Wall clock time and date at job start Tue Mar 31 2020 17:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46904 * 109.47313 * 2 1 4 4 C 1.46892 * 110.99972 * 66.04082 * 3 2 1 5 5 C 1.53005 * 109.47288 * 61.45691 * 4 3 2 6 6 C 1.46897 * 110.99951 * 189.99908 * 3 2 1 7 7 H 1.09001 * 110.64168 * 299.54276 * 6 3 2 8 8 C 1.55165 * 110.72290 * 62.88292 * 6 3 2 9 9 C 1.54904 * 101.58224 * 153.86381 * 8 6 3 10 10 N 1.47425 * 104.83184 * 322.98989 * 9 8 6 11 11 S 1.65606 * 125.64528 * 204.08971 * 10 9 8 12 12 O 1.42098 * 106.40030 * 23.58614 * 11 10 9 13 13 O 1.42100 * 106.39839 * 156.50197 * 11 10 9 14 14 N 1.65595 * 107.22068 * 270.04489 * 11 10 9 15 15 C 1.46492 * 120.00421 * 90.00039 * 14 11 10 16 16 C 1.53004 * 109.47291 * 94.99878 * 15 14 11 17 17 C 1.46507 * 119.99688 * 269.99880 * 14 11 10 18 18 C 1.50702 * 109.46741 * 95.00194 * 17 14 11 19 19 H 1.08003 * 120.00576 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99773 * 179.97438 * 18 17 14 21 21 N 1.31509 * 120.00199 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99837 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47327 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47335 * 120.00213 * 22 20 18 25 25 H 1.48500 * 109.47085 * 240.00439 * 22 20 18 26 26 C 1.47018 * 108.70649 * 24.13259 * 10 9 8 27 27 H 1.09001 * 109.46958 * 60.00259 * 1 2 3 28 28 H 1.08999 * 109.47231 * 300.00411 * 1 2 3 29 29 H 1.08997 * 109.47379 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46958 * 119.99741 * 2 1 3 31 31 H 1.08999 * 109.47231 * 239.99589 * 2 1 3 32 32 H 1.09000 * 109.46934 * 181.45150 * 4 3 2 33 33 H 1.09000 * 109.47498 * 301.45346 * 4 3 2 34 34 H 1.08996 * 109.46982 * 56.51479 * 5 4 3 35 35 H 1.08999 * 109.47329 * 176.52190 * 5 4 3 36 36 H 1.09001 * 109.46430 * 296.52333 * 5 4 3 37 37 H 1.08998 * 110.99852 * 271.93977 * 8 6 3 38 38 H 1.09002 * 111.00000 * 35.78567 * 8 6 3 39 39 H 1.08999 * 110.36773 * 204.15121 * 9 8 6 40 40 H 1.09007 * 110.45873 * 81.87649 * 9 8 6 41 41 H 1.08995 * 109.47713 * 215.00428 * 15 14 11 42 42 H 1.08999 * 109.47120 * 335.00331 * 15 14 11 43 43 H 1.08995 * 109.46897 * 59.99727 * 16 15 14 44 44 H 1.09000 * 109.47393 * 180.02562 * 16 15 14 45 45 H 1.09004 * 109.46596 * 300.00330 * 16 15 14 46 46 H 1.08999 * 109.47001 * 214.99429 * 17 14 11 47 47 H 1.08994 * 109.47392 * 335.00575 * 17 14 11 48 48 H 0.97000 * 120.00226 * 179.97438 * 21 20 18 49 49 H 1.09001 * 109.87909 * 239.52531 * 26 10 9 50 50 H 1.09000 * 110.01498 * 118.42914 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0670 1.2532 5 6 2.3314 1.3445 2.4287 6 6 3.4685 1.4311 -0.2381 7 1 4.0035 0.8899 0.5422 8 6 3.8128 0.8630 -1.6404 9 6 5.1413 1.5949 -1.9548 10 7 4.9683 2.9479 -1.3957 11 16 5.7755 4.3069 -1.8899 12 8 6.1955 4.0609 -3.2249 13 8 4.9622 5.4126 -1.5223 14 7 7.1539 4.4168 -0.9787 15 6 8.3896 3.7794 -1.4399 16 6 9.2421 4.8036 -2.1917 17 6 7.1375 5.1517 0.2886 18 6 6.8946 4.1904 1.4235 19 1 6.7658 3.1373 1.2211 20 6 6.8379 4.6551 2.7204 21 7 6.9953 5.9372 2.9669 22 14 6.5375 3.4634 4.1272 23 1 6.3950 2.0870 3.5882 24 1 7.6851 3.5095 5.0686 25 1 5.2941 3.8463 4.8432 26 6 3.9612 2.8909 -0.3261 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 2.0219 3.0979 1.2161 33 1 0.5879 2.0568 1.3828 34 1 3.4087 1.3005 2.2685 35 1 2.1231 1.8857 3.3515 36 1 1.9336 0.3324 2.5032 37 1 3.9614 -0.2160 -1.5990 38 1 3.0424 1.1222 -2.3667 39 1 5.3000 1.6469 -3.0319 40 1 5.9781 1.0893 -1.4728 41 1 8.9465 3.4030 -0.5818 42 1 8.1450 2.9517 -2.1056 43 1 9.4867 5.6313 -1.5261 44 1 10.1614 4.3292 -2.5352 45 1 8.6851 5.1799 -3.0498 46 1 8.0968 5.6489 0.4327 47 1 6.3419 5.8963 0.2666 48 1 6.9550 6.2642 3.8793 49 1 3.1270 3.5498 -0.5671 50 1 4.4072 3.1895 0.6225 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337089952.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:40 Heat of formation + Delta-G solvation = -91.844084 kcal Electronic energy + Delta-G solvation = -29674.461983 eV Core-core repulsion = 25862.614115 eV Total energy + Delta-G solvation = -3811.847868 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46329 -38.37067 -37.68947 -37.64410 -36.92671 -34.71137 -32.35824 -31.91977 -31.54288 -30.08075 -28.53789 -28.05300 -25.11108 -24.94764 -23.37066 -22.90808 -22.58721 -20.25683 -19.94357 -18.81280 -18.74036 -18.20544 -17.70638 -17.12407 -16.44621 -16.41564 -16.16096 -15.59900 -15.12824 -14.96737 -14.88558 -14.64087 -14.53073 -13.94909 -13.87693 -13.82461 -13.76540 -13.64871 -13.38424 -13.24250 -13.17257 -13.09002 -13.03819 -12.79297 -12.70165 -12.64707 -12.52327 -12.29975 -12.20353 -12.12429 -12.10654 -11.79991 -11.74309 -11.63467 -11.57467 -11.33869 -10.60800 -9.98722 -9.77610 -9.22349 -8.18418 -6.31585 -0.37186 1.37951 1.39453 1.50248 1.95030 2.39243 2.54236 2.92060 3.13415 3.22494 3.60119 3.73697 3.95531 4.02639 4.19755 4.26559 4.32842 4.37957 4.40674 4.41779 4.45570 4.54054 4.58915 4.61770 4.68817 4.73057 4.74684 4.86961 4.93060 4.95363 4.99003 5.02976 5.10858 5.13747 5.17579 5.20469 5.23762 5.25161 5.27218 5.37410 5.43769 5.49857 5.57502 5.74800 5.97406 6.09305 6.13956 6.21600 6.80201 7.38018 8.90237 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009795 B = 0.005929 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2857.940010 B = 4721.692968 C = 6764.253439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.533 5.533 4 C 0.041 3.959 5 C -0.190 4.190 6 C 0.079 3.921 7 H 0.061 0.939 8 C -0.106 4.106 9 C 0.109 3.891 10 N -1.014 6.014 11 S 2.809 3.191 12 O -0.997 6.997 13 O -1.017 7.017 14 N -0.997 5.997 15 C 0.121 3.879 16 C -0.168 4.168 17 C 0.262 3.738 18 C -0.534 4.534 19 H 0.070 0.930 20 C 0.013 3.987 21 N -0.928 5.928 22 Si 0.953 3.047 23 H -0.257 1.257 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.130 3.870 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.042 0.958 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.093 0.907 45 H 0.046 0.954 46 H 0.021 0.979 47 H 0.013 0.987 48 H 0.265 0.735 49 H 0.059 0.941 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 -15.827 -6.155 18.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.083 4.083 3 N -0.257 5.257 4 C -0.086 4.086 5 C -0.248 4.248 6 C -0.031 4.031 7 H 0.079 0.921 8 C -0.145 4.145 9 C -0.016 4.016 10 N -0.855 5.855 11 S 2.820 3.180 12 O -0.981 6.981 13 O -1.001 7.001 14 N -0.837 5.837 15 C -0.004 4.004 16 C -0.227 4.227 17 C 0.138 3.862 18 C -0.573 4.573 19 H 0.088 0.912 20 C -0.186 4.186 21 N -0.568 5.568 22 Si 0.778 3.222 23 H -0.181 1.181 24 H -0.207 1.207 25 H -0.207 1.207 26 C 0.004 3.996 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.065 0.935 46 H 0.039 0.961 47 H 0.031 0.969 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.653 -14.755 -7.130 18.086 hybrid contribution 0.611 -0.186 2.145 2.238 sum -7.042 -14.941 -4.986 17.253 Atomic orbital electron populations 1.21753 0.94066 1.02217 1.02075 1.22223 0.96660 0.87760 1.01670 1.62346 1.11800 1.17425 1.34145 1.22237 1.01461 0.97767 0.87181 1.22380 1.00732 1.01994 0.99720 1.22593 0.88607 0.93667 0.98262 0.92115 1.22811 0.95858 1.00712 0.95105 1.22276 0.99384 0.80561 0.99373 1.58777 1.53957 1.23787 1.49003 1.00796 0.72465 0.72261 0.72500 1.93510 1.82957 1.86326 1.35353 1.93511 1.69381 1.52354 1.84884 1.57742 1.24029 1.66463 1.35499 1.21259 0.85096 0.95211 0.98842 1.22197 1.00743 0.99970 0.99756 1.18709 0.96914 0.91168 0.79426 1.21794 1.49087 0.94900 0.91562 0.91168 1.25770 0.94933 0.96526 1.01408 1.70070 1.50708 1.14855 1.21170 0.85583 0.77726 0.79736 0.79173 1.18068 1.20702 1.20725 1.21640 0.90035 0.98412 0.89532 0.92504 0.92941 0.90869 0.94112 0.89521 0.92374 0.88829 0.93887 0.92134 0.90845 0.87187 0.89524 0.89419 0.90467 0.90107 0.89608 0.93440 0.88815 0.93510 0.96083 0.96913 0.92613 0.92280 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.84 71.98 0.71 -1.37 16 2 C 0.04 0.74 5.34 86.30 0.46 1.20 16 3 N -0.53 -12.19 4.54 -864.04 -3.92 -16.11 16 4 C 0.04 0.99 5.59 86.31 0.48 1.48 16 5 C -0.19 -4.42 9.24 71.98 0.67 -3.75 16 6 C 0.08 2.01 2.17 46.11 0.10 2.11 16 7 H 0.06 1.57 6.55 -2.39 -0.02 1.55 16 8 C -0.11 -2.15 5.49 31.99 0.18 -1.98 16 9 C 0.11 2.75 7.10 86.85 0.62 3.37 16 10 N -1.01 -35.27 3.76 -506.43 -1.90 -37.17 16 11 S 2.81 117.92 6.31 -56.49 -0.36 117.56 16 12 O -1.00 -41.05 16.43 -128.00 -2.10 -43.16 16 13 O -1.02 -51.32 16.27 -128.00 -2.08 -53.41 16 14 N -1.00 -42.35 2.82 -519.85 -1.47 -43.81 16 15 C 0.12 4.15 6.06 86.38 0.52 4.67 16 16 C -0.17 -5.23 10.24 71.98 0.74 -4.50 16 17 C 0.26 13.50 5.44 85.63 0.47 13.96 16 18 C -0.53 -27.94 8.94 25.60 0.23 -27.71 16 19 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 20 C 0.01 0.70 5.46 84.66 0.46 1.17 16 21 N -0.93 -54.06 13.29 21.45 0.28 -53.78 16 22 Si 0.95 41.80 29.54 68.60 2.03 43.83 16 23 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 24 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 C 0.13 4.51 5.51 86.73 0.48 4.99 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 0.79 6.52 -2.39 -0.02 0.77 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.04 0.67 6.12 -2.39 -0.01 0.66 16 31 H 0.09 1.25 6.77 -2.39 -0.02 1.24 16 32 H 0.06 1.68 6.78 -2.39 -0.02 1.66 16 33 H 0.09 1.91 6.41 -2.39 -0.02 1.90 16 34 H 0.04 1.16 6.38 -2.39 -0.02 1.14 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.41 6.49 -2.39 -0.02 1.39 16 37 H 0.11 1.53 7.87 -2.39 -0.02 1.51 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.09 2.08 7.78 -2.39 -0.02 2.06 16 40 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 42 H 0.09 2.51 7.61 -2.39 -0.02 2.49 16 43 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.02 1.14 8.11 -2.39 -0.02 1.12 16 47 H 0.01 0.75 6.91 -2.39 -0.02 0.74 16 48 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 49 H 0.06 2.19 7.55 -2.39 -0.02 2.17 16 50 H 0.05 2.11 7.69 -2.39 -0.02 2.09 16 Total: -1.00 -68.41 395.59 -2.52 -70.93 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.90 Total: 21.48 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 6.10 Total: -6.37 kcal Atomic # 7 Polarization: -143.86 SS G_CDS: -7.00 Total: -150.86 kcal Atomic # 8 Polarization: -92.38 SS G_CDS: -4.19 Total: -96.56 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 117.92 SS G_CDS: -0.36 Total: 117.56 kcal Total: -68.41 -2.52 -70.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337089952.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.919 kcal (2) G-P(sol) polarization free energy of solvation -68.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds