Wall clock time and date at job start Tue Mar 31 2020 17:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47056 * 2 1 4 4 C 1.46495 * 120.00046 * 294.04649 * 3 2 1 5 5 C 1.50709 * 109.47305 * 275.00343 * 4 3 2 6 6 H 1.07998 * 119.99679 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99835 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99509 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00295 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47130 * 90.00052 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.00131 * 9 7 5 12 12 H 1.48502 * 109.47285 * 330.00167 * 9 7 5 13 13 S 1.65601 * 119.99912 * 114.05373 * 3 2 1 14 14 O 1.42098 * 106.40363 * 150.46678 * 13 3 2 15 15 O 1.42102 * 106.40374 * 17.53612 * 13 3 2 16 16 N 1.65606 * 107.21491 * 264.00039 * 13 3 2 17 17 C 1.46507 * 120.00076 * 63.96226 * 16 13 3 18 18 C 1.52998 * 109.47191 * 163.12969 * 17 16 13 19 19 H 1.08990 * 109.45317 * 185.99674 * 18 17 16 20 20 C 1.53037 * 109.45800 * 66.02126 * 18 17 16 21 21 C 1.53124 * 109.27731 * 180.80409 * 20 18 17 22 22 C 1.53119 * 109.15820 * 57.65597 * 21 20 18 23 23 C 1.53040 * 109.27861 * 302.34677 * 22 21 20 24 24 N 1.46844 * 109.46146 * 305.97250 * 18 17 16 25 25 C 1.46905 * 111.00336 * 305.84970 * 24 18 17 26 26 C 1.52997 * 109.46944 * 301.42213 * 25 24 18 27 27 H 1.09005 * 109.46862 * 182.58072 * 1 2 3 28 28 H 1.09008 * 109.46900 * 302.57705 * 1 2 3 29 29 H 1.08999 * 109.47225 * 62.57586 * 1 2 3 30 30 H 1.08995 * 109.47111 * 240.00050 * 2 1 3 31 31 H 1.09006 * 109.47229 * 119.99767 * 2 1 3 32 32 H 1.09003 * 109.47009 * 34.99697 * 4 3 2 33 33 H 1.08995 * 109.47185 * 155.00091 * 4 3 2 34 34 H 0.96999 * 119.99803 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00159 * 243.96700 * 16 13 3 36 36 H 1.09002 * 109.46519 * 43.13181 * 17 16 13 37 37 H 1.08999 * 109.47405 * 283.13651 * 17 16 13 38 38 H 1.08996 * 109.50357 * 60.86581 * 20 18 17 39 39 H 1.08998 * 109.54171 * 300.76529 * 20 18 17 40 40 H 1.08999 * 109.52336 * 297.75544 * 21 20 18 41 41 H 1.08998 * 109.52540 * 177.56163 * 21 20 18 42 42 H 1.09005 * 109.50158 * 182.41101 * 22 21 20 43 43 H 1.08992 * 109.54027 * 62.30766 * 22 21 20 44 44 H 1.08999 * 109.46077 * 299.15924 * 23 22 21 45 45 H 1.09003 * 109.45184 * 179.19591 * 23 22 21 46 46 H 1.08990 * 109.47309 * 181.41427 * 25 24 18 47 47 H 1.09006 * 109.46323 * 61.41097 * 25 24 18 48 48 H 1.09006 * 109.47130 * 299.98973 * 26 25 24 49 49 H 1.09002 * 109.47709 * 59.99065 * 26 25 24 50 50 H 1.09004 * 109.46845 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7751 2.2442 -1.1586 5 6 2.8508 2.0165 -2.1893 6 1 3.6372 1.3009 -1.9999 7 6 2.8309 2.7217 -3.3738 8 7 3.7699 2.5234 -4.2730 9 14 1.4703 3.9589 -3.7015 10 1 1.8847 5.2944 -3.2015 11 1 1.2120 4.0355 -5.1619 12 1 0.2326 3.5305 -3.0017 13 16 2.8455 1.9670 1.3096 14 8 3.7389 2.9534 0.8116 15 8 3.2740 0.8344 2.0530 16 7 1.7518 2.7655 2.2630 17 6 0.6508 2.0292 2.8891 18 6 0.0532 2.8692 4.0196 19 1 -0.6931 2.2811 4.5535 20 6 -0.6069 4.1187 3.4322 21 6 -1.1858 4.9662 4.5685 22 6 -0.0651 5.3271 5.5474 23 6 0.5794 4.0426 6.0735 24 7 1.1184 3.2677 4.9486 25 6 1.8657 2.0967 5.4263 26 6 0.9064 1.1280 6.1209 27 1 -0.3633 -1.0267 0.0463 28 1 -0.3633 0.5534 0.8661 29 1 -0.3633 0.4733 -0.9122 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.8026 2.0074 -1.5901 33 1 1.7886 3.2876 -0.8437 34 1 3.7557 3.0193 -5.1065 35 1 1.8401 3.7207 2.4068 36 1 1.0263 1.0894 3.2941 37 1 -0.1180 1.8225 2.1445 38 1 -1.4077 3.8227 2.7546 39 1 0.1354 4.7007 2.8860 40 1 -1.9564 4.3986 5.0902 41 1 -1.6190 5.8785 4.1583 42 1 -0.4789 5.8945 6.3812 43 1 0.6864 5.9281 5.0357 44 1 -0.1695 3.4490 6.5978 45 1 1.3872 4.2966 6.7599 46 1 2.6320 2.4177 6.1318 47 1 2.3372 1.5968 4.5802 48 1 0.4348 1.6279 6.9670 49 1 0.1401 0.8071 5.4153 50 1 1.4609 0.2589 6.4749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337087552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:12 Heat of formation + Delta-G solvation = -77.067844 kcal Electronic energy + Delta-G solvation = -29514.946211 eV Core-core repulsion = 25703.739089 eV Total energy + Delta-G solvation = -3811.207122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.95553 -36.63478 -36.18097 -35.13635 -35.01258 -34.51927 -32.53200 -30.81549 -30.14803 -29.59804 -27.22843 -26.30306 -24.51549 -23.00213 -22.57709 -21.52351 -21.22038 -19.43980 -18.64978 -17.38920 -16.90819 -16.64907 -16.39655 -15.87087 -15.54694 -15.04886 -14.62238 -14.53732 -14.41039 -14.18409 -13.76124 -13.46895 -13.40595 -13.18930 -12.82219 -12.70162 -12.62076 -12.39753 -12.13672 -11.96754 -11.94437 -11.85064 -11.64675 -11.42978 -11.39084 -11.34091 -11.09645 -10.93204 -10.86076 -10.83944 -10.57845 -10.53795 -10.35378 -10.30958 -10.08766 -9.51696 -9.20699 -8.55849 -8.41204 -8.08620 -6.04560 -4.02974 1.24940 3.28516 3.33477 3.35462 3.50832 3.71315 4.18591 4.40831 4.47987 4.53782 4.67650 4.81585 4.93355 5.02347 5.05179 5.07027 5.13954 5.20792 5.26687 5.29062 5.35154 5.39498 5.47158 5.55096 5.56873 5.64551 5.68457 5.72243 5.75150 5.78436 5.82276 5.93238 5.93597 5.99232 6.05463 6.12422 6.20529 6.28281 6.52193 6.56233 6.78817 6.95642 6.96892 7.12191 7.29307 7.53262 7.62511 8.53400 9.01355 9.54705 11.09292 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.004079 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.614141 B = 6862.021331 C = 7518.539160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.116 3.884 3 N -0.987 5.987 4 C 0.230 3.770 5 C -0.528 4.528 6 H 0.077 0.923 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.265 1.265 13 S 2.781 3.219 14 O -0.963 6.963 15 O -0.998 6.998 16 N -1.120 6.120 17 C 0.124 3.876 18 C 0.079 3.921 19 H 0.054 0.946 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.119 4.119 23 C 0.055 3.945 24 N -0.526 5.526 25 C 0.041 3.959 26 C -0.192 4.192 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.034 0.966 33 H 0.026 0.974 34 H 0.264 0.736 35 H 0.417 0.583 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.053 0.947 49 H 0.057 0.943 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.986 0.609 20.843 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.010 4.010 3 N -0.828 5.828 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.095 0.905 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.190 1.190 13 S 2.789 3.211 14 O -0.946 6.946 15 O -0.981 6.981 16 N -0.881 5.881 17 C -0.003 4.003 18 C -0.031 4.031 19 H 0.072 0.928 20 C -0.153 4.153 21 C -0.158 4.158 22 C -0.156 4.156 23 C -0.073 4.073 24 N -0.250 5.250 25 C -0.087 4.087 26 C -0.250 4.250 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.252 0.748 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.051 0.949 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.676 0.668 20.545 23.641 hybrid contribution -1.596 0.607 0.076 1.709 sum -13.272 1.275 20.621 24.556 Atomic orbital electron populations 1.22228 0.96980 1.01320 1.02266 1.21155 0.93584 0.82902 1.03351 1.57504 1.74394 1.19646 1.31263 1.19356 0.97763 0.88323 0.83937 1.21384 1.10679 1.24526 1.00095 0.90457 1.24866 0.95726 0.96500 0.95929 1.69898 1.33352 1.41973 1.08252 0.86933 0.82888 0.82603 0.77739 1.19876 1.21056 1.19000 1.01945 0.73441 0.73195 0.72544 1.93654 1.60876 1.60804 1.79291 1.93512 1.80184 1.52520 1.71890 1.55988 1.44960 1.21385 1.65803 1.21347 0.89730 0.94803 0.94454 1.21823 0.92330 0.95937 0.93012 0.92788 1.21659 1.00033 0.95947 0.97674 1.21571 0.97600 0.99864 0.96737 1.21605 0.98073 0.97045 0.98916 1.22093 0.98226 0.94453 0.92553 1.62065 1.25302 1.21888 1.15782 1.22295 0.96149 0.90034 1.00237 1.22436 1.00969 1.00669 1.00958 0.92244 0.93101 0.91830 0.90367 0.90135 0.94830 0.95657 0.92603 0.74845 0.90687 0.91332 0.91202 0.90584 0.92474 0.91751 0.91841 0.90923 0.94878 0.90867 0.90765 0.89186 0.92832 0.92379 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 9.94 37.16 0.37 -1.87 16 2 C 0.12 1.94 6.58 -4.04 -0.03 1.91 16 3 N -0.99 -19.49 2.92 -115.66 -0.34 -19.82 16 4 C 0.23 5.31 4.06 -5.19 -0.02 5.29 16 5 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 9 Si 0.87 21.05 27.47 -169.99 -4.67 16.38 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 12 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 13 S 2.78 53.52 6.06 -107.50 -0.65 52.87 16 14 O -0.96 -23.06 17.33 -57.17 -0.99 -24.05 16 15 O -1.00 -19.93 16.00 -57.17 -0.91 -20.85 16 16 N -1.12 -15.90 5.54 -10.61 -0.06 -15.96 16 17 C 0.12 1.41 5.07 -4.04 -0.02 1.39 16 18 C 0.08 0.75 1.52 -67.73 -0.10 0.65 16 19 H 0.05 0.48 6.61 -51.93 -0.34 0.13 16 20 C -0.12 -1.05 5.26 -26.65 -0.14 -1.19 16 21 C -0.12 -0.94 6.00 -26.61 -0.16 -1.10 16 22 C -0.12 -0.93 6.09 -26.65 -0.16 -1.09 16 23 C 0.05 0.46 5.04 -3.83 -0.02 0.44 16 24 N -0.53 -5.28 4.33 -226.69 -0.98 -6.26 16 25 C 0.04 0.42 5.52 -3.82 -0.02 0.40 16 26 C -0.19 -1.64 9.12 37.16 0.34 -1.30 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.58 5.94 -51.92 -0.31 0.28 16 29 H 0.06 0.92 7.00 -51.93 -0.36 0.56 16 30 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.08 1.25 6.70 -51.93 -0.35 0.90 16 32 H 0.03 0.74 5.87 -51.93 -0.30 0.43 16 33 H 0.03 0.59 7.20 -51.93 -0.37 0.21 16 34 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 35 H 0.42 5.61 7.37 -34.48 -0.25 5.36 16 36 H 0.07 0.87 5.96 -51.93 -0.31 0.56 16 37 H 0.07 0.72 5.96 -51.93 -0.31 0.41 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.78 6.92 -51.93 -0.36 0.42 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.27 6.74 -51.93 -0.35 -0.09 16 45 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 46 H 0.07 0.72 8.07 -51.93 -0.42 0.31 16 47 H 0.09 1.13 6.33 -51.93 -0.33 0.80 16 48 H 0.05 0.42 6.67 -51.93 -0.35 0.07 16 49 H 0.06 0.49 6.20 -51.93 -0.32 0.17 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 383.11 15.07 5.77 5.77 Total: -1.00 -34.21 383.11 -10.90 -45.11 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -8.43 Total: 3.59 kcal Atomic # 6 Polarization: -9.44 SS G_CDS: -0.41 Total: -9.85 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -0.61 Total: -68.98 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -1.91 Total: -44.89 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Atomic # 16 Polarization: 53.52 SS G_CDS: -0.65 Total: 52.87 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.21 -10.90 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337087552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.961 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds