Wall clock time and date at job start Tue Mar 31 2020 17:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47313 * 2 1 4 4 C 1.46892 * 110.99972 * 66.04082 * 3 2 1 5 5 C 1.53005 * 109.47288 * 61.45691 * 4 3 2 6 6 C 1.46897 * 110.99951 * 189.99908 * 3 2 1 7 7 H 1.09001 * 110.64168 * 299.54276 * 6 3 2 8 8 C 1.55165 * 110.72290 * 62.88292 * 6 3 2 9 9 C 1.54904 * 101.58224 * 153.86381 * 8 6 3 10 10 N 1.47425 * 104.83184 * 322.98989 * 9 8 6 11 11 S 1.65606 * 125.64528 * 204.08971 * 10 9 8 12 12 O 1.42098 * 106.40030 * 23.58614 * 11 10 9 13 13 O 1.42100 * 106.39839 * 156.50197 * 11 10 9 14 14 N 1.65595 * 107.22068 * 270.04489 * 11 10 9 15 15 C 1.46492 * 120.00421 * 90.00039 * 14 11 10 16 16 C 1.53004 * 109.47291 * 94.99878 * 15 14 11 17 17 C 1.46507 * 119.99688 * 269.99880 * 14 11 10 18 18 C 1.50702 * 109.46741 * 95.00194 * 17 14 11 19 19 H 1.08003 * 120.00576 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99773 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47335 * 120.00213 * 22 20 18 25 25 H 1.48500 * 109.47085 * 240.00439 * 22 20 18 26 26 C 1.47018 * 108.70649 * 24.13259 * 10 9 8 27 27 H 1.09001 * 109.46958 * 60.00259 * 1 2 3 28 28 H 1.08999 * 109.47231 * 300.00411 * 1 2 3 29 29 H 1.08997 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46958 * 119.99741 * 2 1 3 31 31 H 1.08999 * 109.47231 * 239.99589 * 2 1 3 32 32 H 1.09000 * 109.46934 * 181.45150 * 4 3 2 33 33 H 1.09000 * 109.47498 * 301.45346 * 4 3 2 34 34 H 1.08996 * 109.46982 * 56.51479 * 5 4 3 35 35 H 1.08999 * 109.47329 * 176.52190 * 5 4 3 36 36 H 1.09001 * 109.46430 * 296.52333 * 5 4 3 37 37 H 1.08998 * 110.99852 * 271.93977 * 8 6 3 38 38 H 1.09002 * 111.00000 * 35.78567 * 8 6 3 39 39 H 1.08999 * 110.36773 * 204.15121 * 9 8 6 40 40 H 1.09007 * 110.45873 * 81.87649 * 9 8 6 41 41 H 1.08995 * 109.47713 * 215.00428 * 15 14 11 42 42 H 1.08999 * 109.47120 * 335.00331 * 15 14 11 43 43 H 1.08995 * 109.46897 * 59.99727 * 16 15 14 44 44 H 1.09000 * 109.47393 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46596 * 300.00330 * 16 15 14 46 46 H 1.08999 * 109.47001 * 214.99429 * 17 14 11 47 47 H 1.08994 * 109.47392 * 335.00575 * 17 14 11 48 48 H 0.97000 * 120.00226 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.87909 * 239.52531 * 26 10 9 50 50 H 1.09000 * 110.01498 * 118.42914 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0670 1.2532 5 6 2.3314 1.3445 2.4287 6 6 3.4685 1.4311 -0.2381 7 1 4.0035 0.8899 0.5422 8 6 3.8128 0.8630 -1.6404 9 6 5.1413 1.5949 -1.9548 10 7 4.9683 2.9479 -1.3957 11 16 5.7755 4.3069 -1.8899 12 8 6.1955 4.0609 -3.2249 13 8 4.9622 5.4126 -1.5223 14 7 7.1539 4.4168 -0.9787 15 6 8.3896 3.7794 -1.4399 16 6 9.2421 4.8036 -2.1917 17 6 7.1375 5.1517 0.2886 18 6 6.8946 4.1904 1.4235 19 1 6.7658 3.1373 1.2211 20 6 6.8379 4.6551 2.7204 21 7 6.9953 5.9372 2.9669 22 14 6.5375 3.4634 4.1272 23 1 6.3950 2.0870 3.5882 24 1 7.6851 3.5095 5.0686 25 1 5.2941 3.8463 4.8432 26 6 3.9612 2.8909 -0.3261 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.0219 3.0979 1.2161 33 1 0.5879 2.0568 1.3828 34 1 3.4087 1.3005 2.2685 35 1 2.1231 1.8857 3.3515 36 1 1.9336 0.3324 2.5032 37 1 3.9614 -0.2160 -1.5990 38 1 3.0424 1.1222 -2.3667 39 1 5.3000 1.6469 -3.0319 40 1 5.9781 1.0893 -1.4728 41 1 8.9465 3.4030 -0.5818 42 1 8.1450 2.9517 -2.1056 43 1 9.4867 5.6313 -1.5261 44 1 10.1614 4.3292 -2.5352 45 1 8.6851 5.1799 -3.0498 46 1 8.0968 5.6489 0.4327 47 1 6.3419 5.8963 0.2666 48 1 6.9550 6.2642 3.8793 49 1 3.1270 3.5498 -0.5671 50 1 4.4072 3.1895 0.6225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337089952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:41 Heat of formation + Delta-G solvation = -70.363074 kcal Electronic energy + Delta-G solvation = -29673.530497 eV Core-core repulsion = 25862.614115 eV Total energy + Delta-G solvation = -3810.916382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.39613 -36.65788 -36.52172 -35.99819 -35.17074 -32.73252 -31.51642 -30.78905 -29.92921 -28.97039 -27.03962 -26.58361 -24.14587 -23.13238 -21.97188 -21.60359 -21.54540 -19.24034 -18.42466 -17.27595 -16.99430 -16.51248 -16.30637 -15.56122 -15.43133 -15.04338 -14.62219 -14.23326 -13.87729 -13.83571 -13.44206 -13.17921 -13.07323 -12.94612 -12.64401 -12.60681 -12.24038 -12.07890 -12.06680 -11.95736 -11.80080 -11.67862 -11.53237 -11.34946 -11.31605 -11.20831 -11.08894 -11.04436 -10.96755 -10.75213 -10.59076 -10.50930 -10.44449 -10.39052 -10.05440 -9.76569 -8.58766 -8.50843 -8.27244 -8.04469 -6.13437 -4.19510 1.26521 3.19192 3.27630 3.29027 3.49161 3.90349 4.16332 4.32670 4.51545 4.77041 4.90264 5.04100 5.14178 5.18828 5.20871 5.26778 5.31196 5.41060 5.43496 5.46354 5.52888 5.60021 5.65986 5.75467 5.78339 5.83083 5.85169 5.89300 5.95963 6.01686 6.08841 6.10335 6.14224 6.22026 6.25424 6.33843 6.35307 6.53258 6.65448 6.67390 6.83207 7.09909 7.15334 7.36007 7.45389 7.67004 7.84378 8.14482 8.85582 9.45926 10.94658 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.005929 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.940010 B = 4721.692968 C = 6764.253439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 N -0.526 5.526 4 C 0.042 3.958 5 C -0.195 4.195 6 C 0.071 3.929 7 H 0.061 0.939 8 C -0.119 4.119 9 C 0.120 3.880 10 N -1.013 6.013 11 S 2.799 3.201 12 O -0.996 6.996 13 O -0.974 6.974 14 N -0.992 5.992 15 C 0.131 3.869 16 C -0.170 4.170 17 C 0.245 3.755 18 C -0.536 4.536 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.889 3.111 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.282 1.282 26 C 0.130 3.870 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.038 0.962 47 H 0.050 0.950 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 -12.185 -5.786 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 N -0.251 5.251 4 C -0.086 4.086 5 C -0.253 4.253 6 C -0.039 4.039 7 H 0.079 0.921 8 C -0.158 4.158 9 C -0.006 4.006 10 N -0.852 5.852 11 S 2.809 3.191 12 O -0.980 6.980 13 O -0.958 6.958 14 N -0.833 5.833 15 C 0.004 3.996 16 C -0.229 4.229 17 C 0.123 3.877 18 C -0.576 4.576 19 H 0.081 0.919 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.208 1.208 26 C 0.004 3.996 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.068 0.932 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.263 -11.089 -6.726 14.865 hybrid contribution 0.501 -1.318 2.099 2.529 sum -6.762 -12.407 -4.627 14.869 Atomic orbital electron populations 1.21778 0.95063 1.01158 1.02498 1.22111 0.95884 0.89404 1.00886 1.62337 1.12785 1.15654 1.34281 1.22265 1.00555 0.98990 0.86788 1.22430 1.02003 1.00938 0.99966 1.22704 0.87725 0.96539 0.96918 0.92147 1.22809 0.97257 0.99057 0.96709 1.21899 0.97446 0.82490 0.98794 1.59021 1.54504 1.22899 1.48770 1.01336 0.72796 0.72276 0.72667 1.93525 1.82869 1.86195 1.35416 1.93569 1.68269 1.49677 1.84329 1.57823 1.22337 1.66194 1.36946 1.20959 0.86206 0.94273 0.98153 1.22207 0.99567 1.00497 1.00625 1.19191 0.99296 0.91599 0.77662 1.21577 1.50068 0.94598 0.91316 0.91949 1.24937 0.95127 0.95027 0.98690 1.69937 1.49274 1.12843 1.20565 0.86600 0.78035 0.81233 0.82499 1.19750 1.20968 1.20799 1.21677 0.90914 0.95775 0.91260 0.91908 0.92673 0.92671 0.94517 0.90803 0.89819 0.90464 0.91986 0.91934 0.92751 0.90744 0.89737 0.90323 0.91958 0.90311 0.92055 0.92071 0.92353 0.92657 0.94403 0.93199 0.92653 0.90789 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.84 37.16 0.37 -0.92 16 2 C 0.04 0.45 5.34 -3.82 -0.02 0.43 16 3 N -0.53 -6.47 4.54 -224.45 -1.02 -7.49 16 4 C 0.04 0.52 5.59 -3.83 -0.02 0.49 16 5 C -0.19 -2.40 9.24 37.16 0.34 -2.06 16 6 C 0.07 0.96 2.17 -65.87 -0.14 0.82 16 7 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 8 C -0.12 -1.40 5.49 -24.58 -0.13 -1.54 16 9 C 0.12 1.66 7.10 -2.53 -0.02 1.64 16 10 N -1.01 -17.77 3.76 -111.42 -0.42 -18.19 16 11 S 2.80 57.77 6.31 -107.50 -0.68 57.09 16 12 O -1.00 -20.77 16.43 -57.17 -0.94 -21.71 16 13 O -0.97 -23.40 16.27 -57.17 -0.93 -24.33 16 14 N -0.99 -20.71 2.82 -115.67 -0.33 -21.04 16 15 C 0.13 2.30 6.06 -4.04 -0.02 2.27 16 16 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 17 C 0.24 6.05 5.44 -5.19 -0.03 6.02 16 18 C -0.54 -13.75 8.94 -34.44 -0.31 -14.06 16 19 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 22 Si 0.89 20.28 29.54 -169.99 -5.02 15.26 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 C 0.13 2.22 5.51 -3.06 -0.02 2.20 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.49 6.52 -51.93 -0.34 0.15 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.04 0.37 6.12 -51.93 -0.32 0.05 16 31 H 0.07 0.69 6.77 -51.93 -0.35 0.34 16 32 H 0.08 1.16 6.78 -51.93 -0.35 0.81 16 33 H 0.08 0.84 6.41 -51.93 -0.33 0.51 16 34 H 0.06 0.87 6.38 -51.93 -0.33 0.54 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.59 6.49 -51.93 -0.34 0.25 16 37 H 0.07 0.70 7.87 -51.93 -0.41 0.30 16 38 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.04 7.78 -51.93 -0.40 0.64 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 42 H 0.06 0.96 7.61 -51.93 -0.40 0.57 16 43 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.04 0.97 8.11 -51.93 -0.42 0.55 16 47 H 0.05 1.37 6.91 -51.93 -0.36 1.01 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.07 1.30 7.55 -51.93 -0.39 0.91 16 50 H 0.08 1.61 7.69 -51.93 -0.40 1.21 16 LS Contribution 395.59 15.07 5.96 5.96 Total: -1.00 -30.74 395.59 -11.19 -41.92 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -8.83 Total: 2.26 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 0.28 Total: -5.40 kcal Atomic # 7 Polarization: -70.03 SS G_CDS: -1.03 Total: -71.05 kcal Atomic # 8 Polarization: -44.17 SS G_CDS: -1.87 Total: -46.04 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -0.68 Total: 57.09 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.74 -11.19 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337089952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.440 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds