Wall clock time and date at job start Tue Mar 31 2020 17:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47056 * 2 1 4 4 C 1.46495 * 120.00046 * 294.04649 * 3 2 1 5 5 C 1.50709 * 109.47305 * 275.00343 * 4 3 2 6 6 H 1.07998 * 119.99679 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99835 * 179.97438 * 5 4 3 8 8 N 1.31511 * 119.99509 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00295 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47130 * 90.00052 * 9 7 5 11 11 H 1.48501 * 109.47409 * 210.00131 * 9 7 5 12 12 H 1.48502 * 109.47285 * 330.00167 * 9 7 5 13 13 S 1.65601 * 119.99912 * 114.05373 * 3 2 1 14 14 O 1.42098 * 106.40363 * 150.46678 * 13 3 2 15 15 O 1.42102 * 106.40374 * 17.53612 * 13 3 2 16 16 N 1.65606 * 107.21491 * 264.00039 * 13 3 2 17 17 C 1.46507 * 120.00076 * 63.96226 * 16 13 3 18 18 C 1.52998 * 109.47191 * 163.12969 * 17 16 13 19 19 H 1.08990 * 109.45317 * 185.99674 * 18 17 16 20 20 C 1.53037 * 109.45800 * 66.02126 * 18 17 16 21 21 C 1.53124 * 109.27731 * 180.80409 * 20 18 17 22 22 C 1.53119 * 109.15820 * 57.65597 * 21 20 18 23 23 C 1.53040 * 109.27861 * 302.34677 * 22 21 20 24 24 N 1.46844 * 109.46146 * 305.97250 * 18 17 16 25 25 C 1.46905 * 111.00336 * 305.84970 * 24 18 17 26 26 C 1.52997 * 109.46944 * 301.42213 * 25 24 18 27 27 H 1.09005 * 109.46862 * 182.58072 * 1 2 3 28 28 H 1.09008 * 109.46900 * 302.57705 * 1 2 3 29 29 H 1.08999 * 109.47225 * 62.57586 * 1 2 3 30 30 H 1.08995 * 109.47111 * 240.00050 * 2 1 3 31 31 H 1.09006 * 109.47229 * 119.99767 * 2 1 3 32 32 H 1.09003 * 109.47009 * 34.99697 * 4 3 2 33 33 H 1.08995 * 109.47185 * 155.00091 * 4 3 2 34 34 H 0.96999 * 119.99803 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00159 * 243.96700 * 16 13 3 36 36 H 1.09002 * 109.46519 * 43.13181 * 17 16 13 37 37 H 1.08999 * 109.47405 * 283.13651 * 17 16 13 38 38 H 1.08996 * 109.50357 * 60.86581 * 20 18 17 39 39 H 1.08998 * 109.54171 * 300.76529 * 20 18 17 40 40 H 1.08999 * 109.52336 * 297.75544 * 21 20 18 41 41 H 1.08998 * 109.52540 * 177.56163 * 21 20 18 42 42 H 1.09005 * 109.50158 * 182.41101 * 22 21 20 43 43 H 1.08992 * 109.54027 * 62.30766 * 22 21 20 44 44 H 1.08999 * 109.46077 * 299.15924 * 23 22 21 45 45 H 1.09003 * 109.45184 * 179.19591 * 23 22 21 46 46 H 1.08990 * 109.47309 * 181.41427 * 25 24 18 47 47 H 1.09006 * 109.46323 * 61.41097 * 25 24 18 48 48 H 1.09006 * 109.47130 * 299.98973 * 26 25 24 49 49 H 1.09002 * 109.47709 * 59.99065 * 26 25 24 50 50 H 1.09004 * 109.46845 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 1.7751 2.2442 -1.1586 5 6 2.8508 2.0165 -2.1893 6 1 3.6372 1.3009 -1.9999 7 6 2.8309 2.7217 -3.3738 8 7 3.7699 2.5234 -4.2730 9 14 1.4703 3.9589 -3.7015 10 1 1.8847 5.2944 -3.2015 11 1 1.2120 4.0355 -5.1619 12 1 0.2326 3.5305 -3.0017 13 16 2.8455 1.9670 1.3096 14 8 3.7389 2.9534 0.8116 15 8 3.2740 0.8344 2.0530 16 7 1.7518 2.7655 2.2630 17 6 0.6508 2.0292 2.8891 18 6 0.0532 2.8692 4.0196 19 1 -0.6931 2.2811 4.5535 20 6 -0.6069 4.1187 3.4322 21 6 -1.1858 4.9662 4.5685 22 6 -0.0651 5.3271 5.5474 23 6 0.5794 4.0426 6.0735 24 7 1.1184 3.2677 4.9486 25 6 1.8657 2.0967 5.4263 26 6 0.9064 1.1280 6.1209 27 1 -0.3633 -1.0267 0.0463 28 1 -0.3633 0.5534 0.8661 29 1 -0.3633 0.4733 -0.9122 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.8026 2.0074 -1.5901 33 1 1.7886 3.2876 -0.8437 34 1 3.7557 3.0193 -5.1065 35 1 1.8401 3.7207 2.4068 36 1 1.0263 1.0894 3.2941 37 1 -0.1180 1.8225 2.1445 38 1 -1.4077 3.8227 2.7546 39 1 0.1354 4.7007 2.8860 40 1 -1.9564 4.3986 5.0902 41 1 -1.6190 5.8785 4.1583 42 1 -0.4789 5.8945 6.3812 43 1 0.6864 5.9281 5.0357 44 1 -0.1695 3.4490 6.5978 45 1 1.3872 4.2966 6.7599 46 1 2.6320 2.4177 6.1318 47 1 2.3372 1.5968 4.5802 48 1 0.4348 1.6279 6.9670 49 1 0.1401 0.8071 5.4153 50 1 1.4609 0.2589 6.4749 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337087552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:11 Heat of formation + Delta-G solvation = -103.790624 kcal Electronic energy + Delta-G solvation = -29516.104998 eV Core-core repulsion = 25703.739089 eV Total energy + Delta-G solvation = -3812.365909 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.69515 -38.27354 -37.76841 -36.81889 -36.00624 -35.21980 -34.63597 -31.70596 -31.63442 -30.28699 -29.02883 -27.14279 -25.22187 -24.72613 -23.31814 -22.95802 -22.07343 -20.44185 -19.83288 -19.15934 -18.66684 -18.25570 -17.47110 -16.89645 -16.63000 -16.27704 -16.04345 -15.55844 -15.38570 -15.08751 -15.02416 -14.75420 -14.59516 -14.13515 -14.06197 -13.93103 -13.76491 -13.56765 -13.45444 -13.35030 -13.11953 -13.03470 -12.88151 -12.67788 -12.64525 -12.60997 -12.46994 -12.27014 -12.16549 -12.09212 -11.69196 -11.60258 -11.56504 -11.52388 -11.22129 -11.02847 -10.75533 -10.34097 -9.75797 -9.11972 -8.26264 -6.31384 -0.28792 1.37668 1.42201 1.50387 2.09337 2.37496 2.66572 3.01176 3.07747 3.47924 3.73998 3.83192 3.96916 4.03082 4.13423 4.26814 4.35179 4.38978 4.40228 4.42845 4.48062 4.55220 4.57173 4.62820 4.68216 4.74968 4.86790 4.87956 4.92189 4.93908 4.99989 5.05749 5.08275 5.13901 5.16147 5.21981 5.31230 5.32895 5.36633 5.43683 5.51996 5.55535 5.56599 5.81275 6.17993 6.25671 6.29266 6.36991 6.71464 7.31050 8.91793 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.004079 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.614141 B = 6862.021331 C = 7518.539160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.992 5.992 4 C 0.239 3.761 5 C -0.540 4.540 6 H 0.024 0.976 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.945 3.055 10 H -0.270 1.270 11 H -0.281 1.281 12 H -0.225 1.225 13 S 2.794 3.206 14 O -1.017 7.017 15 O -1.010 7.010 16 N -1.102 6.102 17 C 0.116 3.884 18 C 0.084 3.916 19 H 0.072 0.928 20 C -0.117 4.117 21 C -0.116 4.116 22 C -0.117 4.117 23 C 0.055 3.945 24 N -0.541 5.541 25 C 0.040 3.960 26 C -0.185 4.185 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.032 0.968 34 H 0.266 0.734 35 H 0.422 0.578 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.061 0.939 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.979 1.343 22.718 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.833 5.833 4 C 0.114 3.886 5 C -0.579 4.579 6 H 0.042 0.958 7 C -0.193 4.193 8 N -0.592 5.592 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.206 1.206 12 H -0.148 1.148 13 S 2.803 3.197 14 O -1.001 7.001 15 O -0.993 6.993 16 N -0.867 5.867 17 C -0.010 4.010 18 C -0.026 4.026 19 H 0.090 0.910 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.266 5.266 25 C -0.088 4.088 26 C -0.244 4.244 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.259 0.741 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.092 0.908 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.681 1.370 22.452 27.420 hybrid contribution -0.245 0.283 -0.415 0.558 sum -15.926 1.653 22.038 27.240 Atomic orbital electron populations 1.22166 0.93538 1.03437 1.02768 1.21385 0.96460 0.81163 1.02789 1.57432 1.74594 1.20686 1.30590 1.19123 0.96621 0.89232 0.83635 1.21731 1.10918 1.23300 1.01973 0.95783 1.25960 0.98867 0.98993 0.95463 1.70085 1.36181 1.43831 1.09108 0.85773 0.80445 0.79053 0.78105 1.19527 1.20624 1.14781 1.01269 0.73426 0.72460 0.72576 1.93576 1.63629 1.62389 1.80521 1.93487 1.80786 1.53085 1.71952 1.55485 1.45061 1.21532 1.64594 1.21668 0.88976 0.94860 0.95530 1.21816 0.92323 0.96166 0.92290 0.91042 1.21689 0.99929 0.95646 0.98232 1.21549 0.97607 0.99981 0.96253 1.21602 0.97825 0.96691 0.99382 1.22124 0.98479 0.94537 0.92058 1.62053 1.25889 1.21942 1.16707 1.22220 0.96706 0.90540 0.99357 1.22366 1.00578 1.00259 1.01155 0.89554 0.90881 0.92753 0.92675 0.89113 0.92387 0.95052 0.92467 0.74100 0.90820 0.89544 0.90172 0.92081 0.91406 0.91290 0.90377 0.92316 0.93891 0.90880 0.90817 0.91775 0.91751 0.92033 0.91892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 9.94 71.98 0.72 -3.04 16 2 C 0.11 3.50 6.58 86.38 0.57 4.07 16 3 N -0.99 -38.95 2.92 -519.83 -1.52 -40.47 16 4 C 0.24 10.86 4.06 85.64 0.35 11.21 16 5 C -0.54 -31.76 9.94 25.60 0.25 -31.51 16 6 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 7 C 0.00 0.26 5.47 84.65 0.46 0.72 16 8 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 9 Si 0.94 42.81 27.47 68.60 1.88 44.70 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.23 -8.71 6.54 99.48 0.65 -8.06 16 13 S 2.79 108.49 6.06 -56.49 -0.34 108.15 16 14 O -1.02 -50.39 17.33 -128.00 -2.22 -52.61 16 15 O -1.01 -40.79 16.00 -128.00 -2.05 -42.84 16 16 N -1.10 -30.02 5.54 -187.48 -1.04 -31.06 16 17 C 0.12 2.35 5.07 86.38 0.44 2.79 16 18 C 0.08 1.37 1.52 44.94 0.07 1.43 16 19 H 0.07 0.97 6.61 -2.39 -0.02 0.95 16 20 C -0.12 -1.77 5.26 30.65 0.16 -1.61 16 21 C -0.12 -1.44 6.00 30.68 0.18 -1.26 16 22 C -0.12 -1.54 6.09 30.65 0.19 -1.35 16 23 C 0.06 0.79 5.04 86.33 0.44 1.23 16 24 N -0.54 -9.81 4.33 -871.13 -3.78 -13.59 16 25 C 0.04 0.77 5.52 86.30 0.48 1.24 16 26 C -0.18 -2.74 9.12 71.98 0.66 -2.08 16 27 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.07 1.37 5.94 -2.38 -0.01 1.36 16 29 H 0.05 1.39 7.00 -2.39 -0.02 1.37 16 30 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 2.74 6.70 -2.38 -0.02 2.73 16 32 H 0.06 2.38 5.87 -2.39 -0.01 2.37 16 33 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 34 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 35 H 0.42 10.98 7.37 -96.74 -0.71 10.27 16 36 H 0.07 1.55 5.96 -2.39 -0.01 1.54 16 37 H 0.09 1.47 5.96 -2.39 -0.01 1.45 16 38 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.12 6.92 -2.39 -0.02 1.10 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 0.54 6.74 -2.39 -0.02 0.53 16 45 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 46 H 0.07 1.39 8.07 -2.39 -0.02 1.37 16 47 H 0.06 1.57 6.33 -2.38 -0.02 1.56 16 48 H 0.06 0.82 6.67 -2.38 -0.02 0.80 16 49 H 0.06 0.86 6.20 -2.39 -0.01 0.85 16 50 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -78.18 383.11 -3.64 -81.82 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 0.16 Total: 24.86 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 4.96 Total: -18.16 kcal Atomic # 7 Polarization: -139.88 SS G_CDS: -6.03 Total: -145.92 kcal Atomic # 8 Polarization: -91.18 SS G_CDS: -4.27 Total: -95.45 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 108.49 SS G_CDS: -0.34 Total: 108.15 kcal Total: -78.18 -3.64 -81.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337087552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.970 kcal (2) G-P(sol) polarization free energy of solvation -78.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds