.72477 1.22134 1.31478 1.21246 0.94134 1.02934 0.81560 1.22232 1.00112 1.01595 0.99001 1.18567 0.94636 0.80466 0.91034 1.21840 1.07101 1.07157 1.21824 0.92728 1.25692 1.00737 0.96854 0.95341 1.70003 1.40531 1.16459 1.29450 0.85665 0.79947 0.77677 0.79113 1.20690 1.19905 1.18986 1.22087 0.98182 0.99930 0.80433 0.92050 0.91893 0.92075 0.91373 0.95366 0.90588 0.90287 0.95945 0.94798 0.89324 0.88359 0.89610 0.91082 0.91060 0.89520 0.89688 0.94402 0.92961 0.89376 0.97067 0.95498 0.92504 0.92765 0.90723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.85 71.98 0.71 -1.19 16 2 C 0.04 0.71 5.51 86.30 0.48 1.18 16 3 N -0.54 -8.78 4.63 -922.49 -4.27 -13.05 16 4 C 0.02 0.27 9.36 127.69 1.20 1.47 16 5 C 0.07 1.20 4.45 86.30 0.38 1.58 16 6 C -0.08 -1.73 3.09 -9.40 -0.03 -1.76 16 7 H 0.08 1.81 6.69 -2.39 -0.02 1.80 16 8 C -0.09 -1.67 6.36 31.79 0.20 -1.47 16 9 C 0.11 2.55 6.99 86.73 0.61 3.15 16 10 N -1.02 -32.30 3.75 -506.38 -1.90 -34.20 16 11 S 2.80 117.15 6.26 -56.49 -0.35 116.79 16 12 O -1.01 -51.30 16.69 -128.00 -2.14 -53.43 16 13 O -1.00 -42.70 16.69 -128.00 -2.14 -44.83 16 14 N -1.00 -42.39 2.86 -519.86 -1.48 -43.88 16 15 C 0.13 4.38 6.09 86.38 0.53 4.90 16 16 C -0.17 -6.04 9.83 71.98 0.71 -5.33 16 17 C 0.28 14.18 5.12 85.63 0.44 14.61 16 18 C -0.54 -30.71 8.41 25.60 0.22 -30.49 16 19 H 0.05 3.12 6.89 -2.91 -0.02 3.10 16 20 C 0.01 0.74 5.46 84.65 0.46 1.20 16 21 N -0.92 -54.42 13.29 21.45 0.28 -54.14 16 22 Si 0.95 45.15 29.54 68.60 2.03 47.17 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 C 0.12 3.40 6.45 86.86 0.56 3.96 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.71 6.40 -2.39 -0.02 0.70 16 30 H 0.07 1.27 6.58 -2.39 -0.02 1.26 16 31 H 0.03 0.49 8.12 -2.39 -0.02 0.47 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.08 0.87 6.15 -2.39 -0.01 0.86 16 34 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.03 0.66 8.00 -2.39 -0.02 0.64 16 36 H 0.09 1.38 7.78 -2.39 -0.02 1.36 16 37 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.33 7.92 -2.39 -0.02 1.31 16 39 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.09 2.52 7.61 -2.38 -0.02 2.50 16 42 H 0.08 2.68 8.00 -2.39 -0.02 2.66 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.05 2.12 6.59 -2.38 -0.02 2.10 16 45 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 46 H 0.01 0.63 7.61 -2.39 -0.02 0.61 16 47 H 0.03 1.40 8.00 -2.39 -0.02 1.38 16 48 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 49 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.07 1.96 8.04 -2.38 -0.02 1.94 16 Total: -1.00 -71.42 402.10 -2.63 -74.05 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.89 Total: 13.70 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 6.45 Total: -8.18 kcal Atomic # 7 Polarization: -137.89 SS G_CDS: -7.37 Total: -145.26 kcal Atomic # 8 Polarization: -94.00 SS G_CDS: -4.27 Total: -98.27 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Atomic # 16 Polarization: 117.15 SS G_CDS: -0.35 Total: 116.79 kcal Total: -71.42 -2.63 -74.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337053467.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.826 kcal (2) G-P(sol) polarization free energy of solvation -71.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds