Wall clock time and date at job start Tue Mar 31 2020 17:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46959 * 2 1 4 4 C 1.46498 * 119.99650 * 84.99616 * 3 2 1 5 5 C 1.50695 * 109.47498 * 274.54381 * 4 3 2 6 6 H 1.07999 * 120.00145 * 4.55189 * 5 4 3 7 7 C 1.37879 * 120.00206 * 184.55584 * 5 4 3 8 8 N 1.31520 * 119.99906 * 5.04291 * 7 5 4 9 9 Si 1.86801 * 120.00086 * 185.04571 * 7 5 4 10 10 H 1.48506 * 109.46855 * 269.99546 * 9 7 5 11 11 H 1.48494 * 109.46927 * 29.99476 * 9 7 5 12 12 H 1.48500 * 109.46879 * 149.99799 * 9 7 5 13 13 S 1.65597 * 119.99691 * 265.00043 * 3 2 1 14 14 O 1.42098 * 106.40530 * 28.52267 * 13 3 2 15 15 O 1.42103 * 106.39904 * 161.44038 * 13 3 2 16 16 N 1.65597 * 107.21670 * 274.97740 * 13 3 2 17 17 C 1.46504 * 119.99788 * 94.92270 * 16 13 3 18 18 C 1.46504 * 120.00406 * 274.91902 * 16 13 3 19 19 C 1.53001 * 109.47201 * 266.78293 * 18 16 13 20 20 H 1.09002 * 109.49779 * 53.74885 * 19 18 16 21 21 C 1.53118 * 109.50141 * 173.86372 * 19 18 16 22 22 C 1.53115 * 109.15794 * 177.59619 * 21 19 18 23 23 C 1.53038 * 109.28130 * 302.34827 * 22 21 19 24 24 N 1.46841 * 109.52300 * 59.17577 * 23 22 21 25 25 C 1.46901 * 110.99929 * 174.16135 * 24 23 22 26 26 C 1.46845 * 111.20070 * 298.26272 * 24 23 22 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47033 * 299.99809 * 1 2 3 29 29 H 1.09004 * 109.47111 * 60.00328 * 1 2 3 30 30 H 1.08997 * 109.47033 * 240.00191 * 2 1 3 31 31 H 1.08999 * 109.47014 * 120.00156 * 2 1 3 32 32 H 1.09004 * 109.46777 * 154.54313 * 4 3 2 33 33 H 1.09001 * 109.47130 * 34.55001 * 4 3 2 34 34 H 0.97004 * 119.99977 * 354.88228 * 8 7 5 35 35 H 1.08994 * 109.46928 * 89.99933 * 17 16 13 36 36 H 1.09001 * 109.46642 * 209.99957 * 17 16 13 37 37 H 1.09000 * 109.46978 * 329.99631 * 17 16 13 38 38 H 1.09002 * 109.46423 * 26.78386 * 18 16 13 39 39 H 1.08994 * 109.47025 * 146.77935 * 18 16 13 40 40 H 1.09000 * 109.52346 * 297.50345 * 21 19 18 41 41 H 1.08998 * 109.52159 * 57.69422 * 21 19 18 42 42 H 1.09004 * 109.50524 * 182.40555 * 22 21 19 43 43 H 1.08996 * 109.50531 * 62.29040 * 22 21 19 44 44 H 1.09004 * 109.45844 * 299.16341 * 23 22 21 45 45 H 1.08996 * 109.45481 * 179.19234 * 23 22 21 46 46 H 1.09004 * 109.46949 * 189.06957 * 25 24 23 47 47 H 1.09001 * 109.47296 * 309.06739 * 25 24 23 48 48 H 1.09000 * 109.46887 * 69.07022 * 25 24 23 49 49 H 1.08997 * 109.46137 * 301.72183 * 26 24 23 50 50 H 1.09003 * 109.46207 * 181.75499 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 1.2639 5 6 0.8387 2.7381 1.6299 6 1 -0.0359 2.5491 1.0253 7 6 0.7482 3.5555 2.7366 8 7 1.8312 3.8658 3.4152 9 14 -0.9126 4.2220 3.2722 10 1 -1.1644 5.5220 2.5999 11 1 -1.9773 3.2568 2.8980 12 1 -0.9163 4.4171 4.7443 13 16 2.4121 2.1201 -1.4287 14 8 1.5997 1.5200 -2.4282 15 8 2.4199 3.5172 -1.1690 16 7 3.9747 1.7016 -1.7826 17 6 4.2464 0.5657 -2.6670 18 6 5.0856 2.4672 -1.2114 19 6 5.5032 3.5670 -2.1895 20 1 4.6326 4.1658 -2.4571 21 6 6.5578 4.4619 -1.5326 22 6 7.0138 5.5226 -2.5383 23 6 7.5606 4.8310 -3.7892 24 7 6.5141 3.9877 -4.3807 25 6 6.9583 3.4165 -5.6592 26 6 6.0938 2.9321 -3.4505 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.9137 2.8866 1.1537 33 1 2.4611 1.4167 2.0498 34 1 2.6818 3.4614 3.1828 35 1 4.2982 0.9129 -3.6989 36 1 5.1960 0.1081 -2.3895 37 1 3.4471 -0.1692 -2.5706 38 1 4.7700 2.9182 -0.2706 39 1 5.9299 1.8021 -1.0303 40 1 6.1277 4.9500 -0.6581 41 1 7.4119 3.8562 -1.2297 42 1 7.7956 6.1363 -2.0907 43 1 6.1674 6.1527 -2.8115 44 1 8.4155 4.2118 -3.5174 45 1 7.8728 5.5837 -4.5130 46 1 6.1161 2.9312 -6.1525 47 1 7.3445 4.2112 -6.2975 48 1 7.7439 2.6834 -5.4761 49 1 6.9556 2.3218 -3.1804 50 1 5.3407 2.3055 -3.9284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337090728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:04 Heat of formation + Delta-G solvation = -78.685400 kcal Electronic energy + Delta-G solvation = -29342.542202 eV Core-core repulsion = 25531.264937 eV Total energy + Delta-G solvation = -3811.277265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.38929 -36.70212 -36.32880 -36.17378 -35.13676 -33.59808 -32.81361 -31.14948 -29.77521 -27.68530 -26.72714 -26.30165 -24.45942 -22.93937 -22.77396 -21.96692 -21.66389 -19.75001 -18.47754 -17.40570 -16.96220 -16.67580 -16.08761 -15.87775 -15.26506 -14.79032 -14.67457 -14.45463 -14.03311 -13.82050 -13.66667 -13.53784 -13.21726 -13.12617 -13.00503 -12.74088 -12.40041 -12.34842 -12.18152 -12.15956 -11.91505 -11.69670 -11.59642 -11.32571 -11.29385 -11.20835 -11.03210 -10.99545 -10.79545 -10.77597 -10.49569 -10.41739 -10.29890 -10.18515 -10.04461 -9.31916 -8.88654 -8.45910 -8.35386 -7.93941 -6.36580 -4.08322 1.14090 3.42353 3.46875 3.49817 3.64598 3.77888 4.04477 4.55298 4.65828 4.72582 4.76913 4.90280 4.95499 5.03863 5.17811 5.23033 5.25268 5.29916 5.32775 5.38712 5.46606 5.51628 5.51748 5.60346 5.63941 5.66749 5.70907 5.77273 5.80847 5.84059 5.90465 5.93837 6.06939 6.10727 6.14829 6.29377 6.34888 6.45462 6.59724 6.74972 6.88885 6.94429 6.96172 6.97052 7.20242 7.51341 8.03519 8.47280 8.82265 9.60157 11.00480 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.004010 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.819250 B = 6980.339505 C = 8172.815415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.137 3.863 3 N -0.990 5.990 4 C 0.248 3.752 5 C -0.606 4.606 6 H 0.058 0.942 7 C 0.022 3.978 8 N -0.910 5.910 9 Si 1.069 2.931 10 H -0.286 1.286 11 H -0.288 1.288 12 H -0.284 1.284 13 S 2.778 3.222 14 O -0.992 6.992 15 O -0.957 6.957 16 N -1.016 6.016 17 C 0.095 3.905 18 C 0.134 3.866 19 C -0.107 4.107 20 H 0.091 0.909 21 C -0.116 4.116 22 C -0.117 4.117 23 C 0.056 3.944 24 N -0.545 5.545 25 C 0.026 3.974 26 C 0.060 3.940 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.028 0.972 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.030 0.970 45 H 0.071 0.929 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.022 0.978 49 H 0.030 0.970 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -5.801 -12.717 18.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.010 3.990 3 N -0.832 5.832 4 C 0.125 3.875 5 C -0.645 4.645 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.546 5.546 9 Si 0.897 3.103 10 H -0.213 1.213 11 H -0.214 1.214 12 H -0.210 1.210 13 S 2.787 3.213 14 O -0.976 6.976 15 O -0.941 6.941 16 N -0.854 5.854 17 C -0.050 4.050 18 C 0.008 3.992 19 C -0.127 4.127 20 H 0.110 0.890 21 C -0.154 4.154 22 C -0.155 4.155 23 C -0.072 4.072 24 N -0.270 5.270 25 C -0.122 4.122 26 C -0.067 4.067 27 H 0.069 0.931 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.041 0.959 49 H 0.049 0.951 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.781 -3.972 -12.240 16.788 hybrid contribution 1.735 -1.843 -0.781 2.649 sum 12.516 -5.815 -13.021 18.974 Atomic orbital electron populations 1.22270 0.96185 1.00846 1.03889 1.20942 0.95032 0.82219 1.00780 1.57746 1.78408 1.22941 1.24083 1.19120 0.98091 0.90535 0.79725 1.22356 0.95588 1.32934 1.13660 0.92391 1.25767 1.04304 0.94452 0.93710 1.70779 0.99727 1.41221 1.42853 0.83554 0.74127 0.76319 0.76317 1.21270 1.21379 1.20976 1.02205 0.72500 0.73742 0.72852 1.93529 1.66155 1.79114 1.58767 1.93627 1.85791 1.29597 1.85046 1.58236 1.24754 1.41913 1.60454 1.21481 1.02029 0.87974 0.93554 1.21281 0.89489 0.92517 0.95960 1.21706 0.99634 0.96939 0.94451 0.89044 1.21571 0.98047 0.97156 0.98609 1.21578 1.01319 0.97944 0.94654 1.22107 0.92097 0.96228 0.96727 1.61874 1.38676 1.22117 1.04286 1.22343 0.99464 0.98828 0.91576 1.22293 0.98881 0.92483 0.93088 0.93072 0.90261 0.92605 0.92456 0.91297 0.95381 0.96086 0.92310 0.92822 0.91519 0.91303 0.89633 0.90849 0.90811 0.92276 0.91443 0.90785 0.95202 0.91018 0.91349 0.91542 0.95904 0.95134 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.81 37.16 0.36 -2.75 16 2 C 0.14 2.39 6.08 -4.04 -0.02 2.36 16 3 N -0.99 -20.53 2.85 -115.66 -0.33 -20.86 16 4 C 0.25 6.06 4.55 -5.20 -0.02 6.04 16 5 C -0.61 -16.87 8.54 -34.44 -0.29 -17.17 16 6 H 0.06 1.63 6.69 -52.49 -0.35 1.28 16 7 C 0.02 0.63 5.45 -17.82 -0.10 0.53 16 8 N -0.91 -27.04 13.65 55.43 0.76 -26.28 16 9 Si 1.07 25.54 29.91 -169.99 -5.08 20.46 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 S 2.78 56.33 5.90 -107.50 -0.63 55.70 16 14 O -0.99 -21.14 16.07 -57.17 -0.92 -22.06 16 15 O -0.96 -23.15 15.81 -57.17 -0.90 -24.06 16 16 N -1.02 -15.37 3.14 -121.75 -0.38 -15.75 16 17 C 0.10 1.11 9.22 59.85 0.55 1.67 16 18 C 0.13 1.86 4.83 -4.04 -0.02 1.84 16 19 C -0.11 -1.46 2.55 -90.54 -0.23 -1.69 16 20 H 0.09 1.54 7.81 -51.93 -0.41 1.13 16 21 C -0.12 -1.38 5.29 -26.61 -0.14 -1.52 16 22 C -0.12 -1.27 6.09 -26.65 -0.16 -1.43 16 23 C 0.06 0.57 5.46 -3.84 -0.02 0.55 16 24 N -0.55 -6.34 4.91 -242.97 -1.19 -7.53 16 25 C 0.03 0.24 9.63 60.07 0.58 0.82 16 26 C 0.06 0.71 4.28 -3.84 -0.02 0.70 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 1.61 6.53 -51.93 -0.34 1.27 16 29 H 0.05 1.07 8.01 -51.93 -0.42 0.65 16 30 H 0.06 0.85 7.42 -51.93 -0.39 0.47 16 31 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 32 H 0.03 0.73 6.85 -51.93 -0.36 0.37 16 33 H 0.02 0.51 8.00 -51.93 -0.42 0.10 16 34 H 0.27 7.76 7.16 -40.82 -0.29 7.46 16 35 H 0.05 0.59 6.33 -51.93 -0.33 0.26 16 36 H 0.07 0.60 7.92 -51.93 -0.41 0.19 16 37 H 0.07 0.80 7.34 -51.93 -0.38 0.42 16 38 H 0.09 1.35 7.58 -51.93 -0.39 0.95 16 39 H 0.07 0.81 7.94 -51.93 -0.41 0.40 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.65 8.03 -51.93 -0.42 0.23 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.54 8.01 -51.93 -0.42 0.12 16 48 H 0.02 0.19 8.13 -51.93 -0.42 -0.23 16 49 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.08 0.97 5.30 -51.93 -0.28 0.70 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -33.78 393.53 -11.30 -45.08 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -9.01 Total: -0.58 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 0.47 Total: -10.05 kcal Atomic # 7 Polarization: -69.28 SS G_CDS: -1.15 Total: -70.43 kcal Atomic # 8 Polarization: -44.29 SS G_CDS: -1.82 Total: -46.11 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Atomic # 16 Polarization: 56.33 SS G_CDS: -0.63 Total: 55.70 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.78 -11.30 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.602 kcal (2) G-P(sol) polarization free energy of solvation -33.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds