Wall clock time and date at job start Tue Mar 31 2020 17:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47070 * 2 1 4 4 C 1.46497 * 120.00384 * 274.99989 * 3 2 1 5 5 C 1.50701 * 109.46928 * 275.00140 * 4 3 2 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00159 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99732 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47078 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47294 * 120.00224 * 9 7 5 12 12 H 1.48503 * 109.47009 * 240.00702 * 9 7 5 13 13 S 1.65599 * 119.99780 * 94.99993 * 3 2 1 14 14 O 1.42104 * 106.40475 * 156.45712 * 13 3 2 15 15 O 1.42108 * 106.40253 * 23.53723 * 13 3 2 16 16 N 1.65601 * 107.22141 * 269.99932 * 13 3 2 17 17 C 1.46497 * 119.99792 * 282.96447 * 16 13 3 18 18 C 1.46500 * 119.99954 * 102.95869 * 16 13 3 19 19 C 1.52996 * 109.46838 * 94.02829 * 18 16 13 20 20 N 1.46903 * 112.85050 * 161.74291 * 19 18 16 21 21 C 1.46908 * 110.99863 * 304.80871 * 20 19 18 22 22 C 1.46897 * 111.00020 * 68.76170 * 20 19 18 23 23 C 1.53783 * 113.61686 * 292.93971 * 19 18 16 24 24 C 1.53782 * 87.17296 * 139.94052 * 23 19 18 25 25 C 1.53786 * 113.61799 * 30.43619 * 19 18 16 26 26 H 1.08998 * 109.47540 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47390 * 300.00084 * 1 2 3 28 28 H 1.09010 * 109.47117 * 59.99726 * 1 2 3 29 29 H 1.08996 * 109.46750 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.46843 * 120.00551 * 2 1 3 31 31 H 1.09001 * 109.46873 * 34.99609 * 4 3 2 32 32 H 1.08995 * 109.47639 * 155.00370 * 4 3 2 33 33 H 0.97000 * 120.00016 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46941 * 274.24344 * 17 16 13 35 35 H 1.08997 * 109.47305 * 34.23812 * 17 16 13 36 36 H 1.08998 * 109.47154 * 154.24679 * 17 16 13 37 37 H 1.08995 * 109.46924 * 334.02864 * 18 16 13 38 38 H 1.09002 * 109.47160 * 214.02506 * 18 16 13 39 39 H 1.09000 * 109.46786 * 66.91482 * 21 20 19 40 40 H 1.09000 * 109.46658 * 186.91117 * 21 20 19 41 41 H 1.08996 * 109.46809 * 306.91378 * 21 20 19 42 42 H 1.09002 * 109.47182 * 59.99681 * 22 20 19 43 43 H 1.09000 * 109.47660 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.47059 * 300.00464 * 22 20 19 45 45 H 1.09004 * 113.61113 * 254.53595 * 23 19 18 46 46 H 1.09000 * 113.61123 * 25.34781 * 23 19 18 47 47 H 1.08993 * 113.61233 * 89.16274 * 24 23 19 48 48 H 1.09005 * 113.61013 * 220.05784 * 24 23 19 49 49 H 1.09000 * 113.61089 * 334.56839 * 25 19 18 50 50 H 1.09001 * 113.61183 * 105.38691 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4948 1.7888 -1.8822 6 1 4.1724 1.1117 -1.3834 7 6 3.8526 2.3606 -3.0847 8 7 3.0277 3.1856 -3.6918 9 14 5.5090 1.9636 -3.8516 10 1 6.2450 1.0156 -2.9771 11 1 5.3014 1.3460 -5.1860 12 1 6.2973 3.2131 -4.0017 13 16 2.4121 2.1201 1.4287 14 8 3.3284 3.1570 1.1051 15 8 2.7095 1.0798 2.3500 16 7 1.0431 2.8641 1.9896 17 6 0.5999 4.1274 1.3946 18 6 0.2752 2.2590 3.0806 19 6 0.7302 2.8531 4.4150 20 7 -0.2423 2.6402 5.4954 21 6 -1.5652 3.1590 5.1227 22 6 -0.3182 1.2200 5.8630 23 6 2.1703 2.4742 4.7990 24 6 2.3359 3.9189 5.2995 25 6 1.2249 4.3052 4.3063 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1803 -1.0755 33 1 3.2796 3.5882 -4.5376 34 1 1.1109 4.9577 1.8822 35 1 0.8358 4.1303 0.3304 36 1 -0.4765 4.2342 1.5285 37 1 0.4405 1.1817 3.0872 38 1 -0.7856 2.4630 2.9349 39 1 -1.9717 2.5638 4.3050 40 1 -2.2335 3.1006 5.9818 41 1 -1.4718 4.1974 4.8048 42 1 0.6604 0.8795 6.2014 43 1 -1.0455 1.0905 6.6644 44 1 -0.6260 0.6361 4.9955 45 1 2.2289 1.7281 5.5915 46 1 2.8012 2.2334 3.9435 47 1 2.0545 4.0541 6.3438 48 1 3.3063 4.3547 5.0617 49 1 1.5978 4.5663 3.3160 50 1 0.5197 5.0373 4.6998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337174897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:42 Heat of formation + Delta-G solvation = -25.558491 kcal Electronic energy + Delta-G solvation = -30142.529609 eV Core-core repulsion = 26333.556100 eV Total energy + Delta-G solvation = -3808.973509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.29664 -36.71688 -36.09763 -35.62669 -35.20428 -34.74548 -32.69358 -30.05373 -28.69866 -28.12325 -26.64312 -25.75031 -24.87256 -23.98810 -23.16175 -21.99121 -21.70299 -18.71414 -18.10539 -17.46360 -16.91058 -16.28036 -16.22217 -16.12995 -15.24815 -14.95015 -14.81807 -14.45129 -14.06553 -13.80832 -13.61398 -13.52916 -13.38473 -13.30237 -12.90390 -12.51368 -12.25498 -12.11868 -12.07971 -11.95089 -11.90217 -11.79418 -11.52300 -11.38074 -11.28409 -11.17831 -11.04007 -10.94073 -10.90353 -10.69038 -10.47869 -10.37881 -10.27717 -10.00449 -9.96381 -9.76508 -9.24893 -8.46992 -8.20301 -8.06258 -6.08874 -4.12586 1.15606 3.29719 3.37473 3.38916 3.43548 3.75016 4.03811 4.42645 4.43075 4.75719 4.88359 4.91311 4.97970 4.99582 5.04168 5.20702 5.26037 5.36147 5.36624 5.40343 5.50048 5.54290 5.57999 5.64742 5.66137 5.69662 5.72181 5.74383 5.85340 5.93584 5.96609 6.05892 6.12564 6.15093 6.17587 6.25067 6.40581 6.44904 6.54624 6.56089 6.73803 6.89238 7.08691 7.20180 7.37890 7.59522 7.89012 8.18088 8.89980 9.52868 10.99778 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020439 B = 0.003982 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.582336 B = 7029.458044 C = 7352.089847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.991 5.991 4 C 0.257 3.743 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.281 1.281 13 S 2.776 3.224 14 O -0.960 6.960 15 O -0.990 6.990 16 N -1.008 6.008 17 C 0.090 3.910 18 C 0.110 3.890 19 C 0.062 3.938 20 N -0.516 5.516 21 C 0.021 3.979 22 C 0.019 3.981 23 C -0.137 4.137 24 C -0.135 4.135 25 C -0.134 4.134 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.036 0.964 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.029 0.971 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.063 0.937 49 H 0.100 0.900 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.922 -1.277 15.611 19.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.135 3.865 5 C -0.567 4.567 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.207 1.207 13 S 2.785 3.215 14 O -0.944 6.944 15 O -0.974 6.974 16 N -0.846 5.846 17 C -0.055 4.055 18 C -0.018 4.018 19 C -0.029 4.029 20 N -0.239 5.239 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.175 4.175 24 C -0.172 4.172 25 C -0.171 4.171 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.047 0.953 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.101 0.899 48 H 0.081 0.919 49 H 0.118 0.882 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.942 -0.880 16.272 19.089 hybrid contribution 0.032 -0.618 -1.471 1.596 sum -9.911 -1.499 14.801 17.875 Atomic orbital electron populations 1.22240 0.97295 1.01339 1.01941 1.21137 0.93023 0.83260 1.03497 1.57766 1.80912 1.21408 1.23206 1.19065 0.97473 0.90954 0.79041 1.21520 1.02030 1.27682 1.05511 0.92165 1.24921 0.97386 0.94797 0.96847 1.69920 1.36060 1.30292 1.17211 0.86472 0.83870 0.78404 0.78915 1.19614 1.20938 1.20740 1.02232 0.73393 0.73333 0.72547 1.93634 1.59136 1.57606 1.84003 1.93492 1.83340 1.57705 1.62854 1.58066 1.46922 1.33850 1.45734 1.21641 1.00397 0.85032 0.98425 1.21635 0.96169 0.97863 0.86175 1.22732 0.92854 0.98128 0.89207 1.62094 1.07342 1.17376 1.37071 1.22408 0.90000 1.00485 0.99860 1.22415 1.02735 0.87753 0.99958 1.23298 0.94682 0.97278 1.02214 1.22764 0.98551 0.96491 0.99402 1.23321 0.98273 0.94627 1.00921 0.92260 0.93572 0.91938 0.89713 0.90660 0.94698 0.94613 0.92731 0.92063 0.90784 0.91370 0.89902 0.90730 0.95258 0.91422 0.91219 0.90862 0.91474 0.95298 0.90977 0.88876 0.89917 0.91862 0.88164 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 10.24 37.16 0.38 -1.99 16 2 C 0.12 2.03 6.40 -4.04 -0.03 2.01 16 3 N -0.99 -20.41 2.82 -115.67 -0.33 -20.74 16 4 C 0.26 6.32 5.10 -5.19 -0.03 6.29 16 5 C -0.53 -14.75 9.38 -34.44 -0.32 -15.07 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 8 N -0.90 -25.81 13.29 55.43 0.74 -25.08 16 9 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 S 2.78 55.17 5.18 -107.50 -0.56 54.62 16 14 O -0.96 -23.02 16.61 -57.17 -0.95 -23.97 16 15 O -0.99 -19.81 12.71 -57.17 -0.73 -20.54 16 16 N -1.01 -15.32 2.39 -121.76 -0.29 -15.61 16 17 C 0.09 1.23 9.34 59.85 0.56 1.79 16 18 C 0.11 1.42 4.37 -4.04 -0.02 1.40 16 19 C 0.06 0.78 0.44 -130.79 -0.06 0.72 16 20 N -0.52 -5.53 4.82 -234.45 -1.13 -6.66 16 21 C 0.02 0.18 8.94 60.07 0.54 0.72 16 22 C 0.02 0.19 9.25 60.06 0.56 0.74 16 23 C -0.14 -1.97 6.88 -25.92 -0.18 -2.14 16 24 C -0.13 -1.73 8.01 -25.83 -0.21 -1.94 16 25 C -0.13 -1.69 6.59 -25.83 -0.17 -1.86 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 30 H 0.08 1.24 6.91 -51.93 -0.36 0.88 16 31 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.04 0.93 6.52 -51.93 -0.34 0.59 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.06 0.80 5.99 -51.93 -0.31 0.48 16 35 H 0.07 1.14 6.99 -51.93 -0.36 0.78 16 36 H 0.07 0.72 7.89 -51.93 -0.41 0.31 16 37 H 0.08 1.12 6.94 -51.93 -0.36 0.76 16 38 H 0.07 0.82 5.78 -51.93 -0.30 0.52 16 39 H 0.03 0.25 6.54 -51.93 -0.34 -0.09 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.61 7.18 -51.93 -0.37 0.23 16 42 H 0.07 0.74 6.45 -51.93 -0.34 0.40 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.03 0.28 7.31 -51.93 -0.38 -0.10 16 45 H 0.07 0.97 6.47 -51.93 -0.34 0.63 16 46 H 0.09 1.59 4.38 -51.93 -0.23 1.37 16 47 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 48 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.10 1.39 4.08 -51.93 -0.21 1.17 16 50 H 0.07 0.77 7.39 -51.93 -0.38 0.39 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -31.94 385.12 -9.90 -41.84 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -8.37 Total: 1.24 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 0.93 Total: -7.66 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.01 Total: -68.08 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -1.68 Total: -44.51 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 55.17 SS G_CDS: -0.56 Total: 54.62 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.94 -9.90 -41.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337174897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.284 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds