Wall clock time and date at job start Tue Mar 31 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47442 * 2 1 4 4 C 1.46501 * 119.99526 * 274.37833 * 3 2 1 5 5 C 1.50699 * 109.47354 * 296.41279 * 4 3 2 6 6 H 1.08004 * 119.99925 * 3.59847 * 5 4 3 7 7 C 1.37876 * 119.99870 * 183.60277 * 5 4 3 8 8 N 1.31516 * 119.99806 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00293 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 90.00140 * 9 7 5 11 11 H 1.48498 * 109.47199 * 210.00408 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00269 * 9 7 5 13 13 S 1.65596 * 120.00159 * 94.37419 * 3 2 1 14 14 O 1.42096 * 106.40340 * 328.13561 * 13 3 2 15 15 O 1.42094 * 106.40361 * 195.21044 * 13 3 2 16 16 N 1.65607 * 107.21551 * 81.67154 * 13 3 2 17 17 C 1.50172 * 120.53743 * 268.75851 * 16 13 3 18 18 C 1.46232 * 107.53045 * 109.56739 * 17 16 13 19 19 C 1.52527 * 114.27860 * 58.40910 * 18 17 16 20 20 C 1.50123 * 105.41674 * 270.58961 * 19 18 17 21 21 H 1.09001 * 109.20351 * 337.33821 * 20 19 18 22 22 N 1.46902 * 109.20958 * 217.98498 * 20 19 18 23 23 C 1.46901 * 110.99627 * 308.48146 * 22 20 19 24 24 C 1.46899 * 111.00170 * 72.43578 * 22 20 19 25 25 C 1.54706 * 110.90713 * 97.52446 * 20 19 18 26 26 C 1.43434 * 120.53533 * 88.73399 * 16 13 3 27 27 H 1.08997 * 109.46964 * 185.05120 * 1 2 3 28 28 H 1.09001 * 109.46903 * 305.04471 * 1 2 3 29 29 H 1.08997 * 109.47270 * 65.04491 * 1 2 3 30 30 H 1.09002 * 109.47005 * 239.99411 * 2 1 3 31 31 H 1.09008 * 109.47141 * 120.00118 * 2 1 3 32 32 H 1.09001 * 109.47500 * 56.41640 * 4 3 2 33 33 H 1.09003 * 109.46784 * 176.41426 * 4 3 2 34 34 H 0.96999 * 120.00396 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.84482 * 229.07325 * 17 16 13 36 36 H 1.08996 * 109.84259 * 349.99366 * 17 16 13 37 37 H 1.09005 * 108.52182 * 179.64895 * 18 17 16 38 38 H 1.08996 * 108.52856 * 297.16398 * 18 17 16 39 39 H 1.08996 * 110.24942 * 29.56500 * 19 18 17 40 40 H 1.09008 * 110.25053 * 151.61750 * 19 18 17 41 41 H 1.08990 * 109.47170 * 65.94548 * 23 22 20 42 42 H 1.09000 * 109.46422 * 185.94310 * 23 22 20 43 43 H 1.09002 * 109.47132 * 305.93900 * 23 22 20 44 44 H 1.09007 * 109.46984 * 59.99915 * 24 22 20 45 45 H 1.08995 * 109.47160 * 179.97438 * 24 22 20 46 46 H 1.09000 * 109.46951 * 299.99917 * 24 22 20 47 47 H 1.08998 * 109.47627 * 201.11205 * 25 20 19 48 48 H 1.09007 * 109.17187 * 81.56964 * 25 20 19 49 49 H 1.09001 * 108.15516 * 33.30840 * 26 16 13 50 50 H 1.09005 * 108.15544 * 150.08086 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1713 2.1040 -1.2651 5 6 3.2146 1.4209 -2.1111 6 1 3.6721 0.5044 -1.7688 7 6 3.5852 1.9659 -3.3221 8 7 4.4961 1.3700 -4.0602 9 14 2.7936 3.5507 -3.9145 10 1 3.5859 4.7103 -3.4320 11 1 2.7557 3.5604 -5.3990 12 1 1.4098 3.6414 -3.3835 13 16 2.3976 2.1254 1.4299 14 8 1.5204 1.5850 2.4085 15 8 2.4857 3.5153 1.1479 16 7 3.9232 1.6354 1.8480 17 6 4.1254 0.4267 2.7160 18 6 4.6962 -0.6269 1.8779 19 6 6.0182 -0.2538 1.2148 20 6 5.6437 0.3765 -0.0952 21 1 4.6476 0.0401 -0.3831 22 7 6.6087 -0.0355 -1.1233 23 6 7.9876 0.2043 -0.6770 24 6 6.4130 -1.4431 -1.4951 25 6 5.6430 1.9196 0.0147 26 6 5.0729 2.3583 1.3865 27 1 -0.3633 -1.0237 0.0905 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4336 -0.9317 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.2198 2.1110 -1.7969 33 1 2.4818 3.1291 -1.0626 34 1 4.7567 1.7532 -4.9124 35 1 4.8113 0.6654 3.5287 36 1 3.1688 0.0995 3.1232 37 1 4.8557 -1.5116 2.4945 38 1 3.9766 -0.8776 1.0985 39 1 6.5630 0.4587 1.8342 40 1 6.6206 -1.1464 1.0455 41 1 8.2140 -0.4451 0.1685 42 1 8.6763 -0.0100 -1.4943 43 1 8.0957 1.2459 -0.3745 44 1 5.4051 -1.5785 -1.8876 45 1 7.1400 -1.7219 -2.2579 46 1 6.5483 -2.0733 -0.6161 47 1 5.0303 2.3405 -0.7825 48 1 6.6647 2.2861 -0.0859 49 1 4.8074 3.4135 1.3224 50 1 5.8617 2.2533 2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337172188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:14 Heat of formation + Delta-G solvation = -49.634741 kcal Electronic energy + Delta-G solvation = -31341.681675 eV Core-core repulsion = 27531.664142 eV Total energy + Delta-G solvation = -3810.017534 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.39013 -36.84811 -36.20733 -36.12635 -35.31013 -32.62370 -32.38129 -31.16073 -30.11199 -27.16069 -27.06316 -25.82935 -25.29442 -23.00126 -22.13430 -21.57003 -21.04831 -19.14800 -17.98961 -17.37775 -16.86919 -16.64217 -16.05938 -15.48848 -15.06469 -14.84386 -14.50634 -14.15079 -13.91211 -13.86437 -13.36506 -13.19152 -13.09941 -12.64941 -12.39380 -12.35958 -12.21840 -12.02928 -11.97773 -11.85815 -11.78306 -11.54964 -11.43335 -11.37509 -11.17087 -11.15161 -10.83630 -10.75232 -10.62445 -10.56168 -10.50116 -10.15213 -10.10551 -10.04255 -9.81740 -9.25082 -8.69286 -8.46724 -8.02539 -7.51947 -5.97694 -3.97097 1.16764 3.31432 3.35976 3.41894 3.46901 4.01551 4.46637 4.53122 4.76188 4.84990 5.07949 5.24904 5.30129 5.34105 5.40177 5.45895 5.63237 5.67134 5.71533 5.72538 5.73267 5.82560 5.85656 5.92480 5.95239 6.03138 6.07366 6.12550 6.15255 6.23636 6.27184 6.32268 6.39117 6.42308 6.50273 6.60162 6.63714 6.68080 6.77533 6.95608 7.08990 7.17496 7.30594 7.46543 7.69527 7.75137 7.80009 8.55483 9.06281 9.60778 11.11188 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.008798 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.219040 B = 3181.807665 C = 4891.188383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.132 3.868 3 N -0.983 5.983 4 C 0.214 3.786 5 C -0.533 4.533 6 H 0.093 0.907 7 C 0.086 3.914 8 N -0.871 5.871 9 Si 0.854 3.146 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.267 1.267 13 S 2.780 3.220 14 O -0.995 6.995 15 O -0.982 6.982 16 N -1.000 6.000 17 C 0.126 3.874 18 C -0.141 4.141 19 C -0.148 4.148 20 C 0.095 3.905 21 H 0.101 0.899 22 N -0.519 5.519 23 C 0.024 3.976 24 C 0.037 3.963 25 C -0.136 4.136 26 C 0.123 3.877 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.024 0.976 33 H 0.042 0.958 34 H 0.260 0.740 35 H 0.072 0.928 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.057 0.943 43 H 0.064 0.936 44 H 0.071 0.929 45 H 0.057 0.943 46 H 0.010 0.990 47 H 0.105 0.895 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.972 -5.231 10.576 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.824 5.824 4 C 0.091 3.909 5 C -0.572 4.572 6 H 0.111 0.889 7 C -0.119 4.119 8 N -0.507 5.507 9 Si 0.681 3.319 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.192 1.192 13 S 2.789 3.211 14 O -0.979 6.979 15 O -0.967 6.967 16 N -0.838 5.838 17 C 0.002 3.998 18 C -0.180 4.180 19 C -0.187 4.187 20 C -0.013 4.013 21 H 0.119 0.881 22 N -0.240 5.240 23 C -0.125 4.125 24 C -0.111 4.111 25 C -0.175 4.175 26 C -0.005 4.005 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.034 0.966 42 H 0.076 0.924 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.028 0.972 47 H 0.123 0.877 48 H 0.083 0.917 49 H 0.094 0.906 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.446 -4.311 10.456 11.572 hybrid contribution 0.216 0.075 -0.103 0.251 sum 2.662 -4.236 10.353 11.498 Atomic orbital electron populations 1.22197 0.96987 1.01333 1.02335 1.20994 0.93539 0.82690 1.02232 1.57536 1.78719 1.23132 1.23011 1.19585 0.97903 0.92470 0.80942 1.21305 1.21296 1.11714 1.02868 0.88939 1.24735 0.94422 0.96209 0.96517 1.69913 1.29702 1.38908 1.12213 0.87223 0.80916 0.85640 0.78124 1.20100 1.21464 1.19203 1.01922 0.72849 0.73385 0.72895 1.93529 1.63482 1.80858 1.60022 1.93548 1.86661 1.31188 1.85262 1.58132 1.23312 1.40026 1.62333 1.20786 1.02035 0.84427 0.92528 1.20849 0.98298 0.98413 1.00397 1.21806 0.96710 1.00743 0.99479 1.21773 0.97232 0.95293 0.86976 0.88128 1.61954 1.02253 1.19555 1.40270 1.22380 0.91029 1.00812 0.98260 1.22242 1.02897 0.87852 0.98145 1.22832 1.01649 0.95392 0.97672 1.20840 0.87961 0.95390 0.96308 0.92444 0.92581 0.92192 0.89301 0.92512 0.95804 0.94005 0.93009 0.90952 0.89004 0.92110 0.91218 0.91581 0.91918 0.96648 0.92421 0.91735 0.90989 0.92440 0.97164 0.87654 0.91739 0.90620 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.18 5.79 -4.04 -0.02 2.15 16 3 N -0.98 -18.82 2.95 -115.66 -0.34 -19.16 16 4 C 0.21 4.78 4.72 -5.19 -0.02 4.76 16 5 C -0.53 -12.83 7.02 -34.44 -0.24 -13.07 16 6 H 0.09 2.30 5.12 -52.48 -0.27 2.03 16 7 C 0.09 2.22 5.47 -17.82 -0.10 2.12 16 8 N -0.87 -23.80 13.96 55.43 0.77 -23.02 16 9 Si 0.85 20.43 27.40 -169.99 -4.66 15.77 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.27 -6.28 6.65 56.52 0.38 -5.90 16 13 S 2.78 52.47 6.05 -107.50 -0.65 51.82 16 14 O -0.99 -19.32 15.72 -57.17 -0.90 -20.22 16 15 O -0.98 -21.51 15.11 -57.17 -0.86 -22.38 16 16 N -1.00 -15.63 2.94 -116.11 -0.34 -15.97 16 17 C 0.13 1.58 6.08 -5.20 -0.03 1.55 16 18 C -0.14 -1.71 5.20 -30.19 -0.16 -1.87 16 19 C -0.15 -1.95 3.99 -28.40 -0.11 -2.06 16 20 C 0.10 1.56 1.63 -68.24 -0.11 1.45 16 21 H 0.10 1.89 4.38 -51.93 -0.23 1.66 16 22 N -0.52 -8.95 4.94 -243.83 -1.20 -10.16 16 23 C 0.02 0.34 8.87 60.07 0.53 0.87 16 24 C 0.04 0.59 9.34 60.06 0.56 1.16 16 25 C -0.14 -2.36 5.87 -24.84 -0.15 -2.50 16 26 C 0.12 1.90 5.15 -4.67 -0.02 1.87 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.90 7.82 -51.93 -0.41 0.49 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.09 1.54 7.17 -51.93 -0.37 1.16 16 31 H 0.06 0.82 6.86 -51.92 -0.36 0.47 16 32 H 0.02 0.55 7.45 -51.93 -0.39 0.16 16 33 H 0.04 1.00 5.91 -51.93 -0.31 0.69 16 34 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 35 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 36 H 0.09 1.14 6.96 -51.93 -0.36 0.78 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 39 H 0.07 0.82 6.28 -51.93 -0.33 0.50 16 40 H 0.06 0.81 5.34 -51.92 -0.28 0.53 16 41 H 0.02 0.20 6.56 -51.93 -0.34 -0.14 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.91 6.19 -51.93 -0.32 0.59 16 44 H 0.07 1.30 8.10 -51.93 -0.42 0.87 16 45 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.01 0.14 6.62 -51.93 -0.34 -0.20 16 47 H 0.11 2.26 6.05 -51.93 -0.31 1.95 16 48 H 0.06 1.05 6.09 -51.92 -0.32 0.74 16 49 H 0.08 1.25 7.00 -51.93 -0.36 0.89 16 50 H 0.06 0.80 6.88 -51.93 -0.36 0.44 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -29.00 368.99 -10.18 -39.19 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -8.06 Total: 4.34 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.50 Total: -5.78 kcal Atomic # 7 Polarization: -67.19 SS G_CDS: -1.11 Total: -68.31 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -1.76 Total: -42.59 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.66 Total: 15.77 kcal Atomic # 16 Polarization: 52.47 SS G_CDS: -0.65 Total: 51.82 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.00 -10.18 -39.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337172188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.448 kcal (2) G-P(sol) polarization free energy of solvation -29.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds