Wall clock time and date at job start Tue Mar 31 2020 17:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46959 * 2 1 4 4 C 1.46498 * 119.99650 * 84.99616 * 3 2 1 5 5 C 1.50695 * 109.47498 * 274.54381 * 4 3 2 6 6 H 1.07999 * 120.00145 * 4.55189 * 5 4 3 7 7 C 1.37879 * 120.00206 * 184.55584 * 5 4 3 8 8 N 1.31520 * 119.99906 * 5.04291 * 7 5 4 9 9 Si 1.86801 * 120.00086 * 185.04571 * 7 5 4 10 10 H 1.48506 * 109.46855 * 269.99546 * 9 7 5 11 11 H 1.48494 * 109.46927 * 29.99476 * 9 7 5 12 12 H 1.48500 * 109.46879 * 149.99799 * 9 7 5 13 13 S 1.65597 * 119.99691 * 265.00043 * 3 2 1 14 14 O 1.42098 * 106.40530 * 28.52267 * 13 3 2 15 15 O 1.42103 * 106.39904 * 161.44038 * 13 3 2 16 16 N 1.65597 * 107.21670 * 274.97740 * 13 3 2 17 17 C 1.46504 * 119.99788 * 94.92270 * 16 13 3 18 18 C 1.46504 * 120.00406 * 274.91902 * 16 13 3 19 19 C 1.53001 * 109.47201 * 266.78293 * 18 16 13 20 20 H 1.09002 * 109.49779 * 53.74885 * 19 18 16 21 21 C 1.53118 * 109.50141 * 173.86372 * 19 18 16 22 22 C 1.53115 * 109.15794 * 177.59619 * 21 19 18 23 23 C 1.53038 * 109.28130 * 302.34827 * 22 21 19 24 24 N 1.46841 * 109.52300 * 59.17577 * 23 22 21 25 25 C 1.46901 * 110.99929 * 174.16135 * 24 23 22 26 26 C 1.46845 * 111.20070 * 298.26272 * 24 23 22 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47033 * 299.99809 * 1 2 3 29 29 H 1.09004 * 109.47111 * 60.00328 * 1 2 3 30 30 H 1.08997 * 109.47033 * 240.00191 * 2 1 3 31 31 H 1.08999 * 109.47014 * 120.00156 * 2 1 3 32 32 H 1.09004 * 109.46777 * 154.54313 * 4 3 2 33 33 H 1.09001 * 109.47130 * 34.55001 * 4 3 2 34 34 H 0.97004 * 119.99977 * 354.88228 * 8 7 5 35 35 H 1.08994 * 109.46928 * 89.99933 * 17 16 13 36 36 H 1.09001 * 109.46642 * 209.99957 * 17 16 13 37 37 H 1.09000 * 109.46978 * 329.99631 * 17 16 13 38 38 H 1.09002 * 109.46423 * 26.78386 * 18 16 13 39 39 H 1.08994 * 109.47025 * 146.77935 * 18 16 13 40 40 H 1.09000 * 109.52346 * 297.50345 * 21 19 18 41 41 H 1.08998 * 109.52159 * 57.69422 * 21 19 18 42 42 H 1.09004 * 109.50524 * 182.40555 * 22 21 19 43 43 H 1.08996 * 109.50531 * 62.29040 * 22 21 19 44 44 H 1.09004 * 109.45844 * 299.16341 * 23 22 21 45 45 H 1.08996 * 109.45481 * 179.19234 * 23 22 21 46 46 H 1.09004 * 109.46949 * 189.06957 * 25 24 23 47 47 H 1.09001 * 109.47296 * 309.06739 * 25 24 23 48 48 H 1.09000 * 109.46887 * 69.07022 * 25 24 23 49 49 H 1.08997 * 109.46137 * 301.72183 * 26 24 23 50 50 H 1.09003 * 109.46207 * 181.75499 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1087 1.2639 5 6 0.8387 2.7381 1.6299 6 1 -0.0359 2.5491 1.0253 7 6 0.7482 3.5555 2.7366 8 7 1.8312 3.8658 3.4152 9 14 -0.9126 4.2220 3.2722 10 1 -1.1644 5.5220 2.5999 11 1 -1.9773 3.2568 2.8980 12 1 -0.9163 4.4171 4.7443 13 16 2.4121 2.1201 -1.4287 14 8 1.5997 1.5200 -2.4282 15 8 2.4199 3.5172 -1.1690 16 7 3.9747 1.7016 -1.7826 17 6 4.2464 0.5657 -2.6670 18 6 5.0856 2.4672 -1.2114 19 6 5.5032 3.5670 -2.1895 20 1 4.6326 4.1658 -2.4571 21 6 6.5578 4.4619 -1.5326 22 6 7.0138 5.5226 -2.5383 23 6 7.5606 4.8310 -3.7892 24 7 6.5141 3.9877 -4.3807 25 6 6.9583 3.4165 -5.6592 26 6 6.0938 2.9321 -3.4505 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.9137 2.8866 1.1537 33 1 2.4611 1.4167 2.0498 34 1 2.6818 3.4614 3.1828 35 1 4.2982 0.9129 -3.6989 36 1 5.1960 0.1081 -2.3895 37 1 3.4471 -0.1692 -2.5706 38 1 4.7700 2.9182 -0.2706 39 1 5.9299 1.8021 -1.0303 40 1 6.1277 4.9500 -0.6581 41 1 7.4119 3.8562 -1.2297 42 1 7.7956 6.1363 -2.0907 43 1 6.1674 6.1527 -2.8115 44 1 8.4155 4.2118 -3.5174 45 1 7.8728 5.5837 -4.5130 46 1 6.1161 2.9312 -6.1525 47 1 7.3445 4.2112 -6.2975 48 1 7.7439 2.6834 -5.4761 49 1 6.9556 2.3218 -3.1804 50 1 5.3407 2.3055 -3.9284 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337090728.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:04 Heat of formation + Delta-G solvation = -103.258681 kcal Electronic energy + Delta-G solvation = -29343.607779 eV Core-core repulsion = 25531.264937 eV Total energy + Delta-G solvation = -3812.342842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.32302 -38.39588 -37.87976 -37.41322 -36.86436 -34.87835 -34.52503 -32.10400 -31.40639 -28.65278 -28.26288 -27.53289 -25.55249 -24.77234 -23.80854 -23.51685 -22.67343 -20.69107 -19.99898 -19.26334 -18.56373 -18.33437 -17.39906 -16.90536 -16.36352 -16.07381 -15.66213 -15.51369 -15.48714 -15.32875 -15.25410 -15.04428 -14.63780 -14.15238 -14.05721 -14.01113 -13.85874 -13.64654 -13.50340 -13.39478 -13.19507 -13.05982 -13.01595 -12.91961 -12.83294 -12.59055 -12.57761 -12.33374 -12.22673 -11.96724 -11.94427 -11.72416 -11.65477 -11.49815 -11.25561 -11.22265 -10.51982 -10.07370 -9.75889 -9.25108 -8.61145 -6.34157 -0.43302 1.51520 1.59248 1.76969 1.97561 2.49326 2.57602 2.97748 3.15948 3.31512 3.64053 3.74954 3.82669 3.86613 4.02773 4.13754 4.28985 4.35353 4.37207 4.42531 4.46805 4.50607 4.53736 4.57867 4.62284 4.66753 4.68698 4.73547 4.78987 4.85470 4.90204 4.91128 4.95862 4.98872 5.00663 5.02378 5.06336 5.16998 5.31743 5.35738 5.42101 5.47478 5.58726 5.85348 5.91261 6.13876 6.17856 6.26312 6.58498 7.40868 8.75713 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014979 B = 0.004010 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.819250 B = 6980.339505 C = 8172.815415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.126 3.874 3 N -0.996 5.996 4 C 0.261 3.739 5 C -0.617 4.617 6 H 0.048 0.952 7 C -0.027 4.027 8 N -0.932 5.932 9 Si 1.107 2.893 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.275 1.275 13 S 2.787 3.213 14 O -1.006 7.006 15 O -1.008 7.008 16 N -1.005 6.005 17 C 0.084 3.916 18 C 0.132 3.868 19 C -0.106 4.106 20 H 0.047 0.953 21 C -0.115 4.115 22 C -0.117 4.117 23 C 0.059 3.941 24 N -0.571 5.571 25 C 0.027 3.973 26 C 0.066 3.934 27 H 0.089 0.911 28 H 0.049 0.951 29 H 0.036 0.964 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.010 0.990 33 H 0.024 0.976 34 H 0.259 0.741 35 H 0.062 0.938 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.076 0.924 48 H 0.035 0.965 49 H 0.052 0.948 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.060 -7.745 -13.754 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.001 3.999 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.656 4.656 6 H 0.066 0.934 7 C -0.226 4.226 8 N -0.570 5.570 9 Si 0.929 3.071 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.200 1.200 13 S 2.797 3.203 14 O -0.989 6.989 15 O -0.991 6.991 16 N -0.846 5.846 17 C -0.060 4.060 18 C 0.006 3.994 19 C -0.127 4.127 20 H 0.066 0.934 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.068 4.068 24 N -0.296 5.296 25 C -0.121 4.121 26 C -0.061 4.061 27 H 0.108 0.892 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.027 0.973 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.132 0.868 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.054 0.946 49 H 0.070 0.930 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.376 -5.947 -13.303 19.118 hybrid contribution 1.288 -1.285 -0.553 1.901 sum 13.664 -7.232 -13.856 20.760 Atomic orbital electron populations 1.22245 0.96761 1.02618 1.01445 1.21282 0.94693 0.80767 1.03205 1.57660 1.79310 1.24059 1.22568 1.18731 0.95977 0.90281 0.81340 1.22699 0.96679 1.32839 1.13369 0.93390 1.27069 1.06672 0.94838 0.94029 1.70879 0.99962 1.42338 1.43804 0.83079 0.71199 0.76321 0.76505 1.20928 1.19399 1.20025 1.01637 0.73534 0.72634 0.72510 1.93496 1.67547 1.79002 1.58904 1.93560 1.86941 1.32988 1.85642 1.57793 1.22892 1.43138 1.60762 1.21844 1.04131 0.86735 0.93289 1.21429 0.89866 0.93264 0.94826 1.21635 0.98643 0.96666 0.95751 0.93448 1.21574 0.98217 0.97464 0.98071 1.21585 1.01071 0.97649 0.95178 1.22112 0.91967 0.96442 0.96327 1.61839 1.39931 1.22625 1.05199 1.22369 0.99766 0.99433 0.90488 1.22190 0.99392 0.92529 0.92023 0.89238 0.93160 0.94453 0.89212 0.89575 0.97262 0.95854 0.93153 0.91983 0.87691 0.90966 0.92422 0.86818 0.92832 0.89864 0.89521 0.93139 0.93779 0.89902 0.91545 0.90556 0.94622 0.92989 0.90552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.04 9.81 71.98 0.71 -5.34 16 2 C 0.13 4.21 6.08 86.38 0.53 4.73 16 3 N -1.00 -41.50 2.85 -519.85 -1.48 -42.99 16 4 C 0.26 13.11 4.55 85.63 0.39 13.50 16 5 C -0.62 -35.23 8.54 25.60 0.22 -35.01 16 6 H 0.05 2.78 6.69 -2.91 -0.02 2.76 16 7 C -0.03 -1.57 5.45 84.65 0.46 -1.11 16 8 N -0.93 -56.71 13.65 21.45 0.29 -56.42 16 9 Si 1.11 51.86 29.91 68.60 2.05 53.91 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 13 S 2.79 114.90 5.90 -56.49 -0.33 114.57 16 14 O -1.01 -42.86 16.07 -128.00 -2.06 -44.92 16 15 O -1.01 -51.43 15.81 -128.00 -2.02 -53.45 16 16 N -1.00 -29.43 3.14 -539.11 -1.69 -31.12 16 17 C 0.08 1.72 9.22 127.77 1.18 2.90 16 18 C 0.13 3.57 4.83 86.38 0.42 3.99 16 19 C -0.11 -2.89 2.55 -10.74 -0.03 -2.92 16 20 H 0.05 1.70 7.81 -2.39 -0.02 1.68 16 21 C -0.11 -2.70 5.29 30.67 0.16 -2.54 16 22 C -0.12 -2.46 6.09 30.65 0.19 -2.28 16 23 C 0.06 1.08 5.46 86.33 0.47 1.55 16 24 N -0.57 -12.31 4.91 -922.61 -4.53 -16.84 16 25 C 0.03 0.43 9.63 127.69 1.23 1.66 16 26 C 0.07 1.44 4.28 86.32 0.37 1.81 16 27 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.04 6.53 -2.39 -0.02 2.03 16 29 H 0.04 1.42 8.01 -2.39 -0.02 1.40 16 30 H 0.09 2.43 7.42 -2.39 -0.02 2.41 16 31 H 0.09 2.59 8.00 -2.39 -0.02 2.57 16 32 H 0.01 0.51 6.85 -2.38 -0.02 0.50 16 33 H 0.02 1.16 8.00 -2.39 -0.02 1.14 16 34 H 0.26 15.59 7.16 -92.71 -0.66 14.93 16 35 H 0.06 1.19 6.33 -2.39 -0.02 1.18 16 36 H 0.10 1.38 7.92 -2.39 -0.02 1.36 16 37 H 0.07 1.45 7.34 -2.39 -0.02 1.43 16 38 H 0.06 1.89 7.58 -2.39 -0.02 1.87 16 39 H 0.11 2.17 7.94 -2.39 -0.02 2.15 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 1.32 8.03 -2.39 -0.02 1.30 16 46 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.08 1.05 8.01 -2.39 -0.02 1.03 16 48 H 0.04 0.48 8.13 -2.39 -0.02 0.46 16 49 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.08 1.69 5.30 -2.39 -0.01 1.68 16 Total: -1.00 -76.30 393.53 -2.49 -78.79 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.00 Total: 17.53 kcal Atomic # 6 Polarization: -25.35 SS G_CDS: 6.29 Total: -19.06 kcal Atomic # 7 Polarization: -139.95 SS G_CDS: -7.41 Total: -147.37 kcal Atomic # 8 Polarization: -94.29 SS G_CDS: -4.08 Total: -98.37 kcal Atomic # 14 Polarization: 51.86 SS G_CDS: 2.05 Total: 53.91 kcal Atomic # 16 Polarization: 114.90 SS G_CDS: -0.33 Total: 114.57 kcal Total: -76.30 -2.49 -78.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337090728.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.467 kcal (2) G-P(sol) polarization free energy of solvation -76.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds