Wall clock time and date at job start Tue Mar 31 2020 17:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47344 * 2 1 4 4 C 1.46497 * 119.99871 * 275.78602 * 3 2 1 5 5 C 1.50704 * 109.47030 * 274.99402 * 4 3 2 6 6 H 1.08001 * 119.99950 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00008 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00126 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00245 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47127 * 59.99862 * 9 7 5 11 11 H 1.48496 * 109.47477 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46809 * 299.99957 * 9 7 5 13 13 S 1.65599 * 119.99885 * 95.78257 * 3 2 1 14 14 O 1.42101 * 106.40292 * 149.73480 * 13 3 2 15 15 O 1.42097 * 106.40392 * 16.81785 * 13 3 2 16 16 N 1.65603 * 107.22067 * 263.27243 * 13 3 2 17 17 C 1.46498 * 120.00454 * 276.95695 * 16 13 3 18 18 C 1.46498 * 119.99613 * 96.95133 * 16 13 3 19 19 H 1.08999 * 109.52693 * 316.96470 * 18 16 13 20 20 C 1.53120 * 109.52478 * 77.15663 * 18 16 13 21 21 C 1.53041 * 109.27884 * 62.24520 * 20 18 16 22 22 N 1.46846 * 109.51956 * 59.18258 * 21 20 18 23 23 C 1.46905 * 111.00099 * 174.16417 * 22 21 20 24 24 C 1.46856 * 111.23531 * 298.27524 * 22 21 20 25 25 C 1.53040 * 109.51851 * 61.68341 * 24 22 21 26 26 H 1.08994 * 109.50526 * 60.84178 * 25 24 22 27 27 C 1.52998 * 109.50025 * 180.92170 * 25 24 22 28 28 H 1.09002 * 109.47319 * 184.16220 * 1 2 3 29 29 H 1.08999 * 109.47036 * 304.16385 * 1 2 3 30 30 H 1.08999 * 109.46773 * 64.16262 * 1 2 3 31 31 H 1.08998 * 109.47218 * 239.99584 * 2 1 3 32 32 H 1.09008 * 109.46764 * 119.99975 * 2 1 3 33 33 H 1.09000 * 109.47363 * 35.00102 * 4 3 2 34 34 H 1.09009 * 109.47038 * 154.99955 * 4 3 2 35 35 H 0.97002 * 120.00299 * 179.97438 * 8 7 5 36 36 H 1.09001 * 109.47002 * 262.61273 * 17 16 13 37 37 H 1.09003 * 109.46959 * 22.60892 * 17 16 13 38 38 H 1.08993 * 109.47371 * 142.61010 * 17 16 13 39 39 H 1.09000 * 109.50625 * 182.18843 * 20 18 16 40 40 H 1.09001 * 109.50035 * 302.27104 * 20 18 16 41 41 H 1.08999 * 109.46244 * 179.19546 * 21 20 18 42 42 H 1.09004 * 109.46651 * 299.18107 * 21 20 18 43 43 H 1.08998 * 109.47145 * 63.94583 * 23 22 21 44 44 H 1.08993 * 109.47281 * 183.95804 * 23 22 21 45 45 H 1.09007 * 109.46345 * 303.95475 * 23 22 21 46 46 H 1.08994 * 109.42792 * 301.69314 * 24 22 21 47 47 H 1.08994 * 109.49493 * 181.71987 * 24 22 21 48 48 H 1.08997 * 109.46812 * 201.93548 * 27 25 24 49 49 H 1.09000 * 109.47061 * 81.93698 * 27 25 24 50 50 H 1.08992 * 109.47084 * 321.93720 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1420 2.1144 -1.2623 5 6 3.4705 1.7974 -1.8993 6 1 4.1541 1.1175 -1.4128 7 6 3.8127 2.3746 -3.1037 8 7 2.9800 3.2023 -3.6964 9 14 5.4590 1.9812 -3.8937 10 1 5.5454 0.5224 -4.1577 11 1 5.5844 2.7245 -5.1732 12 1 6.5564 2.3845 -2.9780 13 16 2.4306 2.1136 1.4268 14 8 3.4590 3.0443 1.1177 15 8 2.5857 1.0730 2.3819 16 7 1.1239 3.0059 1.9154 17 6 0.9082 4.3484 1.3699 18 6 0.1834 2.4527 2.8930 19 1 -0.0258 1.4113 2.6483 20 6 0.7934 2.5377 4.2948 21 6 1.0288 4.0063 4.6552 22 7 -0.2468 4.7326 4.6121 23 6 -0.0828 6.1133 5.0863 24 6 -0.8293 4.7050 3.2643 25 6 -1.1191 3.2572 2.8620 26 1 -1.8327 2.8212 3.5610 27 6 -1.7046 3.2272 1.4488 28 1 -0.3634 -1.0250 0.0746 29 1 -0.3633 0.5771 0.8503 30 1 -0.3633 0.4479 -0.9249 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 1.3367 1.8186 -1.9347 34 1 2.0784 3.1852 -1.0682 35 1 3.2209 3.6087 -4.5436 36 1 1.2998 5.0904 2.0657 37 1 1.4237 4.4392 0.4138 38 1 -0.1591 4.5143 1.2244 39 1 0.1100 2.0908 5.0168 40 1 1.7424 2.0017 4.3118 41 1 1.4498 4.0711 5.6585 42 1 1.7228 4.4490 3.9407 43 1 0.5823 6.6526 4.4118 44 1 -1.0542 6.6070 5.1106 45 1 0.3455 6.1046 6.0887 46 1 -0.1266 5.1449 2.5566 47 1 -1.7573 5.2766 3.2574 48 1 -2.2597 2.3002 1.3052 49 1 -0.8965 3.2835 0.7195 50 1 -2.3746 4.0764 1.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337086218.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:35 Heat of formation + Delta-G solvation = -54.050715 kcal Electronic energy + Delta-G solvation = -30473.772666 eV Core-core repulsion = 26663.563642 eV Total energy + Delta-G solvation = -3810.209025 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.30251 -38.35202 -37.67804 -36.84754 -36.70766 -34.71456 -33.63179 -32.94816 -31.51754 -28.75518 -28.48966 -27.74051 -25.92471 -24.94836 -23.54171 -23.18606 -22.49552 -21.19320 -19.66412 -18.86104 -18.40784 -18.19167 -17.23449 -16.80557 -16.53443 -16.33206 -16.06432 -15.63443 -15.42113 -15.30999 -14.75401 -14.68027 -14.53153 -14.49797 -13.84397 -13.67730 -13.59489 -13.41844 -13.22934 -13.15751 -13.15021 -13.07101 -13.03869 -12.92713 -12.77990 -12.68353 -12.48434 -12.27994 -12.25301 -12.16055 -12.13856 -11.76815 -11.69591 -11.50854 -11.28375 -10.90307 -10.58503 -9.99353 -9.76140 -9.08824 -8.20575 -6.31388 -0.34461 1.37419 1.40699 1.47693 2.01100 2.38886 2.55204 3.03426 3.10081 3.37938 3.58920 3.79387 3.90346 3.96874 4.10892 4.16831 4.34898 4.41885 4.42911 4.47605 4.49881 4.54883 4.61871 4.64490 4.68547 4.74861 4.76737 4.79419 4.87768 4.95202 4.99152 5.02185 5.04578 5.06055 5.16320 5.17637 5.20632 5.24678 5.34487 5.42846 5.49251 5.54351 5.71087 5.74406 6.00910 6.12582 6.12839 6.19878 6.75725 7.36880 8.86315 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.017460 B = 0.004266 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.246920 B = 6562.299932 C = 6764.929447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.109 3.891 3 N -0.996 5.996 4 C 0.278 3.722 5 C -0.549 4.549 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.950 3.050 10 H -0.265 1.265 11 H -0.275 1.275 12 H -0.280 1.280 13 S 2.788 3.212 14 O -1.014 7.014 15 O -1.001 7.001 16 N -0.992 5.992 17 C 0.070 3.930 18 C 0.154 3.846 19 H 0.086 0.914 20 C -0.139 4.139 21 C 0.055 3.945 22 N -0.543 5.543 23 C 0.024 3.976 24 C 0.012 3.988 25 C -0.076 4.076 26 H 0.103 0.897 27 C -0.162 4.162 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.015 0.985 35 H 0.267 0.733 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.126 0.874 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.365 1.296 14.543 19.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.837 5.837 4 C 0.154 3.846 5 C -0.588 4.588 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.561 5.561 9 Si 0.775 3.225 10 H -0.189 1.189 11 H -0.199 1.199 12 H -0.206 1.206 13 S 2.798 3.202 14 O -0.998 6.998 15 O -0.985 6.985 16 N -0.834 5.834 17 C -0.075 4.075 18 C 0.049 3.951 19 H 0.104 0.896 20 C -0.178 4.178 21 C -0.073 4.073 22 N -0.267 5.267 23 C -0.124 4.124 24 C -0.115 4.115 25 C -0.096 4.096 26 H 0.121 0.879 27 C -0.220 4.220 28 H 0.105 0.895 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.144 0.856 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.035 0.965 43 H 0.037 0.963 44 H 0.100 0.900 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.107 0.893 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.871 1.102 15.141 19.903 hybrid contribution 1.607 0.434 -1.433 2.197 sum -11.264 1.535 13.707 17.808 Atomic orbital electron populations 1.22179 0.94246 1.03239 1.02193 1.21364 0.95716 0.81481 1.03112 1.57688 1.81461 1.22535 1.22029 1.18551 0.95627 0.89966 0.80422 1.21799 1.03720 1.27449 1.05870 0.93528 1.25651 1.00468 0.94761 0.97450 1.69979 1.37449 1.30670 1.17963 0.85734 0.80046 0.78950 0.77752 1.18932 1.19930 1.20615 1.01584 0.73658 0.72519 0.72444 1.93557 1.55979 1.65156 1.85103 1.93473 1.86342 1.57643 1.61046 1.57794 1.44530 1.26370 1.54661 1.22496 1.05271 0.82451 0.97237 1.21106 0.89295 0.97832 0.86882 0.89574 1.22158 1.02191 0.96384 0.97071 1.22030 0.90525 0.94148 1.00598 1.61967 1.24670 1.14983 1.25059 1.22393 1.01922 0.87949 1.00111 1.23315 1.01235 0.97092 0.89884 1.21267 0.94714 0.95115 0.98510 0.87884 1.22131 1.01218 1.03354 0.95280 0.89492 0.92014 0.92878 0.91037 0.89957 0.95339 0.96676 0.92380 0.92492 0.93380 0.85640 0.88256 0.92052 0.90210 0.96486 0.96311 0.90031 0.90988 0.91096 0.89297 0.91349 0.92297 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.17 10.23 71.98 0.74 -3.43 16 2 C 0.11 3.73 6.38 86.38 0.55 4.29 16 3 N -1.00 -41.40 2.83 -519.82 -1.47 -42.86 16 4 C 0.28 13.94 5.10 85.63 0.44 14.37 16 5 C -0.55 -31.33 9.38 25.60 0.24 -31.09 16 6 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 7 C 0.02 0.93 5.46 84.65 0.46 1.39 16 8 N -0.92 -53.46 13.29 21.45 0.28 -53.17 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 10 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 13 S 2.79 113.33 5.89 -56.49 -0.33 112.99 16 14 O -1.01 -51.19 16.55 -128.00 -2.12 -53.31 16 15 O -1.00 -40.69 14.14 -128.00 -1.81 -42.50 16 16 N -0.99 -30.11 2.35 -527.52 -1.24 -31.35 16 17 C 0.07 1.98 6.98 127.77 0.89 2.87 16 18 C 0.15 3.71 2.20 45.07 0.10 3.81 16 19 H 0.09 2.02 6.62 -2.39 -0.02 2.00 16 20 C -0.14 -3.35 5.64 30.65 0.17 -3.18 16 21 C 0.06 1.28 5.22 86.33 0.45 1.73 16 22 N -0.54 -10.67 4.91 -922.56 -4.53 -15.20 16 23 C 0.02 0.40 9.59 127.69 1.22 1.62 16 24 C 0.01 0.21 4.13 86.33 0.36 0.57 16 25 C -0.08 -1.38 2.63 -10.74 -0.03 -1.41 16 26 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 27 C -0.16 -2.80 8.34 71.98 0.60 -2.20 16 28 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.45 6.67 -2.39 -0.02 1.43 16 30 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 32 H 0.08 2.70 6.85 -2.38 -0.02 2.68 16 33 H 0.03 1.45 8.11 -2.39 -0.02 1.43 16 34 H 0.02 0.81 6.47 -2.38 -0.02 0.80 16 35 H 0.27 14.64 8.31 -92.71 -0.77 13.87 16 36 H 0.06 1.55 5.72 -2.39 -0.01 1.54 16 37 H 0.05 1.66 6.40 -2.39 -0.02 1.64 16 38 H 0.13 2.79 3.08 -2.39 -0.01 2.78 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.06 1.77 6.56 -2.39 -0.02 1.76 16 41 H 0.08 1.69 8.09 -2.39 -0.02 1.67 16 42 H 0.02 0.47 6.27 -2.39 -0.01 0.45 16 43 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.08 8.10 -2.38 -0.02 1.06 16 46 H 0.07 1.45 2.95 -6.91 -0.02 1.43 16 47 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 1.29 5.18 -2.39 -0.01 1.27 16 50 H 0.07 1.06 7.95 -2.39 -0.02 1.04 16 Total: -1.00 -69.96 376.47 -2.08 -72.04 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.91 Total: 17.06 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: 6.19 Total: -10.65 kcal Atomic # 7 Polarization: -135.63 SS G_CDS: -6.96 Total: -142.59 kcal Atomic # 8 Polarization: -91.88 SS G_CDS: -3.93 Total: -95.81 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 113.33 SS G_CDS: -0.33 Total: 112.99 kcal Total: -69.96 -2.08 -72.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337086218.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.990 kcal (2) G-P(sol) polarization free energy of solvation -69.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds