Wall clock time and date at job start Tue Mar 31 2020 17:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.46931 * 2 1 4 4 C 1.46497 * 120.00064 * 280.48685 * 3 2 1 5 5 C 1.50704 * 109.47020 * 274.99943 * 4 3 2 6 6 H 1.07989 * 120.00005 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99962 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00468 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00060 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47286 * 89.99849 * 9 7 5 11 11 H 1.48501 * 109.46916 * 210.00228 * 9 7 5 12 12 H 1.48499 * 109.46895 * 329.99540 * 9 7 5 13 13 S 1.65603 * 119.99979 * 100.48519 * 3 2 1 14 14 O 1.42095 * 106.40148 * 159.97811 * 13 3 2 15 15 O 1.42095 * 106.39896 * 27.06087 * 13 3 2 16 16 N 1.65596 * 107.21699 * 273.51961 * 13 3 2 17 17 C 1.46500 * 119.99981 * 88.51211 * 16 13 3 18 18 C 1.46502 * 120.00041 * 268.50606 * 16 13 3 19 19 C 1.53003 * 109.47087 * 257.35600 * 18 16 13 20 20 H 1.08997 * 109.50472 * 305.99830 * 19 18 16 21 21 C 1.53123 * 109.49871 * 185.92082 * 19 18 16 22 22 C 1.53117 * 109.15662 * 182.36594 * 21 19 18 23 23 C 1.53045 * 109.27989 * 57.65128 * 22 21 19 24 24 N 1.46843 * 109.52440 * 300.82358 * 23 22 21 25 25 C 1.46899 * 110.99666 * 185.83705 * 24 23 22 26 26 C 1.46846 * 111.20061 * 61.73912 * 24 23 22 27 27 H 1.09002 * 109.47273 * 185.61954 * 1 2 3 28 28 H 1.08999 * 109.47190 * 305.61572 * 1 2 3 29 29 H 1.09001 * 109.47024 * 65.62031 * 1 2 3 30 30 H 1.09001 * 109.46746 * 240.00367 * 2 1 3 31 31 H 1.08997 * 109.47217 * 120.00100 * 2 1 3 32 32 H 1.09005 * 109.47684 * 35.00177 * 4 3 2 33 33 H 1.09006 * 109.47265 * 155.00152 * 4 3 2 34 34 H 0.96997 * 120.01026 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47111 * 269.99687 * 17 16 13 36 36 H 1.09000 * 109.47387 * 29.99726 * 17 16 13 37 37 H 1.08996 * 109.47318 * 149.99861 * 17 16 13 38 38 H 1.09005 * 109.46610 * 137.35686 * 18 16 13 39 39 H 1.08991 * 109.47136 * 17.35783 * 18 16 13 40 40 H 1.08997 * 109.52423 * 62.46456 * 21 19 18 41 41 H 1.08996 * 109.57556 * 302.29794 * 21 19 18 42 42 H 1.09005 * 109.50589 * 297.71531 * 22 21 19 43 43 H 1.08998 * 109.50281 * 177.59646 * 22 21 19 44 44 H 1.08998 * 109.46289 * 180.80256 * 23 22 21 45 45 H 1.09000 * 109.45458 * 60.84004 * 23 22 21 46 46 H 1.09001 * 109.47459 * 55.79011 * 25 24 23 47 47 H 1.09002 * 109.46797 * 175.78981 * 25 24 23 48 48 H 1.08996 * 109.47485 * 295.78690 * 25 24 23 49 49 H 1.08998 * 109.46285 * 58.26938 * 26 24 23 50 50 H 1.08996 * 109.46335 * 178.24190 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0447 2.1488 -1.2475 5 6 3.3197 1.8507 -1.9938 6 1 4.0384 1.1592 -1.5800 7 6 3.5688 2.4619 -3.2043 8 7 4.6811 2.2015 -3.8558 9 14 2.3264 3.6599 -3.9191 10 1 2.6332 5.0331 -3.4445 11 1 2.3978 3.6209 -5.4019 12 1 0.9606 3.2777 -3.4791 13 16 2.5403 2.0749 1.4102 14 8 3.3593 3.1746 1.0373 15 8 2.9955 1.0117 2.2358 16 7 1.2115 2.7154 2.1627 17 6 0.4200 1.8907 3.0790 18 6 0.8275 4.1068 1.9121 19 6 1.2579 4.9757 3.0957 20 1 0.8549 4.5589 4.0187 21 6 0.7283 6.3995 2.9037 22 6 1.2129 7.2763 4.0617 23 6 2.7421 7.2451 4.1135 24 7 3.1988 5.8619 4.2989 25 6 4.6542 5.8094 4.4916 26 6 2.7858 5.0112 3.1754 27 1 -0.3634 -1.0227 0.1006 28 1 -0.3633 0.5984 0.8354 29 1 -0.3633 0.4242 -0.9360 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.1896 1.8706 -1.8636 33 1 1.9974 3.2138 -1.0199 34 1 4.8567 2.6316 -4.7073 35 1 -0.3669 1.3819 2.5222 36 1 1.0661 1.1515 3.5527 37 1 -0.0280 2.5250 3.8438 38 1 -0.2539 4.1688 1.7901 39 1 1.3164 4.4609 1.0047 40 1 -0.3614 6.3841 2.8898 41 1 1.0990 6.8031 1.9615 42 1 0.8092 6.8957 5.0000 43 1 0.8747 8.3011 3.9085 44 1 3.0899 7.8570 4.9458 45 1 3.1451 7.6388 3.1804 46 1 4.9330 6.4482 5.3297 47 1 4.9562 4.7832 4.7007 48 1 5.1533 6.1579 3.5875 49 1 3.1886 5.4153 2.2467 50 1 3.1652 4.0007 3.3264 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337090727.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:00 Heat of formation + Delta-G solvation = -98.294826 kcal Electronic energy + Delta-G solvation = -29680.905309 eV Core-core repulsion = 25868.777716 eV Total energy + Delta-G solvation = -3812.127593 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.28389 -38.38860 -37.78775 -37.37764 -36.86505 -34.70613 -34.44509 -32.17329 -31.79925 -29.00546 -28.20339 -27.70868 -25.79761 -24.66399 -23.77205 -23.08479 -22.49829 -20.64646 -19.78577 -19.19532 -18.68643 -18.33923 -17.44524 -16.80497 -16.52586 -16.21341 -16.03375 -15.61694 -15.50595 -15.35513 -14.88980 -14.83074 -14.57048 -14.33212 -14.14358 -13.90713 -13.83980 -13.66183 -13.47130 -13.38552 -13.30652 -13.18405 -13.07571 -12.88714 -12.72790 -12.57994 -12.49153 -12.34247 -12.18195 -12.10092 -11.89367 -11.73460 -11.63274 -11.59931 -11.42972 -11.23342 -10.80380 -9.98600 -9.77954 -9.39182 -8.31096 -6.37022 -0.40444 1.33821 1.38070 1.46632 2.01190 2.33240 2.53094 2.91330 3.02913 3.34070 3.70041 3.83475 3.87276 3.91659 4.04287 4.17484 4.32800 4.40818 4.41851 4.43307 4.46660 4.49894 4.54884 4.57678 4.63510 4.73899 4.75954 4.81697 4.86478 4.88889 4.89580 4.97110 4.97880 5.00004 5.02197 5.06482 5.14301 5.25302 5.28372 5.41735 5.44940 5.48482 5.53400 5.61974 5.86972 5.99917 6.10923 6.29252 6.65510 7.26031 8.86723 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.004807 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.006765 B = 5822.837019 C = 6736.979790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.995 5.995 4 C 0.240 3.760 5 C -0.543 4.543 6 H 0.023 0.977 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.226 1.226 13 S 2.782 3.218 14 O -1.000 7.000 15 O -1.015 7.015 16 N -1.002 6.002 17 C 0.078 3.922 18 C 0.123 3.877 19 C -0.094 4.094 20 H 0.096 0.904 21 C -0.114 4.114 22 C -0.109 4.109 23 C 0.046 3.954 24 N -0.547 5.547 25 C 0.020 3.980 26 C 0.063 3.937 27 H 0.087 0.913 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.267 0.733 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.096 0.904 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.020 0.980 46 H 0.092 0.908 47 H 0.057 0.943 48 H 0.014 0.986 49 H 0.019 0.981 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 7.531 16.846 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.835 5.835 4 C 0.115 3.885 5 C -0.582 4.582 6 H 0.041 0.959 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.764 3.236 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.148 1.148 13 S 2.792 3.208 14 O -0.984 6.984 15 O -0.999 6.999 16 N -0.843 5.843 17 C -0.066 4.066 18 C -0.003 4.003 19 C -0.115 4.115 20 H 0.114 0.886 21 C -0.153 4.153 22 C -0.147 4.147 23 C -0.082 4.082 24 N -0.272 5.272 25 C -0.128 4.128 26 C -0.066 4.066 27 H 0.106 0.894 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.121 0.879 38 H 0.136 0.864 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.072 0.928 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.038 0.962 46 H 0.111 0.889 47 H 0.076 0.924 48 H 0.032 0.968 49 H 0.037 0.963 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.710 7.370 17.439 24.602 hybrid contribution 1.098 0.323 -1.786 2.122 sum -14.611 7.693 15.653 22.753 Atomic orbital electron populations 1.22214 0.93367 1.03570 1.02853 1.21393 0.96278 0.81300 1.02977 1.57546 1.80931 1.22310 1.22712 1.19126 0.96085 0.90883 0.82423 1.21698 1.04873 1.26439 1.05177 0.95857 1.25942 0.97634 0.98423 0.97025 1.70074 1.27234 1.45340 1.16336 0.85806 0.80928 0.79082 0.77818 1.19418 1.20392 1.14842 1.01701 0.74150 0.72409 0.72526 1.93570 1.66400 1.54760 1.83642 1.93473 1.80302 1.57588 1.68560 1.57695 1.47934 1.20310 1.58409 1.21829 0.95902 0.95257 0.93648 1.21566 1.02890 0.78334 0.97487 1.21597 0.93137 0.96955 0.99770 0.88566 1.21621 1.02111 0.92871 0.98654 1.21563 0.93176 1.00688 0.99230 1.22285 0.97491 0.88203 1.00178 1.62034 1.13089 1.10569 1.41472 1.22421 0.87268 1.02475 1.00677 1.22085 0.97295 0.95819 0.91357 0.89405 0.91129 0.92443 0.91680 0.90162 0.92793 0.94920 0.92363 0.90528 0.91649 0.87894 0.86381 0.91812 0.88541 0.92848 0.90397 0.89375 0.89264 0.96151 0.88916 0.92378 0.96756 0.96312 0.94598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 10.17 71.98 0.73 -3.08 16 2 C 0.11 3.59 6.43 86.38 0.56 4.14 16 3 N -1.00 -40.40 2.84 -519.84 -1.48 -41.88 16 4 C 0.24 11.11 4.15 85.63 0.36 11.46 16 5 C -0.54 -32.08 9.94 25.60 0.25 -31.83 16 6 H 0.02 1.57 8.06 -2.92 -0.02 1.54 16 7 C 0.01 0.44 5.47 84.65 0.46 0.90 16 8 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 9 Si 0.94 42.87 27.47 68.60 1.88 44.75 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.23 -8.82 6.54 99.48 0.65 -8.17 16 13 S 2.78 111.27 5.36 -56.49 -0.30 110.97 16 14 O -1.00 -47.90 13.59 -128.00 -1.74 -49.64 16 15 O -1.02 -43.96 15.37 -128.00 -1.97 -45.93 16 16 N -1.00 -27.20 2.88 -539.12 -1.55 -28.75 16 17 C 0.08 1.49 10.55 127.77 1.35 2.84 16 18 C 0.12 2.87 4.92 86.38 0.43 3.30 16 19 C -0.09 -2.09 2.47 -10.74 -0.03 -2.12 16 20 H 0.10 1.89 7.48 -2.39 -0.02 1.87 16 21 C -0.11 -1.96 5.29 30.67 0.16 -1.79 16 22 C -0.11 -1.69 6.09 30.65 0.19 -1.51 16 23 C 0.05 0.94 5.46 86.33 0.47 1.41 16 24 N -0.55 -14.28 4.91 -922.60 -4.53 -18.81 16 25 C 0.02 0.51 9.59 127.69 1.22 1.73 16 26 C 0.06 1.92 3.44 86.33 0.30 2.22 16 27 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.40 6.06 -2.39 -0.01 1.39 16 29 H 0.06 1.41 7.83 -2.39 -0.02 1.39 16 30 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.08 2.63 6.90 -2.39 -0.02 2.61 16 32 H 0.05 2.28 6.84 -2.38 -0.02 2.26 16 33 H 0.03 1.49 6.94 -2.38 -0.02 1.48 16 34 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 35 H 0.08 1.13 6.15 -2.38 -0.01 1.12 16 36 H 0.06 1.46 7.03 -2.39 -0.02 1.44 16 37 H 0.10 1.37 7.42 -2.39 -0.02 1.35 16 38 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.06 1.83 7.30 -2.39 -0.02 1.81 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 43 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 45 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 46 H 0.09 1.81 8.09 -2.39 -0.02 1.80 16 47 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 48 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.02 0.68 7.79 -2.39 -0.02 0.67 16 50 H 0.04 1.27 6.59 -2.39 -0.02 1.25 16 Total: -1.00 -80.27 389.38 -2.10 -82.37 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.84 Total: 19.83 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 6.45 Total: -12.32 kcal Atomic # 7 Polarization: -142.78 SS G_CDS: -7.26 Total: -150.04 kcal Atomic # 8 Polarization: -91.86 SS G_CDS: -3.71 Total: -95.57 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.88 Total: 44.75 kcal Atomic # 16 Polarization: 111.27 SS G_CDS: -0.30 Total: 110.97 kcal Total: -80.27 -2.10 -82.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090727.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.923 kcal (2) G-P(sol) polarization free energy of solvation -80.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds