Wall clock time and date at job start Tue Mar 31 2020 17:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46497 * 120.00064 * 280.48685 * 3 2 1 5 5 C 1.50704 * 109.47020 * 274.99943 * 4 3 2 6 6 H 1.07989 * 120.00005 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99962 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00468 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00060 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47286 * 89.99849 * 9 7 5 11 11 H 1.48501 * 109.46916 * 210.00228 * 9 7 5 12 12 H 1.48499 * 109.46895 * 329.99540 * 9 7 5 13 13 S 1.65603 * 119.99979 * 100.48519 * 3 2 1 14 14 O 1.42095 * 106.40148 * 159.97811 * 13 3 2 15 15 O 1.42095 * 106.39896 * 27.06087 * 13 3 2 16 16 N 1.65596 * 107.21699 * 273.51961 * 13 3 2 17 17 C 1.46500 * 119.99981 * 88.51211 * 16 13 3 18 18 C 1.46502 * 120.00041 * 268.50606 * 16 13 3 19 19 C 1.53003 * 109.47087 * 257.35600 * 18 16 13 20 20 H 1.08997 * 109.50472 * 305.99830 * 19 18 16 21 21 C 1.53123 * 109.49871 * 185.92082 * 19 18 16 22 22 C 1.53117 * 109.15662 * 182.36594 * 21 19 18 23 23 C 1.53045 * 109.27989 * 57.65128 * 22 21 19 24 24 N 1.46843 * 109.52440 * 300.82358 * 23 22 21 25 25 C 1.46899 * 110.99666 * 185.83705 * 24 23 22 26 26 C 1.46846 * 111.20061 * 61.73912 * 24 23 22 27 27 H 1.09002 * 109.47273 * 185.61954 * 1 2 3 28 28 H 1.08999 * 109.47190 * 305.61572 * 1 2 3 29 29 H 1.09001 * 109.47024 * 65.62031 * 1 2 3 30 30 H 1.09001 * 109.46746 * 240.00367 * 2 1 3 31 31 H 1.08997 * 109.47217 * 120.00100 * 2 1 3 32 32 H 1.09005 * 109.47684 * 35.00177 * 4 3 2 33 33 H 1.09006 * 109.47265 * 155.00152 * 4 3 2 34 34 H 0.96997 * 120.01026 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47111 * 269.99687 * 17 16 13 36 36 H 1.09000 * 109.47387 * 29.99726 * 17 16 13 37 37 H 1.08996 * 109.47318 * 149.99861 * 17 16 13 38 38 H 1.09005 * 109.46610 * 137.35686 * 18 16 13 39 39 H 1.08991 * 109.47136 * 17.35783 * 18 16 13 40 40 H 1.08997 * 109.52423 * 62.46456 * 21 19 18 41 41 H 1.08996 * 109.57556 * 302.29794 * 21 19 18 42 42 H 1.09005 * 109.50589 * 297.71531 * 22 21 19 43 43 H 1.08998 * 109.50281 * 177.59646 * 22 21 19 44 44 H 1.08998 * 109.46289 * 180.80256 * 23 22 21 45 45 H 1.09000 * 109.45458 * 60.84004 * 23 22 21 46 46 H 1.09001 * 109.47459 * 55.79011 * 25 24 23 47 47 H 1.09002 * 109.46797 * 175.78981 * 25 24 23 48 48 H 1.08996 * 109.47485 * 295.78690 * 25 24 23 49 49 H 1.08998 * 109.46285 * 58.26938 * 26 24 23 50 50 H 1.08996 * 109.46335 * 178.24190 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0447 2.1488 -1.2475 5 6 3.3197 1.8507 -1.9938 6 1 4.0384 1.1592 -1.5800 7 6 3.5688 2.4619 -3.2043 8 7 4.6811 2.2015 -3.8558 9 14 2.3264 3.6599 -3.9191 10 1 2.6332 5.0331 -3.4445 11 1 2.3978 3.6209 -5.4019 12 1 0.9606 3.2777 -3.4791 13 16 2.5403 2.0749 1.4102 14 8 3.3593 3.1746 1.0373 15 8 2.9955 1.0117 2.2358 16 7 1.2115 2.7154 2.1627 17 6 0.4200 1.8907 3.0790 18 6 0.8275 4.1068 1.9121 19 6 1.2579 4.9757 3.0957 20 1 0.8549 4.5589 4.0187 21 6 0.7283 6.3995 2.9037 22 6 1.2129 7.2763 4.0617 23 6 2.7421 7.2451 4.1135 24 7 3.1988 5.8619 4.2989 25 6 4.6542 5.8094 4.4916 26 6 2.7858 5.0112 3.1754 27 1 -0.3634 -1.0227 0.1006 28 1 -0.3633 0.5984 0.8354 29 1 -0.3633 0.4242 -0.9360 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.1896 1.8706 -1.8636 33 1 1.9974 3.2138 -1.0199 34 1 4.8567 2.6316 -4.7073 35 1 -0.3669 1.3819 2.5222 36 1 1.0661 1.1515 3.5527 37 1 -0.0280 2.5250 3.8438 38 1 -0.2539 4.1688 1.7901 39 1 1.3164 4.4609 1.0047 40 1 -0.3614 6.3841 2.8898 41 1 1.0990 6.8031 1.9615 42 1 0.8092 6.8957 5.0000 43 1 0.8747 8.3011 3.9085 44 1 3.0899 7.8570 4.9458 45 1 3.1451 7.6388 3.1804 46 1 4.9330 6.4482 5.3297 47 1 4.9562 4.7832 4.7007 48 1 5.1533 6.1579 3.5875 49 1 3.1886 5.4153 2.2467 50 1 3.1652 4.0007 3.3264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337090727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:01 Heat of formation + Delta-G solvation = -72.781165 kcal Electronic energy + Delta-G solvation = -29679.798954 eV Core-core repulsion = 25868.777716 eV Total energy + Delta-G solvation = -3811.021238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.30791 -36.76514 -36.35127 -36.15301 -35.22032 -33.51890 -32.60019 -31.22348 -30.26301 -27.28564 -27.10900 -26.75081 -24.75457 -22.96559 -22.79263 -21.65395 -21.37424 -19.70118 -18.35746 -17.43963 -17.01774 -16.66764 -16.02830 -15.77808 -15.19376 -15.02139 -14.68784 -14.54075 -14.20785 -14.06252 -13.71084 -13.52641 -13.28653 -12.97031 -12.86839 -12.68083 -12.47256 -12.36023 -12.19877 -12.14278 -11.96855 -11.92600 -11.67602 -11.42255 -11.39747 -11.17139 -11.11998 -11.00132 -10.95620 -10.72746 -10.53037 -10.50672 -10.39678 -10.30314 -10.17291 -9.56768 -8.89377 -8.60604 -8.31529 -8.12745 -6.09589 -4.08757 1.10279 3.24592 3.29826 3.31139 3.39934 3.90914 3.99017 4.36438 4.64895 4.72800 4.79069 4.89177 4.94417 5.11380 5.20728 5.24424 5.29956 5.34786 5.41095 5.50882 5.51528 5.53397 5.56609 5.61852 5.64855 5.72464 5.74016 5.74997 5.78537 5.88051 5.89944 5.92276 5.99199 6.04739 6.12836 6.16759 6.21816 6.42748 6.46720 6.52989 6.67723 6.77336 7.06306 7.08519 7.11113 7.41690 7.57386 8.47887 8.95303 9.49581 11.04028 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.004807 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.006765 B = 5822.837019 C = 6736.979790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.870 3.130 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.777 3.223 14 O -0.958 6.958 15 O -0.992 6.992 16 N -1.014 6.014 17 C 0.086 3.914 18 C 0.128 3.872 19 C -0.100 4.100 20 H 0.082 0.918 21 C -0.116 4.116 22 C -0.114 4.114 23 C 0.052 3.948 24 N -0.545 5.545 25 C 0.023 3.977 26 C 0.062 3.938 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.265 0.735 35 H 0.052 0.948 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.029 0.971 49 H 0.053 0.947 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.763 5.866 15.396 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.827 5.827 4 C 0.105 3.895 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.785 3.215 14 O -0.941 6.941 15 O -0.976 6.976 16 N -0.852 5.852 17 C -0.060 4.060 18 C 0.002 3.998 19 C -0.121 4.121 20 H 0.100 0.900 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.076 4.076 24 N -0.270 5.270 25 C -0.125 4.125 26 C -0.066 4.066 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.047 0.953 49 H 0.071 0.929 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.984 5.740 15.963 20.209 hybrid contribution -0.501 0.911 -1.454 1.787 sum -11.485 6.651 14.509 19.663 Atomic orbital electron populations 1.22294 0.97134 1.01399 1.02255 1.21168 0.93165 0.82954 1.03771 1.57565 1.80399 1.21136 1.23565 1.19390 0.98366 0.90224 0.81476 1.21370 1.03590 1.27550 1.04460 0.90494 1.24857 0.95208 0.96188 0.96620 1.69890 1.24474 1.43420 1.15557 0.86947 0.82280 0.82365 0.78703 1.19830 1.20955 1.18940 1.02185 0.73415 0.73246 0.72607 1.93627 1.64079 1.53491 1.82941 1.93518 1.79177 1.56677 1.68210 1.58133 1.48869 1.19424 1.58803 1.21518 0.96094 0.95093 0.93269 1.21306 1.00779 0.79666 0.98084 1.21586 0.95607 0.95336 0.99521 0.89996 1.21594 1.00424 0.94589 0.98860 1.21549 0.94935 0.99455 0.99205 1.22111 0.95829 0.89555 1.00099 1.61945 1.13029 1.09317 1.42694 1.22353 0.87233 1.02560 1.00347 1.22161 0.94907 0.97241 0.92304 0.92124 0.92929 0.92161 0.89650 0.90419 0.94976 0.95448 0.92532 0.92960 0.90362 0.91121 0.90608 0.89476 0.91544 0.91706 0.91223 0.91583 0.91054 0.94811 0.91593 0.91296 0.95273 0.92888 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 10.17 37.16 0.38 -1.91 16 2 C 0.12 1.97 6.43 -4.04 -0.03 1.95 16 3 N -0.99 -19.86 2.84 -115.66 -0.33 -20.18 16 4 C 0.23 5.31 4.15 -5.19 -0.02 5.29 16 5 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 6 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 9 Si 0.87 20.91 27.47 -169.99 -4.67 16.24 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.88 6.54 56.52 0.37 -5.51 16 13 S 2.78 54.25 5.36 -107.50 -0.58 53.68 16 14 O -0.96 -21.69 13.59 -57.18 -0.78 -22.47 16 15 O -0.99 -20.78 15.37 -57.18 -0.88 -21.66 16 16 N -1.01 -14.65 2.88 -121.75 -0.35 -15.00 16 17 C 0.09 0.97 10.55 59.85 0.63 1.60 16 18 C 0.13 1.66 4.92 -4.04 -0.02 1.64 16 19 C -0.10 -1.22 2.47 -90.54 -0.22 -1.45 16 20 H 0.08 0.96 7.48 -51.93 -0.39 0.57 16 21 C -0.12 -1.19 5.29 -26.61 -0.14 -1.33 16 22 C -0.11 -1.07 6.09 -26.65 -0.16 -1.24 16 23 C 0.05 0.57 5.46 -3.83 -0.02 0.55 16 24 N -0.55 -7.21 4.91 -242.96 -1.19 -8.41 16 25 C 0.02 0.29 9.59 60.06 0.58 0.87 16 26 C 0.06 0.93 3.44 -3.83 -0.01 0.91 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.63 6.06 -51.93 -0.31 0.32 16 29 H 0.06 0.84 7.83 -51.93 -0.41 0.43 16 30 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.26 6.90 -51.93 -0.36 0.90 16 32 H 0.03 0.71 6.84 -51.93 -0.36 0.36 16 33 H 0.03 0.64 6.94 -51.93 -0.36 0.28 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.23 16 35 H 0.05 0.51 6.15 -51.92 -0.32 0.19 16 36 H 0.08 0.95 7.03 -51.93 -0.37 0.58 16 37 H 0.07 0.64 7.42 -51.93 -0.39 0.25 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.29 7.30 -51.93 -0.38 0.91 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16 45 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.05 0.91 7.79 -51.93 -0.40 0.50 16 50 H 0.06 1.09 6.59 -51.93 -0.34 0.74 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -33.76 389.38 -10.65 -44.41 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.04 Total: 0.64 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.52 Total: -6.44 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.10 Total: -70.27 kcal Atomic # 8 Polarization: -42.47 SS G_CDS: -1.66 Total: -44.12 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Atomic # 16 Polarization: 54.25 SS G_CDS: -0.58 Total: 53.68 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.76 -10.65 -44.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.373 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds