Wall clock time and date at job start Tue Mar 31 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.46507 * 119.99966 * 274.05988 * 3 2 1 5 5 C 1.50701 * 109.46834 * 280.93815 * 4 3 2 6 6 H 1.07991 * 120.00505 * 3.26854 * 5 4 3 7 7 C 1.37884 * 119.99700 * 183.27106 * 5 4 3 8 8 N 1.31519 * 119.99959 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99813 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47121 * 59.99986 * 9 7 5 11 11 H 1.48503 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47012 * 299.99787 * 9 7 5 13 13 S 1.65598 * 120.00276 * 94.06120 * 3 2 1 14 14 O 1.42104 * 106.40113 * 336.46188 * 13 3 2 15 15 O 1.42099 * 106.40521 * 203.54033 * 13 3 2 16 16 N 1.65597 * 107.21913 * 89.99775 * 13 3 2 17 17 C 1.46497 * 120.00261 * 65.59905 * 16 13 3 18 18 C 1.52999 * 109.47385 * 164.32858 * 17 16 13 19 19 N 1.46901 * 109.47091 * 180.02562 * 18 17 16 20 20 C 1.46896 * 111.00415 * 66.04716 * 19 18 17 21 21 C 1.46903 * 110.99817 * 190.00418 * 19 18 17 22 22 C 1.54955 * 110.92530 * 66.53752 * 21 19 18 23 23 C 1.54269 * 104.16290 * 156.29539 * 22 21 19 24 24 C 1.53873 * 106.63708 * 336.44816 * 23 22 21 25 25 C 1.54266 * 106.59965 * 359.97271 * 24 23 22 26 26 H 1.08999 * 109.47272 * 65.04744 * 1 2 3 27 27 H 1.08997 * 109.47196 * 185.04937 * 1 2 3 28 28 H 1.09005 * 109.47277 * 305.05235 * 1 2 3 29 29 H 1.09000 * 109.46908 * 240.00366 * 2 1 3 30 30 H 1.08997 * 109.47254 * 120.00173 * 2 1 3 31 31 H 1.08993 * 109.47024 * 40.94059 * 4 3 2 32 32 H 1.09003 * 109.47050 * 160.94232 * 4 3 2 33 33 H 0.97000 * 119.99961 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00222 * 245.60326 * 16 13 3 35 35 H 1.09005 * 109.46766 * 44.33461 * 17 16 13 36 36 H 1.08998 * 109.47431 * 284.33602 * 17 16 13 37 37 H 1.08995 * 109.47221 * 60.00499 * 18 17 16 38 38 H 1.08996 * 109.47021 * 300.00440 * 18 17 16 39 39 H 1.08999 * 109.47479 * 183.95775 * 20 19 18 40 40 H 1.09000 * 109.47038 * 303.95810 * 20 19 18 41 41 H 1.09004 * 109.47257 * 63.94820 * 20 19 18 42 42 H 1.09001 * 110.67012 * 303.22947 * 21 19 18 43 43 H 1.09004 * 110.48119 * 37.64365 * 22 21 19 44 44 H 1.09001 * 110.53540 * 274.97538 * 22 21 19 45 45 H 1.09000 * 110.03334 * 217.13542 * 23 22 21 46 46 H 1.09000 * 110.03371 * 95.75115 * 23 22 21 47 47 H 1.08993 * 110.03651 * 119.25847 * 24 23 22 48 48 H 1.09007 * 110.03252 * 240.64083 * 24 23 22 49 49 H 1.08998 * 110.48908 * 142.29211 * 25 24 23 50 50 H 1.09006 * 110.48745 * 264.93134 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2656 5 6 3.4576 1.6681 -1.9327 6 1 4.0623 0.8918 -1.4878 7 6 3.8565 2.2624 -3.1112 8 7 3.1197 3.2075 -3.6533 9 14 5.4424 1.7243 -3.9385 10 1 5.3600 0.2803 -4.2749 11 1 5.6444 2.5119 -5.1812 12 1 6.5840 1.9535 -3.0168 13 16 2.3901 2.1281 1.4305 14 8 1.6491 1.4549 2.4390 15 8 2.2872 3.5252 1.1924 16 7 3.9877 1.8232 1.7419 17 6 5.0229 2.3679 0.8600 18 6 6.3822 2.2853 1.5573 19 7 7.4201 2.8321 0.6731 20 6 7.2243 4.2721 0.4590 21 6 8.7621 2.5564 1.2034 22 6 9.0640 1.0367 1.1823 23 6 10.6046 0.9581 1.1603 24 6 11.1054 2.2919 0.5790 25 6 9.8518 3.1351 0.2671 26 1 -0.3634 0.4335 -0.9317 27 1 -0.3633 -1.0236 0.0904 28 1 -0.3634 0.5902 0.8413 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3341 1.8797 -1.9189 32 1 2.2146 3.1737 -1.0713 33 1 3.4005 3.6259 -4.4822 34 1 4.2381 1.2839 2.5083 35 1 4.7945 3.4090 0.6315 36 1 5.0530 1.7912 -0.0644 37 1 6.6106 1.2443 1.7858 38 1 6.3520 2.8620 2.4817 39 1 7.9635 4.6373 -0.2540 40 1 6.2228 4.4481 0.0662 41 1 7.3410 4.7994 1.4058 42 1 8.8671 2.9565 2.2118 43 1 8.6458 0.5771 0.2867 44 1 8.6704 0.5562 2.0780 45 1 10.9273 0.1307 0.5283 46 1 10.9862 0.8253 2.1726 47 1 11.7293 2.8068 1.3095 48 1 11.6720 2.1118 -0.3346 49 1 10.0321 4.1856 0.4952 50 1 9.5612 3.0149 -0.7766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337067645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:17 Heat of formation + Delta-G solvation = -86.953970 kcal Electronic energy + Delta-G solvation = -28894.057264 eV Core-core repulsion = 25082.421447 eV Total energy + Delta-G solvation = -3811.635817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.06418 -36.67522 -36.21937 -35.94455 -35.17424 -34.00770 -32.66453 -29.89633 -29.28872 -28.48462 -27.33843 -26.58321 -24.60488 -23.11201 -21.73628 -21.45355 -20.19150 -19.89702 -18.75133 -17.11474 -16.79112 -16.44941 -16.34028 -15.90689 -15.41627 -15.17258 -14.64695 -14.41943 -14.25830 -13.85523 -13.60343 -13.33207 -13.25735 -12.99366 -12.83998 -12.17015 -12.08214 -12.00891 -11.87510 -11.73131 -11.63862 -11.54446 -11.41946 -11.33849 -11.28492 -11.00365 -10.99499 -10.89905 -10.84027 -10.68485 -10.58808 -10.50697 -10.44918 -10.32012 -9.97237 -9.76026 -8.87755 -8.45130 -8.20849 -8.02215 -6.07054 -4.13703 1.33962 3.33220 3.37245 3.42174 3.52118 4.00007 4.23739 4.42137 4.44169 4.60376 4.82003 5.04820 5.17822 5.24388 5.27092 5.30671 5.38058 5.45963 5.46831 5.51703 5.55397 5.62405 5.68696 5.72677 5.79955 5.80579 5.83878 5.85045 5.93441 5.97821 6.10488 6.13690 6.19104 6.26495 6.28740 6.35359 6.44053 6.64745 6.70058 6.74919 7.16339 7.23320 7.33788 7.42520 7.49969 7.71770 7.89579 8.19215 8.90354 9.52524 11.00437 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004534 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.380250 B = 6174.615298 C = 7664.534239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.991 5.991 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.264 1.264 13 S 2.788 3.212 14 O -1.002 7.002 15 O -0.982 6.982 16 N -1.131 6.131 17 C 0.116 3.884 18 C 0.052 3.948 19 N -0.528 5.528 20 C 0.018 3.982 21 C 0.079 3.921 22 C -0.117 4.117 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.118 4.118 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.077 0.923 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.022 0.978 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.801 -3.814 9.454 14.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.122 3.878 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.527 5.527 9 Si 0.714 3.286 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 S 2.795 3.205 14 O -0.986 6.986 15 O -0.965 6.965 16 N -0.890 5.890 17 C -0.010 4.010 18 C -0.077 4.077 19 N -0.252 5.252 20 C -0.130 4.130 21 C -0.030 4.030 22 C -0.155 4.155 23 C -0.161 4.161 24 C -0.161 4.161 25 C -0.156 4.156 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.236 0.764 35 H 0.095 0.905 36 H 0.119 0.881 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.040 0.960 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.100 -3.254 9.195 14.041 hybrid contribution 1.345 -0.300 0.255 1.401 sum 11.445 -3.554 9.450 15.262 Atomic orbital electron populations 1.22203 0.97050 1.01270 1.02314 1.20948 0.93513 0.82907 1.02112 1.57705 1.78709 1.23001 1.23868 1.19206 0.97225 0.92462 0.78917 1.21459 1.07170 1.21327 1.07737 0.91793 1.24920 0.97002 0.94675 0.96926 1.69935 1.38080 1.24995 1.19699 0.86719 0.84410 0.78451 0.79039 1.20495 1.21548 1.18868 1.01639 0.72528 0.73669 0.72622 1.93542 1.69856 1.76506 1.58729 1.93569 1.85956 1.31343 1.85656 1.55938 1.25670 1.68315 1.39048 1.21443 0.85238 1.00593 0.93691 1.22266 0.91584 1.00188 0.93708 1.61905 1.01298 1.14836 1.47207 1.22513 1.03744 0.86928 0.99845 1.22650 0.88351 0.96000 0.95993 1.22423 0.95230 0.95408 1.02478 1.22082 0.95696 0.97629 1.00656 1.22081 0.97486 0.95854 1.00645 1.22427 0.93826 0.98561 1.00785 0.92163 0.92438 0.92720 0.90073 0.92066 0.94846 0.92905 0.92619 0.76426 0.90494 0.88104 0.90477 0.94898 0.91226 0.90054 0.95968 0.93768 0.90146 0.92027 0.91767 0.92169 0.92161 0.91776 0.91970 0.90249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 10.24 37.16 0.38 -2.32 16 2 C 0.13 2.29 6.01 -4.04 -0.02 2.27 16 3 N -0.99 -20.14 2.84 -115.66 -0.33 -20.47 16 4 C 0.24 5.92 5.48 -5.19 -0.03 5.89 16 5 C -0.54 -13.49 7.94 -34.44 -0.27 -13.77 16 6 H 0.06 1.55 6.74 -52.49 -0.35 1.20 16 7 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 8 N -0.89 -24.92 13.29 55.43 0.74 -24.19 16 9 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.26 -5.93 7.11 56.52 0.40 -5.53 16 13 S 2.79 54.94 6.11 -107.50 -0.66 54.28 16 14 O -1.00 -20.30 17.09 -57.17 -0.98 -21.27 16 15 O -0.98 -22.78 16.09 -57.17 -0.92 -23.70 16 16 N -1.13 -18.35 6.05 -10.61 -0.06 -18.42 16 17 C 0.12 1.99 6.09 -4.04 -0.02 1.97 16 18 C 0.05 0.72 5.00 -3.82 -0.02 0.70 16 19 N -0.53 -7.52 4.66 -232.45 -1.08 -8.60 16 20 C 0.02 0.25 9.08 60.06 0.55 0.79 16 21 C 0.08 0.93 2.58 -65.68 -0.17 0.76 16 22 C -0.12 -1.28 5.50 -25.03 -0.14 -1.42 16 23 C -0.12 -1.12 6.80 -25.61 -0.17 -1.30 16 24 C -0.12 -1.12 6.80 -25.61 -0.17 -1.30 16 25 C -0.12 -1.28 4.99 -25.07 -0.13 -1.41 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 29 H 0.08 1.41 8.05 -51.93 -0.42 0.99 16 30 H 0.06 0.95 7.64 -51.93 -0.40 0.55 16 31 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.05 1.42 6.83 -51.93 -0.35 1.07 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.40 5.31 8.66 -34.47 -0.30 5.01 16 35 H 0.08 1.46 6.05 -51.93 -0.31 1.15 16 36 H 0.10 1.96 5.59 -51.93 -0.29 1.67 16 37 H 0.08 0.97 6.86 -51.93 -0.36 0.61 16 38 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.07 0.90 6.93 -51.93 -0.36 0.54 16 40 H 0.08 1.28 6.30 -51.93 -0.33 0.95 16 41 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.62 7.76 -51.93 -0.40 0.22 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.06 0.62 7.97 -51.93 -0.41 0.21 16 50 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -30.54 398.44 -11.55 -42.09 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.91 Total: 6.41 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -0.32 Total: -7.44 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -0.74 Total: -71.68 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.90 Total: -44.97 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.66 Total: 54.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.54 -11.55 -42.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337067645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.867 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds