Wall clock time and date at job start Tue Mar 31 2020 17:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47070 * 2 1 4 4 C 1.46497 * 120.00384 * 274.99989 * 3 2 1 5 5 C 1.50701 * 109.46928 * 275.00140 * 4 3 2 6 6 H 1.08002 * 120.00004 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00159 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99732 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00336 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47078 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47294 * 120.00224 * 9 7 5 12 12 H 1.48503 * 109.47009 * 240.00702 * 9 7 5 13 13 S 1.65599 * 119.99780 * 94.99993 * 3 2 1 14 14 O 1.42104 * 106.40475 * 156.45712 * 13 3 2 15 15 O 1.42108 * 106.40253 * 23.53723 * 13 3 2 16 16 N 1.65601 * 107.22141 * 269.99932 * 13 3 2 17 17 C 1.46497 * 119.99792 * 282.96447 * 16 13 3 18 18 C 1.46500 * 119.99954 * 102.95869 * 16 13 3 19 19 C 1.52996 * 109.46838 * 94.02829 * 18 16 13 20 20 N 1.46903 * 112.85050 * 161.74291 * 19 18 16 21 21 C 1.46908 * 110.99863 * 304.80871 * 20 19 18 22 22 C 1.46897 * 111.00020 * 68.76170 * 20 19 18 23 23 C 1.53783 * 113.61686 * 292.93971 * 19 18 16 24 24 C 1.53782 * 87.17296 * 139.94052 * 23 19 18 25 25 C 1.53786 * 113.61799 * 30.43619 * 19 18 16 26 26 H 1.08998 * 109.47540 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47390 * 300.00084 * 1 2 3 28 28 H 1.09010 * 109.47117 * 59.99726 * 1 2 3 29 29 H 1.08996 * 109.46750 * 239.99919 * 2 1 3 30 30 H 1.08997 * 109.46843 * 120.00551 * 2 1 3 31 31 H 1.09001 * 109.46873 * 34.99609 * 4 3 2 32 32 H 1.08995 * 109.47639 * 155.00370 * 4 3 2 33 33 H 0.97000 * 120.00016 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.46941 * 274.24344 * 17 16 13 35 35 H 1.08997 * 109.47305 * 34.23812 * 17 16 13 36 36 H 1.08998 * 109.47154 * 154.24679 * 17 16 13 37 37 H 1.08995 * 109.46924 * 334.02864 * 18 16 13 38 38 H 1.09002 * 109.47160 * 214.02506 * 18 16 13 39 39 H 1.09000 * 109.46786 * 66.91482 * 21 20 19 40 40 H 1.09000 * 109.46658 * 186.91117 * 21 20 19 41 41 H 1.08996 * 109.46809 * 306.91378 * 21 20 19 42 42 H 1.09002 * 109.47182 * 59.99681 * 22 20 19 43 43 H 1.09000 * 109.47660 * 180.02562 * 22 20 19 44 44 H 1.09005 * 109.47059 * 300.00464 * 22 20 19 45 45 H 1.09004 * 113.61113 * 254.53595 * 23 19 18 46 46 H 1.09000 * 113.61123 * 25.34781 * 23 19 18 47 47 H 1.08993 * 113.61233 * 89.16274 * 24 23 19 48 48 H 1.09005 * 113.61013 * 220.05784 * 24 23 19 49 49 H 1.09000 * 113.61089 * 334.56839 * 25 19 18 50 50 H 1.09001 * 113.61183 * 105.38691 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 3.4948 1.7888 -1.8822 6 1 4.1724 1.1117 -1.3834 7 6 3.8526 2.3606 -3.0847 8 7 3.0277 3.1856 -3.6918 9 14 5.5090 1.9636 -3.8516 10 1 6.2450 1.0156 -2.9771 11 1 5.3014 1.3460 -5.1860 12 1 6.2973 3.2131 -4.0017 13 16 2.4121 2.1201 1.4287 14 8 3.3284 3.1570 1.1051 15 8 2.7095 1.0798 2.3500 16 7 1.0431 2.8641 1.9896 17 6 0.5999 4.1274 1.3946 18 6 0.2752 2.2590 3.0806 19 6 0.7302 2.8531 4.4150 20 7 -0.2423 2.6402 5.4954 21 6 -1.5652 3.1590 5.1227 22 6 -0.3182 1.2200 5.8630 23 6 2.1703 2.4742 4.7990 24 6 2.3359 3.9189 5.2995 25 6 1.2249 4.3052 4.3063 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3618 1.8097 -1.9453 32 1 2.0923 3.1803 -1.0755 33 1 3.2796 3.5882 -4.5376 34 1 1.1109 4.9577 1.8822 35 1 0.8358 4.1303 0.3304 36 1 -0.4765 4.2342 1.5285 37 1 0.4405 1.1817 3.0872 38 1 -0.7856 2.4630 2.9349 39 1 -1.9717 2.5638 4.3050 40 1 -2.2335 3.1006 5.9818 41 1 -1.4718 4.1974 4.8048 42 1 0.6604 0.8795 6.2014 43 1 -1.0455 1.0905 6.6644 44 1 -0.6260 0.6361 4.9955 45 1 2.2289 1.7281 5.5915 46 1 2.8012 2.2334 3.9435 47 1 2.0545 4.0541 6.3438 48 1 3.3063 4.3547 5.0617 49 1 1.5978 4.5663 3.3160 50 1 0.5197 5.0373 4.6998 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337174897.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:42 Heat of formation + Delta-G solvation = -47.825118 kcal Electronic energy + Delta-G solvation = -30143.495163 eV Core-core repulsion = 26333.556100 eV Total energy + Delta-G solvation = -3809.939062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28893 -38.36226 -37.73008 -36.90916 -36.66627 -35.73013 -34.74057 -31.59836 -29.76514 -28.88682 -28.53497 -26.79336 -25.89602 -24.98296 -24.94482 -23.26618 -22.96195 -20.05379 -19.25372 -19.07605 -18.44107 -18.23893 -17.53068 -17.22707 -16.77941 -16.16650 -15.92214 -15.74723 -15.42102 -14.89975 -14.89376 -14.68591 -14.60320 -14.54146 -14.37449 -13.84181 -13.74724 -13.61720 -13.38394 -13.23502 -13.08113 -12.82328 -12.79440 -12.74738 -12.72995 -12.72202 -12.44826 -12.43789 -12.20820 -12.16973 -12.00224 -11.76540 -11.73947 -11.57537 -11.30791 -10.97396 -10.62650 -10.34922 -9.83679 -9.06353 -8.22776 -6.34314 -0.39266 1.36170 1.38840 1.50206 1.97677 2.37162 2.49392 2.94265 3.08047 3.34430 3.44655 3.70330 3.84471 3.88035 3.96046 3.99974 4.26287 4.36187 4.39913 4.41863 4.46634 4.51662 4.57724 4.61220 4.66624 4.71499 4.76130 4.80830 4.88556 4.93553 4.96802 5.00119 5.02893 5.06167 5.10015 5.15060 5.15621 5.19896 5.36064 5.36183 5.45249 5.47468 5.57495 5.69974 5.95183 6.09108 6.13114 6.19658 6.73465 7.34525 8.84879 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.020439 B = 0.003982 C = 0.003808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.582336 B = 7029.458044 C = 7352.089847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.999 5.999 4 C 0.274 3.726 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.272 1.272 11 H -0.268 1.268 12 H -0.278 1.278 13 S 2.786 3.214 14 O -1.010 7.010 15 O -0.996 6.996 16 N -0.996 5.996 17 C 0.086 3.914 18 C 0.106 3.894 19 C 0.073 3.927 20 N -0.519 5.519 21 C 0.018 3.982 22 C 0.017 3.983 23 C -0.151 4.151 24 C -0.132 4.132 25 C -0.133 4.133 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.028 0.972 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.035 0.965 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.029 0.971 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.097 0.903 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.870 -1.580 16.798 21.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.839 5.839 4 C 0.150 3.850 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.193 1.193 12 H -0.203 1.203 13 S 2.796 3.204 14 O -0.993 6.993 15 O -0.980 6.980 16 N -0.837 5.837 17 C -0.059 4.059 18 C -0.022 4.022 19 C -0.019 4.019 20 N -0.242 5.242 21 C -0.130 4.130 22 C -0.131 4.131 23 C -0.189 4.189 24 C -0.169 4.169 25 C -0.170 4.170 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.046 0.954 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.126 0.874 37 H 0.096 0.904 38 H 0.122 0.878 39 H 0.054 0.946 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.072 0.928 49 H 0.103 0.897 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.900 -1.212 17.466 21.170 hybrid contribution 0.592 -0.545 -1.727 1.906 sum -11.308 -1.757 15.739 19.459 Atomic orbital electron populations 1.22152 0.94323 1.03304 1.02044 1.21375 0.95556 0.81501 1.03314 1.57690 1.81564 1.22670 1.22008 1.18601 0.95761 0.90246 0.80353 1.21843 1.03343 1.27719 1.06093 0.93420 1.25694 1.00752 0.94663 0.97331 1.69997 1.37574 1.30861 1.17659 0.85589 0.79791 0.78291 0.78572 1.19635 1.19275 1.20346 1.01658 0.73831 0.72742 0.72185 1.93564 1.61853 1.59162 1.84742 1.93478 1.83912 1.58002 1.62609 1.57635 1.45937 1.34032 1.46065 1.21811 1.02869 0.84255 0.96963 1.21879 0.97285 0.97514 0.85487 1.22581 0.92321 0.97543 0.89445 1.62117 1.08064 1.18101 1.35938 1.22509 0.88987 1.00614 1.00877 1.22477 1.02858 0.87125 1.00631 1.23284 0.96001 0.98312 1.01320 1.22777 0.98448 0.95416 1.00298 1.23270 0.98431 0.95267 1.00061 0.89340 0.92295 0.92935 0.90861 0.89891 0.95362 0.96499 0.92300 0.91484 0.93104 0.87444 0.90398 0.87773 0.94633 0.89833 0.90898 0.91820 0.89470 0.95228 0.90566 0.91992 0.88465 0.92766 0.89694 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 10.24 71.98 0.74 -3.47 16 2 C 0.11 3.73 6.40 86.38 0.55 4.28 16 3 N -1.00 -42.04 2.82 -519.87 -1.47 -43.51 16 4 C 0.27 13.96 5.10 85.63 0.44 14.40 16 5 C -0.55 -31.65 9.38 25.60 0.24 -31.41 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.02 0.88 5.46 84.66 0.46 1.34 16 8 N -0.92 -53.85 13.29 21.45 0.28 -53.56 16 9 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 S 2.79 113.33 5.18 -56.49 -0.29 113.04 16 14 O -1.01 -50.61 16.61 -128.00 -2.13 -52.73 16 15 O -1.00 -40.57 12.71 -128.00 -1.63 -42.19 16 16 N -1.00 -29.59 2.39 -539.14 -1.29 -30.88 16 17 C 0.09 2.26 9.34 127.77 1.19 3.45 16 18 C 0.11 2.51 4.37 86.38 0.38 2.89 16 19 C 0.07 1.69 0.44 4.05 0.00 1.69 16 20 N -0.52 -9.58 4.82 -895.65 -4.31 -13.90 16 21 C 0.02 0.24 8.94 127.69 1.14 1.38 16 22 C 0.02 0.28 9.25 127.69 1.18 1.46 16 23 C -0.15 -4.28 6.88 31.12 0.21 -4.07 16 24 C -0.13 -3.30 8.01 31.18 0.25 -3.05 16 25 C -0.13 -3.14 6.59 31.18 0.21 -2.93 16 26 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.06 1.39 8.02 -2.39 -0.02 1.37 16 28 H 0.05 1.49 8.14 -2.38 -0.02 1.48 16 29 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.08 2.71 6.91 -2.39 -0.02 2.69 16 31 H 0.03 1.46 8.11 -2.39 -0.02 1.44 16 32 H 0.02 0.93 6.52 -2.39 -0.02 0.91 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.07 1.71 5.99 -2.38 -0.01 1.69 16 35 H 0.05 1.59 6.99 -2.39 -0.02 1.58 16 36 H 0.11 1.97 7.89 -2.39 -0.02 1.95 16 37 H 0.08 1.97 6.94 -2.39 -0.02 1.95 16 38 H 0.10 1.90 5.78 -2.39 -0.01 1.88 16 39 H 0.04 0.45 6.54 -2.39 -0.02 0.43 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 0.97 7.18 -2.39 -0.02 0.95 16 42 H 0.06 1.18 6.45 -2.39 -0.02 1.16 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.03 0.49 7.31 -2.38 -0.02 0.47 16 45 H 0.08 2.02 6.47 -2.38 -0.02 2.01 16 46 H 0.06 2.17 4.38 -2.39 -0.01 2.16 16 47 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 49 H 0.08 2.29 4.08 -2.39 -0.01 2.28 16 50 H 0.09 1.72 7.39 -2.39 -0.02 1.70 16 Total: -1.00 -70.57 385.12 -0.89 -71.46 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.92 Total: 19.29 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 6.99 Total: -14.03 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -6.79 Total: -141.84 kcal Atomic # 8 Polarization: -91.17 SS G_CDS: -3.75 Total: -94.93 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 113.33 SS G_CDS: -0.29 Total: 113.04 kcal Total: -70.57 -0.89 -71.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337174897.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.632 kcal (2) G-P(sol) polarization free energy of solvation -70.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds