Wall clock time and date at job start Tue Mar 31 2020 17:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47344 * 2 1 4 4 C 1.46497 * 119.99871 * 275.78602 * 3 2 1 5 5 C 1.50704 * 109.47030 * 274.99402 * 4 3 2 6 6 H 1.08001 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00245 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47127 * 59.99862 * 9 7 5 11 11 H 1.48496 * 109.47477 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46809 * 299.99957 * 9 7 5 13 13 S 1.65599 * 119.99885 * 95.78257 * 3 2 1 14 14 O 1.42101 * 106.40292 * 149.73480 * 13 3 2 15 15 O 1.42097 * 106.40392 * 16.81785 * 13 3 2 16 16 N 1.65603 * 107.22067 * 263.27243 * 13 3 2 17 17 C 1.46498 * 120.00454 * 276.95695 * 16 13 3 18 18 C 1.46498 * 119.99613 * 96.95133 * 16 13 3 19 19 H 1.08999 * 109.52693 * 316.96470 * 18 16 13 20 20 C 1.53120 * 109.52478 * 77.15663 * 18 16 13 21 21 C 1.53041 * 109.27884 * 62.24520 * 20 18 16 22 22 N 1.46846 * 109.51956 * 59.18258 * 21 20 18 23 23 C 1.46905 * 111.00099 * 174.16417 * 22 21 20 24 24 C 1.46856 * 111.23531 * 298.27524 * 22 21 20 25 25 C 1.53040 * 109.51851 * 61.68341 * 24 22 21 26 26 H 1.08994 * 109.50526 * 60.84178 * 25 24 22 27 27 C 1.52998 * 109.50025 * 180.92170 * 25 24 22 28 28 H 1.09002 * 109.47319 * 184.16220 * 1 2 3 29 29 H 1.08999 * 109.47036 * 304.16385 * 1 2 3 30 30 H 1.08999 * 109.46773 * 64.16262 * 1 2 3 31 31 H 1.08998 * 109.47218 * 239.99584 * 2 1 3 32 32 H 1.09008 * 109.46764 * 119.99975 * 2 1 3 33 33 H 1.09000 * 109.47363 * 35.00102 * 4 3 2 34 34 H 1.09009 * 109.47038 * 154.99955 * 4 3 2 35 35 H 0.97002 * 120.00299 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47002 * 262.61273 * 17 16 13 37 37 H 1.09003 * 109.46959 * 22.60892 * 17 16 13 38 38 H 1.08993 * 109.47371 * 142.61010 * 17 16 13 39 39 H 1.09000 * 109.50625 * 182.18843 * 20 18 16 40 40 H 1.09001 * 109.50035 * 302.27104 * 20 18 16 41 41 H 1.08999 * 109.46244 * 179.19546 * 21 20 18 42 42 H 1.09004 * 109.46651 * 299.18107 * 21 20 18 43 43 H 1.08998 * 109.47145 * 63.94583 * 23 22 21 44 44 H 1.08993 * 109.47281 * 183.95804 * 23 22 21 45 45 H 1.09007 * 109.46345 * 303.95475 * 23 22 21 46 46 H 1.08994 * 109.42792 * 301.69314 * 24 22 21 47 47 H 1.08994 * 109.49493 * 181.71987 * 24 22 21 48 48 H 1.08997 * 109.46812 * 201.93548 * 27 25 24 49 49 H 1.09000 * 109.47061 * 81.93698 * 27 25 24 50 50 H 1.08992 * 109.47084 * 321.93720 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1420 2.1144 -1.2623 5 6 3.4705 1.7974 -1.8993 6 1 4.1541 1.1175 -1.4128 7 6 3.8127 2.3746 -3.1037 8 7 2.9800 3.2023 -3.6964 9 14 5.4590 1.9812 -3.8937 10 1 5.5454 0.5224 -4.1577 11 1 5.5844 2.7245 -5.1732 12 1 6.5564 2.3845 -2.9780 13 16 2.4306 2.1136 1.4268 14 8 3.4590 3.0443 1.1177 15 8 2.5857 1.0730 2.3819 16 7 1.1239 3.0059 1.9154 17 6 0.9082 4.3484 1.3699 18 6 0.1834 2.4527 2.8930 19 1 -0.0258 1.4113 2.6483 20 6 0.7934 2.5377 4.2948 21 6 1.0288 4.0063 4.6552 22 7 -0.2468 4.7326 4.6121 23 6 -0.0828 6.1133 5.0863 24 6 -0.8293 4.7050 3.2643 25 6 -1.1191 3.2572 2.8620 26 1 -1.8327 2.8212 3.5610 27 6 -1.7046 3.2272 1.4488 28 1 -0.3634 -1.0250 0.0746 29 1 -0.3633 0.5771 0.8503 30 1 -0.3633 0.4479 -0.9249 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.3367 1.8186 -1.9347 34 1 2.0784 3.1852 -1.0682 35 1 3.2209 3.6087 -4.5436 36 1 1.2998 5.0904 2.0657 37 1 1.4237 4.4392 0.4138 38 1 -0.1591 4.5143 1.2244 39 1 0.1100 2.0908 5.0168 40 1 1.7424 2.0017 4.3118 41 1 1.4498 4.0711 5.6585 42 1 1.7228 4.4490 3.9407 43 1 0.5823 6.6526 4.4118 44 1 -1.0542 6.6070 5.1106 45 1 0.3455 6.1046 6.0887 46 1 -0.1266 5.1449 2.5566 47 1 -1.7573 5.2766 3.2574 48 1 -2.2597 2.3002 1.3052 49 1 -0.8965 3.2835 0.7195 50 1 -2.3746 4.0764 1.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337086218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:36 Heat of formation + Delta-G solvation = -31.262602 kcal Electronic energy + Delta-G solvation = -30472.784500 eV Core-core repulsion = 26663.563642 eV Total energy + Delta-G solvation = -3809.220858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.32789 -36.68563 -36.06156 -35.71208 -35.13886 -32.70192 -32.64441 -31.88904 -29.97751 -27.75539 -26.91515 -26.59292 -24.91810 -23.14384 -22.51704 -21.66349 -21.60289 -20.13326 -18.14363 -17.28038 -16.83508 -16.28318 -15.94846 -15.57306 -15.40805 -14.99275 -14.71079 -14.48650 -14.30141 -13.87800 -13.53628 -13.47498 -13.28643 -12.91428 -12.64033 -12.45947 -12.25086 -12.21034 -12.10508 -11.98120 -11.78874 -11.69091 -11.60778 -11.43857 -11.32689 -11.24667 -11.14211 -11.00059 -10.91715 -10.68225 -10.49373 -10.47682 -10.28691 -9.98575 -9.88264 -9.76822 -8.78318 -8.43984 -8.21350 -8.04626 -6.07435 -4.10787 1.21827 3.33231 3.36594 3.41341 3.46873 3.86724 4.07958 4.44240 4.54315 4.75045 4.85983 4.96284 5.03474 5.17035 5.25157 5.27357 5.32857 5.37508 5.41313 5.44481 5.47925 5.58054 5.65967 5.66513 5.68292 5.73188 5.75572 5.82398 5.87529 5.89204 5.98981 5.99668 6.03832 6.06300 6.22163 6.29423 6.30423 6.40587 6.61844 6.62330 6.87365 7.01017 7.02894 7.21436 7.41153 7.62550 7.90762 8.20156 8.91315 9.54377 11.00968 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.004266 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.246920 B = 6562.299932 C = 6764.929447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.260 3.740 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.778 3.222 14 O -0.964 6.964 15 O -0.995 6.995 16 N -1.005 6.005 17 C 0.068 3.932 18 C 0.162 3.838 19 H 0.082 0.918 20 C -0.139 4.139 21 C 0.054 3.946 22 N -0.543 5.543 23 C 0.026 3.974 24 C 0.014 3.986 25 C -0.085 4.085 26 H 0.086 0.914 27 C -0.163 4.163 28 H 0.057 0.943 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.039 0.961 43 H 0.024 0.976 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.079 0.921 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 1.499 13.593 17.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.138 3.862 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.788 3.212 14 O -0.947 6.947 15 O -0.979 6.979 16 N -0.844 5.844 17 C -0.077 4.077 18 C 0.056 3.944 19 H 0.100 0.900 20 C -0.178 4.178 21 C -0.073 4.073 22 N -0.267 5.267 23 C -0.123 4.123 24 C -0.112 4.112 25 C -0.105 4.105 26 H 0.104 0.896 27 C -0.221 4.221 28 H 0.076 0.924 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.043 0.957 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.098 0.902 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.879 1.332 14.184 17.926 hybrid contribution 1.036 0.367 -1.239 1.656 sum -9.843 1.699 12.946 16.351 Atomic orbital electron populations 1.22266 0.97247 1.01231 1.02104 1.21128 0.93156 0.83226 1.03355 1.57787 1.80900 1.21328 1.23281 1.19004 0.97411 0.90552 0.79231 1.21457 1.02394 1.27457 1.05290 0.92288 1.24906 0.97252 0.94854 0.96903 1.69901 1.36016 1.30121 1.17594 0.86599 0.84251 0.78429 0.78441 1.20180 1.21189 1.20019 1.02129 0.73432 0.72944 0.72733 1.93628 1.52920 1.63796 1.84390 1.93493 1.85889 1.57289 1.61256 1.58202 1.45154 1.26529 1.54478 1.22328 1.03681 0.83065 0.98589 1.20790 0.88755 0.97158 0.87700 0.89973 1.22174 1.02898 0.96097 0.96651 1.22069 0.90124 0.94412 1.00727 1.61923 1.25773 1.14126 1.24896 1.22320 1.01064 0.88882 0.99990 1.23279 1.00676 0.96981 0.90308 1.21284 0.96074 0.95445 0.97712 0.89591 1.22154 1.01566 1.01940 0.96408 0.92357 0.93213 0.92051 0.89908 0.90601 0.94718 0.95014 0.92683 0.93099 0.90462 0.88685 0.90204 0.89734 0.91065 0.94300 0.95720 0.91603 0.91641 0.90114 0.91241 0.92334 0.90244 0.92420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.35 10.23 37.16 0.38 -1.97 16 2 C 0.12 2.03 6.38 -4.04 -0.03 2.00 16 3 N -0.99 -20.11 2.83 -115.66 -0.33 -20.44 16 4 C 0.26 6.30 5.10 -5.19 -0.03 6.27 16 5 C -0.53 -14.61 9.38 -34.44 -0.32 -14.93 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 9 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 13 S 2.78 54.96 5.89 -107.50 -0.63 54.32 16 14 O -0.96 -23.21 16.55 -57.17 -0.95 -24.15 16 15 O -0.99 -19.99 14.14 -57.17 -0.81 -20.80 16 16 N -1.01 -15.25 2.35 -118.09 -0.28 -15.53 16 17 C 0.07 0.96 6.98 59.85 0.42 1.38 16 18 C 0.16 2.08 2.20 -67.81 -0.15 1.93 16 19 H 0.08 1.05 6.62 -51.93 -0.34 0.70 16 20 C -0.14 -1.77 5.64 -26.65 -0.15 -1.92 16 21 C 0.05 0.67 5.22 -3.83 -0.02 0.65 16 22 N -0.54 -5.99 4.91 -242.95 -1.19 -7.18 16 23 C 0.03 0.24 9.59 60.07 0.58 0.82 16 24 C 0.01 0.15 4.13 -3.83 -0.02 0.14 16 25 C -0.09 -0.90 2.63 -90.54 -0.24 -1.13 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 C -0.16 -1.64 8.34 37.16 0.31 -1.33 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.64 6.67 -51.93 -0.35 0.29 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.47 8.11 -51.93 -0.42 1.05 16 32 H 0.08 1.26 6.85 -51.92 -0.36 0.90 16 33 H 0.03 0.86 8.11 -51.93 -0.42 0.43 16 34 H 0.03 0.81 6.47 -51.92 -0.34 0.47 16 35 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.05 0.68 5.72 -51.93 -0.30 0.39 16 37 H 0.08 1.27 6.40 -51.93 -0.33 0.93 16 38 H 0.10 1.10 3.08 -51.93 -0.16 0.94 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 1.23 6.56 -51.93 -0.34 0.89 16 41 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 42 H 0.04 0.53 6.27 -51.93 -0.33 0.21 16 43 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 46 H 0.08 0.89 2.95 -56.74 -0.17 0.73 16 47 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.94 5.18 -51.93 -0.27 0.67 16 50 H 0.06 0.51 7.95 -51.93 -0.41 0.10 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -31.95 376.47 -10.45 -42.40 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -8.30 Total: 0.36 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: 0.64 Total: -6.44 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -1.06 Total: -68.10 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -1.75 Total: -44.96 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: 54.96 SS G_CDS: -0.63 Total: 54.32 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.95 -10.45 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.138 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds