Wall clock time and date at job start Tue Mar 31 2020 17:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47442 * 2 1 4 4 C 1.46501 * 119.99526 * 274.37833 * 3 2 1 5 5 C 1.50699 * 109.47354 * 296.41279 * 4 3 2 6 6 H 1.08004 * 119.99925 * 3.59847 * 5 4 3 7 7 C 1.37876 * 119.99870 * 183.60277 * 5 4 3 8 8 N 1.31516 * 119.99806 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00293 * 359.97438 * 7 5 4 10 10 H 1.48498 * 109.47242 * 90.00140 * 9 7 5 11 11 H 1.48498 * 109.47199 * 210.00408 * 9 7 5 12 12 H 1.48499 * 109.47145 * 330.00269 * 9 7 5 13 13 S 1.65596 * 120.00159 * 94.37419 * 3 2 1 14 14 O 1.42096 * 106.40340 * 328.13561 * 13 3 2 15 15 O 1.42094 * 106.40361 * 195.21044 * 13 3 2 16 16 N 1.65607 * 107.21551 * 81.67154 * 13 3 2 17 17 C 1.50172 * 120.53743 * 268.75851 * 16 13 3 18 18 C 1.46232 * 107.53045 * 109.56739 * 17 16 13 19 19 C 1.52527 * 114.27860 * 58.40910 * 18 17 16 20 20 C 1.50123 * 105.41674 * 270.58961 * 19 18 17 21 21 H 1.09001 * 109.20351 * 337.33821 * 20 19 18 22 22 N 1.46902 * 109.20958 * 217.98498 * 20 19 18 23 23 C 1.46901 * 110.99627 * 308.48146 * 22 20 19 24 24 C 1.46899 * 111.00170 * 72.43578 * 22 20 19 25 25 C 1.54706 * 110.90713 * 97.52446 * 20 19 18 26 26 C 1.43434 * 120.53533 * 88.73399 * 16 13 3 27 27 H 1.08997 * 109.46964 * 185.05120 * 1 2 3 28 28 H 1.09001 * 109.46903 * 305.04471 * 1 2 3 29 29 H 1.08997 * 109.47270 * 65.04491 * 1 2 3 30 30 H 1.09002 * 109.47005 * 239.99411 * 2 1 3 31 31 H 1.09008 * 109.47141 * 120.00118 * 2 1 3 32 32 H 1.09001 * 109.47500 * 56.41640 * 4 3 2 33 33 H 1.09003 * 109.46784 * 176.41426 * 4 3 2 34 34 H 0.96999 * 120.00396 * 179.97438 * 8 7 5 35 35 H 1.08995 * 109.84482 * 229.07325 * 17 16 13 36 36 H 1.08996 * 109.84259 * 349.99366 * 17 16 13 37 37 H 1.09005 * 108.52182 * 179.64895 * 18 17 16 38 38 H 1.08996 * 108.52856 * 297.16398 * 18 17 16 39 39 H 1.08996 * 110.24942 * 29.56500 * 19 18 17 40 40 H 1.09008 * 110.25053 * 151.61750 * 19 18 17 41 41 H 1.08990 * 109.47170 * 65.94548 * 23 22 20 42 42 H 1.09000 * 109.46422 * 185.94310 * 23 22 20 43 43 H 1.09002 * 109.47132 * 305.93900 * 23 22 20 44 44 H 1.09007 * 109.46984 * 59.99915 * 24 22 20 45 45 H 1.08995 * 109.47160 * 179.97438 * 24 22 20 46 46 H 1.09000 * 109.46951 * 299.99917 * 24 22 20 47 47 H 1.08998 * 109.47627 * 201.11205 * 25 20 19 48 48 H 1.09007 * 109.17187 * 81.56964 * 25 20 19 49 49 H 1.09001 * 108.15516 * 33.30840 * 26 16 13 50 50 H 1.09005 * 108.15544 * 150.08086 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1713 2.1040 -1.2651 5 6 3.2146 1.4209 -2.1111 6 1 3.6721 0.5044 -1.7688 7 6 3.5852 1.9659 -3.3221 8 7 4.4961 1.3700 -4.0602 9 14 2.7936 3.5507 -3.9145 10 1 3.5859 4.7103 -3.4320 11 1 2.7557 3.5604 -5.3990 12 1 1.4098 3.6414 -3.3835 13 16 2.3976 2.1254 1.4299 14 8 1.5204 1.5850 2.4085 15 8 2.4857 3.5153 1.1479 16 7 3.9232 1.6354 1.8480 17 6 4.1254 0.4267 2.7160 18 6 4.6962 -0.6269 1.8779 19 6 6.0182 -0.2538 1.2148 20 6 5.6437 0.3765 -0.0952 21 1 4.6476 0.0401 -0.3831 22 7 6.6087 -0.0355 -1.1233 23 6 7.9876 0.2043 -0.6770 24 6 6.4130 -1.4431 -1.4951 25 6 5.6430 1.9196 0.0147 26 6 5.0729 2.3583 1.3865 27 1 -0.3633 -1.0237 0.0905 28 1 -0.3633 0.5901 0.8414 29 1 -0.3633 0.4336 -0.9317 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.2198 2.1110 -1.7969 33 1 2.4818 3.1291 -1.0626 34 1 4.7567 1.7532 -4.9124 35 1 4.8113 0.6654 3.5287 36 1 3.1688 0.0995 3.1232 37 1 4.8557 -1.5116 2.4945 38 1 3.9766 -0.8776 1.0985 39 1 6.5630 0.4587 1.8342 40 1 6.6206 -1.1464 1.0455 41 1 8.2140 -0.4451 0.1685 42 1 8.6763 -0.0100 -1.4943 43 1 8.0957 1.2459 -0.3745 44 1 5.4051 -1.5785 -1.8876 45 1 7.1400 -1.7219 -2.2579 46 1 6.5483 -2.0733 -0.6161 47 1 5.0303 2.3405 -0.7825 48 1 6.6647 2.2861 -0.0859 49 1 4.8074 3.4135 1.3224 50 1 5.8617 2.2533 2.1315 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337172188.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:14 Heat of formation + Delta-G solvation = -70.677095 kcal Electronic energy + Delta-G solvation = -31342.594140 eV Core-core repulsion = 27531.664142 eV Total energy + Delta-G solvation = -3810.929999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.58032 -38.40546 -37.69158 -37.42685 -36.88588 -34.43902 -33.62582 -32.43422 -31.64933 -28.82686 -28.33293 -27.03471 -26.47698 -24.58975 -23.43778 -22.95357 -22.38707 -20.43018 -19.40281 -18.94818 -18.44120 -18.29941 -17.44636 -16.78270 -16.48094 -16.11661 -15.96150 -15.75724 -15.38649 -15.06538 -14.72311 -14.48744 -14.28790 -14.27606 -13.94282 -13.77678 -13.59511 -13.53114 -13.46250 -13.23010 -13.07427 -13.03947 -12.92431 -12.69704 -12.62920 -12.53060 -12.42607 -12.29028 -12.01946 -11.90894 -11.71639 -11.63070 -11.56489 -11.36507 -11.32361 -10.88399 -10.52130 -9.94342 -9.63432 -8.73033 -8.01307 -5.99523 -0.30585 1.37753 1.44205 1.49190 1.94688 2.47039 2.55573 3.30173 3.31301 3.36363 3.72652 3.92522 4.00450 4.20967 4.24775 4.29321 4.44272 4.45371 4.48281 4.51939 4.55455 4.63770 4.72378 4.74164 4.79032 4.84196 4.85652 4.93652 4.97743 5.01357 5.07906 5.11294 5.13621 5.17132 5.20310 5.28190 5.35653 5.42104 5.44843 5.50580 5.54165 5.64202 5.78092 5.88355 6.01452 6.50994 6.55372 6.58880 7.06864 7.58790 9.08991 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.008995 B = 0.008798 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.219040 B = 3181.807665 C = 4891.188383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.128 3.872 3 N -0.988 5.988 4 C 0.223 3.777 5 C -0.505 4.505 6 H 0.084 0.916 7 C 0.045 3.955 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.260 1.260 13 S 2.787 3.213 14 O -0.999 6.999 15 O -1.017 7.017 16 N -0.995 5.995 17 C 0.122 3.878 18 C -0.139 4.139 19 C -0.138 4.138 20 C 0.103 3.897 21 H 0.072 0.928 22 N -0.555 5.555 23 C 0.028 3.972 24 C 0.046 3.954 25 C -0.133 4.133 26 C 0.125 3.875 27 H 0.086 0.914 28 H 0.048 0.952 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.020 0.980 33 H 0.027 0.973 34 H 0.255 0.745 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.038 0.962 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.057 0.943 46 H 0.035 0.965 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.628 -6.503 13.195 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.002 3.998 3 N -0.827 5.827 4 C 0.098 3.902 5 C -0.544 4.544 6 H 0.101 0.899 7 C -0.156 4.156 8 N -0.543 5.543 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.185 1.185 13 S 2.797 3.203 14 O -0.983 6.983 15 O -1.001 7.001 16 N -0.835 5.835 17 C -0.001 4.001 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.005 4.005 21 H 0.090 0.910 22 N -0.278 5.278 23 C -0.120 4.120 24 C -0.102 4.102 25 C -0.173 4.173 26 C -0.002 4.002 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.053 0.947 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.068 -5.597 13.093 14.566 hybrid contribution 0.043 0.418 -0.856 0.954 sum 3.112 -5.179 12.237 13.647 Atomic orbital electron populations 1.22178 0.95891 1.03025 1.01460 1.21166 0.94459 0.81332 1.02829 1.57484 1.79417 1.24017 1.21822 1.19265 0.96845 0.91894 0.82151 1.21396 1.20223 1.10710 1.02097 0.89869 1.25194 0.95131 0.98041 0.97227 1.70012 1.31510 1.40153 1.12600 0.86638 0.80603 0.83481 0.77618 1.20767 1.21531 1.18461 1.01542 0.73560 0.72612 0.72569 1.93515 1.64277 1.80714 1.59796 1.93500 1.87368 1.33598 1.85679 1.57959 1.21926 1.41249 1.62362 1.21132 1.03218 0.82941 0.92793 1.20808 0.97225 0.99497 1.00268 1.21700 0.97470 1.01026 0.97511 1.21606 0.95818 0.94421 0.88662 0.90996 1.61870 1.03878 1.20279 1.41745 1.22349 0.89356 1.01265 0.98990 1.22092 1.01057 0.87999 0.99061 1.22726 1.01076 0.96281 0.97227 1.20832 0.88681 0.94396 0.96318 0.89494 0.93263 0.93212 0.90485 0.90129 0.96215 0.95506 0.93519 0.87668 0.88586 0.88918 0.92966 0.90071 0.91109 0.94400 0.92544 0.91751 0.93992 0.92388 0.94692 0.92529 0.91035 0.92198 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.88 10.24 71.98 0.74 -4.15 16 2 C 0.13 4.11 5.79 86.38 0.50 4.61 16 3 N -0.99 -37.77 2.95 -519.82 -1.53 -39.30 16 4 C 0.22 10.16 4.72 85.63 0.40 10.57 16 5 C -0.51 -25.00 7.02 25.60 0.18 -24.82 16 6 H 0.08 4.28 5.12 -2.91 -0.01 4.27 16 7 C 0.04 2.39 5.47 84.65 0.46 2.85 16 8 N -0.90 -51.03 13.96 21.45 0.30 -50.73 16 9 Si 0.89 42.91 27.40 68.60 1.88 44.79 16 10 H -0.28 -13.77 7.11 99.48 0.71 -13.06 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.26 -12.14 6.65 99.48 0.66 -11.48 16 13 S 2.79 103.13 6.05 -56.49 -0.34 102.79 16 14 O -1.00 -37.13 15.72 -128.00 -2.01 -39.14 16 15 O -1.02 -44.88 15.11 -128.00 -1.93 -46.81 16 16 N -0.99 -29.04 2.94 -521.26 -1.53 -30.57 16 17 C 0.12 2.56 6.08 83.58 0.51 3.07 16 18 C -0.14 -2.86 5.20 28.35 0.15 -2.72 16 19 C -0.14 -3.14 3.99 29.51 0.12 -3.02 16 20 C 0.10 3.26 1.63 44.57 0.07 3.33 16 21 H 0.07 2.71 4.38 -2.39 -0.01 2.70 16 22 N -0.55 -18.84 4.94 -925.33 -4.57 -23.41 16 23 C 0.03 0.76 8.87 127.69 1.13 1.90 16 24 C 0.05 1.46 9.34 127.69 1.19 2.65 16 25 C -0.13 -4.57 5.87 31.82 0.19 -4.39 16 26 C 0.13 3.66 5.15 87.59 0.45 4.11 16 27 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.05 1.51 7.82 -2.39 -0.02 1.49 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 2.67 7.17 -2.39 -0.02 2.65 16 31 H 0.08 2.20 6.86 -2.38 -0.02 2.18 16 32 H 0.02 0.92 7.45 -2.39 -0.02 0.90 16 33 H 0.03 1.32 5.91 -2.39 -0.01 1.30 16 34 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 35 H 0.11 1.62 8.12 -2.39 -0.02 1.60 16 36 H 0.10 2.01 6.96 -2.39 -0.02 1.99 16 37 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.05 1.29 5.81 -2.39 -0.01 1.27 16 39 H 0.08 1.63 6.28 -2.39 -0.02 1.61 16 40 H 0.07 1.53 5.34 -2.38 -0.01 1.51 16 41 H 0.04 0.84 6.56 -2.39 -0.02 0.83 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.06 1.71 6.19 -2.39 -0.01 1.69 16 44 H 0.04 1.54 8.10 -2.38 -0.02 1.52 16 45 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.03 0.91 6.62 -2.39 -0.02 0.89 16 47 H 0.06 2.51 6.05 -2.39 -0.01 2.49 16 48 H 0.07 2.30 6.09 -2.38 -0.01 2.28 16 49 H 0.06 1.95 7.00 -2.39 -0.02 1.94 16 50 H 0.10 2.21 6.88 -2.38 -0.02 2.19 16 Total: -1.00 -64.57 368.99 -2.76 -67.33 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.89 Total: 21.05 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 6.09 Total: -6.00 kcal Atomic # 7 Polarization: -136.68 SS G_CDS: -7.33 Total: -144.01 kcal Atomic # 8 Polarization: -82.01 SS G_CDS: -3.95 Total: -85.95 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.88 Total: 44.79 kcal Atomic # 16 Polarization: 103.13 SS G_CDS: -0.34 Total: 102.79 kcal Total: -64.57 -2.76 -67.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337172188.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.349 kcal (2) G-P(sol) polarization free energy of solvation -64.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds