Wall clock time and date at job start Tue Mar 31 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47007 * 2 1 4 4 C 1.46507 * 119.99966 * 274.05988 * 3 2 1 5 5 C 1.50701 * 109.46834 * 280.93815 * 4 3 2 6 6 H 1.07991 * 120.00505 * 3.26854 * 5 4 3 7 7 C 1.37884 * 119.99700 * 183.27106 * 5 4 3 8 8 N 1.31519 * 119.99959 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99813 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47121 * 59.99986 * 9 7 5 11 11 H 1.48503 * 109.47050 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47012 * 299.99787 * 9 7 5 13 13 S 1.65598 * 120.00276 * 94.06120 * 3 2 1 14 14 O 1.42104 * 106.40113 * 336.46188 * 13 3 2 15 15 O 1.42099 * 106.40521 * 203.54033 * 13 3 2 16 16 N 1.65597 * 107.21913 * 89.99775 * 13 3 2 17 17 C 1.46497 * 120.00261 * 65.59905 * 16 13 3 18 18 C 1.52999 * 109.47385 * 164.32858 * 17 16 13 19 19 N 1.46901 * 109.47091 * 180.02562 * 18 17 16 20 20 C 1.46896 * 111.00415 * 66.04716 * 19 18 17 21 21 C 1.46903 * 110.99817 * 190.00418 * 19 18 17 22 22 C 1.54955 * 110.92530 * 66.53752 * 21 19 18 23 23 C 1.54269 * 104.16290 * 156.29539 * 22 21 19 24 24 C 1.53873 * 106.63708 * 336.44816 * 23 22 21 25 25 C 1.54266 * 106.59965 * 359.97271 * 24 23 22 26 26 H 1.08999 * 109.47272 * 65.04744 * 1 2 3 27 27 H 1.08997 * 109.47196 * 185.04937 * 1 2 3 28 28 H 1.09005 * 109.47277 * 305.05235 * 1 2 3 29 29 H 1.09000 * 109.46908 * 240.00366 * 2 1 3 30 30 H 1.08997 * 109.47254 * 120.00173 * 2 1 3 31 31 H 1.08993 * 109.47024 * 40.94059 * 4 3 2 32 32 H 1.09003 * 109.47050 * 160.94232 * 4 3 2 33 33 H 0.97000 * 119.99961 * 179.97438 * 8 7 5 34 34 H 0.96999 * 120.00222 * 245.60326 * 16 13 3 35 35 H 1.09005 * 109.46766 * 44.33461 * 17 16 13 36 36 H 1.08998 * 109.47431 * 284.33602 * 17 16 13 37 37 H 1.08995 * 109.47221 * 60.00499 * 18 17 16 38 38 H 1.08996 * 109.47021 * 300.00440 * 18 17 16 39 39 H 1.08999 * 109.47479 * 183.95775 * 20 19 18 40 40 H 1.09000 * 109.47038 * 303.95810 * 20 19 18 41 41 H 1.09004 * 109.47257 * 63.94820 * 20 19 18 42 42 H 1.09001 * 110.67012 * 303.22947 * 21 19 18 43 43 H 1.09004 * 110.48119 * 37.64365 * 22 21 19 44 44 H 1.09001 * 110.53540 * 274.97538 * 22 21 19 45 45 H 1.09000 * 110.03334 * 217.13542 * 23 22 21 46 46 H 1.09000 * 110.03371 * 95.75115 * 23 22 21 47 47 H 1.08993 * 110.03651 * 119.25847 * 24 23 22 48 48 H 1.09007 * 110.03252 * 240.64083 * 24 23 22 49 49 H 1.08998 * 110.48908 * 142.29211 * 25 24 23 50 50 H 1.09006 * 110.48745 * 264.93134 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1778 2.1018 -1.2656 5 6 3.4576 1.6681 -1.9327 6 1 4.0623 0.8918 -1.4878 7 6 3.8565 2.2624 -3.1112 8 7 3.1197 3.2075 -3.6533 9 14 5.4424 1.7243 -3.9385 10 1 5.3600 0.2803 -4.2749 11 1 5.6444 2.5119 -5.1812 12 1 6.5840 1.9535 -3.0168 13 16 2.3901 2.1281 1.4305 14 8 1.6491 1.4549 2.4390 15 8 2.2872 3.5252 1.1924 16 7 3.9877 1.8232 1.7419 17 6 5.0229 2.3679 0.8600 18 6 6.3822 2.2853 1.5573 19 7 7.4201 2.8321 0.6731 20 6 7.2243 4.2721 0.4590 21 6 8.7621 2.5564 1.2034 22 6 9.0640 1.0367 1.1823 23 6 10.6046 0.9581 1.1603 24 6 11.1054 2.2919 0.5790 25 6 9.8518 3.1351 0.2671 26 1 -0.3634 0.4335 -0.9317 27 1 -0.3633 -1.0236 0.0904 28 1 -0.3634 0.5902 0.8413 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.3341 1.8797 -1.9189 32 1 2.2146 3.1737 -1.0713 33 1 3.4005 3.6259 -4.4822 34 1 4.2381 1.2839 2.5083 35 1 4.7945 3.4090 0.6315 36 1 5.0530 1.7912 -0.0644 37 1 6.6106 1.2443 1.7858 38 1 6.3520 2.8620 2.4817 39 1 7.9635 4.6373 -0.2540 40 1 6.2228 4.4481 0.0662 41 1 7.3410 4.7994 1.4058 42 1 8.8671 2.9565 2.2118 43 1 8.6458 0.5771 0.2867 44 1 8.6704 0.5562 2.0780 45 1 10.9273 0.1307 0.5283 46 1 10.9862 0.8253 2.1726 47 1 11.7293 2.8068 1.3095 48 1 11.6720 2.1118 -0.3346 49 1 10.0321 4.1856 0.4952 50 1 9.5612 3.0149 -0.7766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337067645.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:16 Heat of formation + Delta-G solvation = -108.688999 kcal Electronic energy + Delta-G solvation = -28894.999765 eV Core-core repulsion = 25082.421447 eV Total energy + Delta-G solvation = -3812.578318 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.01595 -38.33034 -37.68489 -37.26881 -36.88645 -35.23762 -34.61968 -31.49301 -30.24699 -29.46378 -28.47051 -28.31179 -25.73884 -24.90240 -23.28648 -22.67714 -20.98543 -20.85312 -20.27771 -18.69773 -18.55332 -18.24166 -17.53771 -17.05387 -16.80454 -16.49346 -16.09272 -15.73519 -15.50516 -15.29637 -14.81042 -14.74137 -14.56046 -14.20025 -14.03034 -13.74886 -13.65704 -13.46648 -13.23032 -13.20390 -13.10058 -13.01401 -12.90809 -12.69258 -12.65155 -12.60276 -12.27505 -12.19422 -12.05296 -11.81848 -11.78284 -11.72127 -11.60346 -11.59383 -11.54469 -11.21818 -10.50561 -10.34490 -9.75869 -9.26323 -8.10703 -6.22810 -0.27321 1.48174 1.52357 1.58456 1.99357 2.48749 2.60033 2.98813 3.22264 3.47258 3.61909 3.80489 3.93257 4.00176 4.08039 4.18220 4.39381 4.41751 4.45832 4.47508 4.54591 4.56091 4.58650 4.63271 4.69928 4.74285 4.75908 4.83387 4.97626 5.01475 5.07878 5.08317 5.11695 5.18570 5.20163 5.24249 5.30817 5.32117 5.37596 5.43692 5.52226 5.57104 5.82574 5.92736 6.07324 6.16851 6.22507 6.27932 6.88166 7.47012 8.97115 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004534 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.380250 B = 6174.615298 C = 7664.534239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.260 3.740 5 C -0.530 4.530 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.928 5.928 9 Si 0.948 3.052 10 H -0.271 1.271 11 H -0.294 1.294 12 H -0.258 1.258 13 S 2.801 3.199 14 O -1.004 7.004 15 O -1.020 7.020 16 N -1.113 6.113 17 C 0.121 3.879 18 C 0.060 3.940 19 N -0.547 5.547 20 C 0.020 3.980 21 C 0.077 3.923 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.120 4.120 25 C -0.119 4.119 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.015 0.985 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.422 0.578 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.036 0.964 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.068 0.932 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.899 -5.659 10.937 17.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.092 0.908 7 C -0.181 4.181 8 N -0.568 5.568 9 Si 0.773 3.227 10 H -0.196 1.196 11 H -0.220 1.220 12 H -0.182 1.182 13 S 2.809 3.191 14 O -0.988 6.988 15 O -1.004 7.004 16 N -0.876 5.876 17 C -0.005 4.005 18 C -0.069 4.069 19 N -0.272 5.272 20 C -0.129 4.129 21 C -0.031 4.031 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.158 4.158 25 C -0.157 4.157 26 H 0.067 0.933 27 H 0.109 0.891 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.033 0.967 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.196 -5.139 10.714 17.028 hybrid contribution 0.655 0.257 -0.152 0.720 sum 12.851 -4.882 10.562 17.336 Atomic orbital electron populations 1.22193 0.96023 1.03153 1.01273 1.21240 0.94511 0.81249 1.03338 1.57612 1.79412 1.24163 1.22455 1.18731 0.96423 0.91021 0.80153 1.21693 1.07110 1.20803 1.07327 0.90782 1.25679 0.99877 0.94757 0.97781 1.70067 1.39961 1.26549 1.20253 0.85745 0.80938 0.78173 0.77812 1.19615 1.22006 1.18184 1.01070 0.73100 0.72715 0.72217 1.93532 1.70480 1.76260 1.58500 1.93525 1.86761 1.33955 1.86113 1.55506 1.24209 1.68358 1.39519 1.21302 0.87152 0.98606 0.93463 1.22179 0.89610 1.01591 0.93547 1.61889 1.02570 1.14747 1.48022 1.22448 1.02333 0.87451 1.00620 1.22750 0.87021 0.96862 0.96474 1.22421 0.96570 0.94537 1.02006 1.22079 0.94285 0.97706 1.01656 1.22080 0.96755 0.95650 1.01266 1.22421 0.94443 0.99418 0.99373 0.93346 0.89073 0.93645 0.90026 0.89573 0.96684 0.96261 0.92799 0.74214 0.92983 0.90335 0.88603 0.93622 0.90558 0.92756 0.94591 0.92787 0.92104 0.90978 0.91421 0.90686 0.90744 0.91463 0.91282 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 10.24 71.98 0.74 -4.41 16 2 C 0.12 4.08 6.01 86.38 0.52 4.60 16 3 N -1.00 -40.61 2.84 -519.84 -1.48 -42.09 16 4 C 0.26 13.03 5.48 85.63 0.47 13.50 16 5 C -0.53 -26.94 7.94 25.60 0.20 -26.73 16 6 H 0.07 3.56 6.74 -2.92 -0.02 3.54 16 7 C 0.02 0.99 5.46 84.66 0.46 1.46 16 8 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16 9 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 10 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 11 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 13 S 2.80 110.08 6.11 -56.49 -0.34 109.74 16 14 O -1.00 -39.35 17.09 -128.00 -2.19 -41.54 16 15 O -1.02 -48.69 16.09 -128.00 -2.06 -50.75 16 16 N -1.11 -34.98 6.05 -187.49 -1.13 -36.11 16 17 C 0.12 4.12 6.09 86.38 0.53 4.65 16 18 C 0.06 1.58 5.00 86.30 0.43 2.01 16 19 N -0.55 -14.96 4.66 -889.34 -4.15 -19.11 16 20 C 0.02 0.54 9.08 127.69 1.16 1.70 16 21 C 0.08 1.65 2.58 46.23 0.12 1.77 16 22 C -0.12 -2.28 5.50 31.69 0.17 -2.10 16 23 C -0.12 -1.84 6.80 31.32 0.21 -1.63 16 24 C -0.12 -1.88 6.80 31.32 0.21 -1.66 16 25 C -0.12 -2.37 4.99 31.67 0.16 -2.21 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.04 1.47 8.11 -2.38 -0.02 1.45 16 29 H 0.08 2.73 8.05 -2.39 -0.02 2.71 16 30 H 0.09 2.45 7.64 -2.39 -0.02 2.44 16 31 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.02 1.10 6.83 -2.39 -0.02 1.08 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.75 16 34 H 0.42 10.13 8.66 -96.75 -0.84 9.29 16 35 H 0.05 2.04 6.05 -2.38 -0.01 2.03 16 36 H 0.08 3.04 5.59 -2.39 -0.01 3.03 16 37 H 0.10 2.15 6.86 -2.39 -0.02 2.14 16 38 H 0.05 1.09 8.12 -2.39 -0.02 1.08 16 39 H 0.08 1.95 6.93 -2.39 -0.02 1.93 16 40 H 0.05 1.78 6.30 -2.39 -0.02 1.76 16 41 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.07 1.23 7.76 -2.39 -0.02 1.21 16 45 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.07 1.26 7.97 -2.39 -0.02 1.24 16 50 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -66.53 398.44 -3.58 -70.11 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.07 Total: 28.00 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: 5.39 Total: -9.07 kcal Atomic # 7 Polarization: -144.13 SS G_CDS: -6.47 Total: -150.60 kcal Atomic # 8 Polarization: -88.04 SS G_CDS: -4.25 Total: -92.29 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Atomic # 16 Polarization: 110.08 SS G_CDS: -0.34 Total: 109.74 kcal Total: -66.53 -3.58 -70.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337067645.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.576 kcal (2) G-P(sol) polarization free energy of solvation -66.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds