Wall clock time and date at job start Tue Mar 31 2020 17:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.47041 * 2 1 4 4 C 1.46503 * 120.00218 * 289.38967 * 3 2 1 5 5 C 1.50703 * 109.46776 * 273.46788 * 4 3 2 6 6 H 1.07994 * 120.00481 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99728 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47078 * 59.99688 * 9 7 5 11 11 H 1.48503 * 109.47129 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46820 * 300.00092 * 9 7 5 13 13 S 1.65600 * 120.00130 * 109.39205 * 3 2 1 14 14 O 1.42106 * 106.40473 * 140.06552 * 13 3 2 15 15 O 1.42105 * 106.39998 * 7.14712 * 13 3 2 16 16 N 1.65601 * 107.22122 * 253.60875 * 13 3 2 17 17 C 1.46494 * 119.99870 * 66.53994 * 16 13 3 18 18 H 1.09005 * 109.47746 * 332.10784 * 17 16 13 19 19 C 1.53004 * 109.46891 * 92.10763 * 17 16 13 20 20 C 1.52998 * 109.47191 * 212.10567 * 17 16 13 21 21 N 1.46899 * 109.47279 * 57.76757 * 20 17 16 22 22 C 1.46845 * 110.99933 * 201.56480 * 21 20 17 23 23 C 1.53035 * 109.52080 * 174.15921 * 22 21 20 24 24 C 1.53115 * 109.28135 * 59.17677 * 23 22 21 25 25 C 1.53116 * 109.16375 * 302.34419 * 24 23 22 26 26 C 1.46847 * 111.00195 * 77.35105 * 21 20 17 27 27 H 1.09001 * 109.46675 * 291.76763 * 1 2 3 28 28 H 1.08998 * 109.46916 * 51.76663 * 1 2 3 29 29 H 1.09000 * 109.47043 * 171.76501 * 1 2 3 30 30 H 1.09003 * 109.46661 * 239.99938 * 2 1 3 31 31 H 1.08999 * 109.46682 * 120.00211 * 2 1 3 32 32 H 1.08997 * 109.46949 * 33.46334 * 4 3 2 33 33 H 1.09002 * 109.47489 * 153.47197 * 4 3 2 34 34 H 0.96998 * 120.00069 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00293 * 246.54972 * 16 13 3 36 36 H 1.09005 * 109.46817 * 179.97438 * 19 17 16 37 37 H 1.08994 * 109.47165 * 299.99655 * 19 17 16 38 38 H 1.08994 * 109.47221 * 59.99950 * 19 17 16 39 39 H 1.09012 * 109.47205 * 177.76292 * 20 17 16 40 40 H 1.09002 * 109.47233 * 297.76212 * 20 17 16 41 41 H 1.08996 * 109.46362 * 294.17082 * 22 21 20 42 42 H 1.08994 * 109.46409 * 54.14255 * 22 21 20 43 43 H 1.09004 * 109.50688 * 299.23588 * 23 22 21 44 44 H 1.09005 * 109.50542 * 179.12199 * 23 22 21 45 45 H 1.09003 * 109.52606 * 182.43745 * 24 23 22 46 46 H 1.09007 * 109.52245 * 62.25380 * 24 23 22 47 47 H 1.08996 * 109.50717 * 297.71524 * 25 24 23 48 48 H 1.09002 * 109.50984 * 177.59162 * 25 24 23 49 49 H 1.09001 * 109.46461 * 305.86036 * 26 21 20 50 50 H 1.09002 * 109.46080 * 65.82711 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.8654 2.2122 -1.1968 5 6 3.0360 1.9858 -2.1184 6 1 3.8161 1.2926 -1.8404 7 6 3.1112 2.6637 -3.3168 8 7 2.1610 3.5075 -3.6556 9 14 4.5618 2.3826 -4.4596 10 1 4.6118 0.9516 -4.8532 11 1 4.4068 3.2251 -5.6726 12 1 5.8203 2.7481 -3.7611 13 16 2.7433 2.0031 1.3528 14 8 3.8353 2.7900 0.8971 15 8 2.8911 0.9212 2.2622 16 7 1.6674 3.0535 2.0466 17 6 0.4187 2.5487 2.6227 18 1 0.1247 1.6338 2.1081 19 6 0.6259 2.2532 4.1096 20 6 -0.6801 3.6009 2.4602 21 7 -0.8421 3.9237 1.0363 22 6 -1.4778 5.2361 0.8633 23 6 -1.4981 5.6026 -0.6223 24 6 -2.2735 4.5331 -1.3964 25 6 -1.6196 3.1688 -1.1605 26 6 -1.5958 2.8728 0.3408 27 1 -0.3633 0.3811 0.9544 28 1 -0.3633 0.6360 -0.8072 29 1 -0.3633 -1.0171 -0.1472 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.9419 1.9439 -1.7098 33 1 1.8286 3.2625 -0.9076 34 1 2.2140 3.9847 -4.4984 35 1 1.8639 4.0031 2.0714 36 1 -0.3033 1.8780 4.5384 37 1 1.4087 1.5036 4.2254 38 1 0.9198 3.1679 4.6243 39 1 -1.6187 3.2098 2.8531 40 1 -0.4042 4.5019 3.0080 41 1 -2.4992 5.1976 1.2419 42 1 -0.9142 5.9882 1.4153 43 1 -0.4763 5.6549 -0.9983 44 1 -1.9840 6.5697 -0.7520 45 1 -2.2536 4.7674 -2.4608 46 1 -3.3059 4.5075 -1.0474 47 1 -0.5998 3.1827 -1.5449 48 1 -2.1924 2.3969 -1.6746 49 1 -1.1179 1.9084 0.5133 50 1 -2.6167 2.8453 0.7218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337179853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:49 Heat of formation + Delta-G solvation = -83.248661 kcal Electronic energy + Delta-G solvation = -30561.397427 eV Core-core repulsion = 26749.922285 eV Total energy + Delta-G solvation = -3811.475143 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.04914 -36.64433 -36.06225 -35.94627 -35.01481 -32.69288 -32.55487 -30.69976 -29.84244 -29.66768 -26.59928 -26.22853 -23.35034 -23.00825 -22.67764 -21.48268 -20.83276 -19.42069 -18.67408 -17.33391 -16.59288 -16.26067 -16.04250 -15.72436 -15.21503 -14.70621 -14.32071 -14.27053 -14.03245 -13.70714 -13.46593 -13.34646 -13.21462 -12.91923 -12.73930 -12.65790 -12.29338 -12.00508 -11.92741 -11.78985 -11.69470 -11.45153 -11.29641 -11.21231 -11.11986 -10.93546 -10.88081 -10.82813 -10.66716 -10.46874 -10.28263 -10.23816 -10.13913 -9.95863 -9.88454 -9.61339 -9.09489 -8.33703 -8.10146 -7.90669 -5.96777 -3.98430 1.44385 3.39031 3.42087 3.48046 3.64599 3.98297 4.28861 4.53130 4.76324 5.02449 5.08777 5.15121 5.16547 5.25470 5.35275 5.39383 5.42154 5.47532 5.53286 5.58415 5.61977 5.70936 5.72228 5.75626 5.78593 5.81859 5.93208 5.95235 6.00865 6.10912 6.18990 6.24749 6.31462 6.36229 6.43918 6.50712 6.55997 6.67086 6.73035 6.86547 7.26643 7.29016 7.40427 7.47769 7.61818 7.78943 8.02233 8.34331 9.03524 9.65409 11.10881 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.006477 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.122968 B = 4322.089673 C = 5891.910373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.267 3.733 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 S 2.782 3.218 14 O -0.970 6.970 15 O -1.006 7.006 16 N -1.110 6.110 17 C 0.160 3.840 18 H 0.081 0.919 19 C -0.172 4.172 20 C 0.051 3.949 21 N -0.525 5.525 22 C 0.062 3.938 23 C -0.118 4.118 24 C -0.114 4.114 25 C -0.126 4.126 26 C 0.048 3.952 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.037 0.963 33 H 0.036 0.964 34 H 0.261 0.739 35 H 0.412 0.588 36 H 0.060 0.940 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.076 0.924 41 H 0.024 0.976 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.046 0.954 47 H 0.098 0.902 48 H 0.058 0.942 49 H 0.086 0.914 50 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 0.179 11.134 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.010 4.010 3 N -0.832 5.832 4 C 0.145 3.855 5 C -0.564 4.564 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.201 1.201 13 S 2.790 3.210 14 O -0.954 6.954 15 O -0.990 6.990 16 N -0.868 5.868 17 C 0.051 3.949 18 H 0.098 0.902 19 C -0.231 4.231 20 C -0.079 4.079 21 N -0.249 5.249 22 C -0.066 4.066 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.163 4.163 26 C -0.080 4.080 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.245 0.755 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.042 0.958 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.065 0.935 47 H 0.116 0.884 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -10.544 -0.065 11.080 15.295 hybrid contribution -0.449 0.455 -0.580 0.863 sum -10.993 0.389 10.501 15.207 Atomic orbital electron populations 1.22418 0.97486 1.01629 1.01570 1.21114 0.93389 0.83516 1.02974 1.57654 1.76835 1.19910 1.28810 1.18948 0.97133 0.88833 0.80545 1.21535 1.07216 1.24786 1.02853 0.92447 1.24867 0.96141 0.95073 0.97793 1.69903 1.32918 1.27295 1.23270 0.86672 0.83484 0.77979 0.79955 1.20392 1.21389 1.20148 1.01865 0.73543 0.72875 0.72760 1.93638 1.50027 1.70740 1.80960 1.93498 1.86268 1.55182 1.64047 1.55889 1.33867 1.22118 1.74908 1.20649 0.84116 0.96691 0.93433 0.90159 1.22337 1.02499 1.02613 0.95694 1.22397 0.97042 0.99075 0.89356 1.61757 1.50705 1.02114 1.10336 1.22052 0.96163 0.90952 0.97436 1.21578 1.02249 0.97533 0.94201 1.21490 0.97849 0.95656 1.00218 1.21707 1.03862 0.96123 0.94617 1.22408 0.94726 0.95785 0.95044 0.93363 0.91093 0.92384 0.90635 0.90303 0.94542 0.94577 0.92951 0.75495 0.92148 0.90755 0.92303 0.94021 0.90542 0.95810 0.91223 0.90081 0.92341 0.91880 0.93492 0.88364 0.92296 0.89579 0.96136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.84 37.16 0.33 -2.07 16 2 C 0.12 2.00 6.54 -4.04 -0.03 1.97 16 3 N -0.99 -19.90 2.89 -115.66 -0.33 -20.23 16 4 C 0.27 6.35 4.65 -5.19 -0.02 6.32 16 5 C -0.52 -14.50 9.39 -34.44 -0.32 -14.82 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.23 13.29 55.43 0.74 -24.49 16 9 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 S 2.78 55.25 5.93 -107.50 -0.64 54.62 16 14 O -0.97 -23.71 17.71 -57.17 -1.01 -24.73 16 15 O -1.01 -20.39 15.31 -57.17 -0.88 -21.27 16 16 N -1.11 -17.05 5.34 -4.89 -0.03 -17.08 16 17 C 0.16 2.02 2.81 -67.93 -0.19 1.83 16 18 H 0.08 1.06 4.79 -51.93 -0.25 0.81 16 19 C -0.17 -1.92 9.51 37.16 0.35 -1.56 16 20 C 0.05 0.56 4.60 -3.83 -0.02 0.55 16 21 N -0.52 -6.83 4.36 -234.67 -1.02 -7.85 16 22 C 0.06 0.74 5.42 -3.84 -0.02 0.72 16 23 C -0.12 -1.54 6.09 -26.65 -0.16 -1.71 16 24 C -0.11 -1.52 6.00 -26.61 -0.16 -1.68 16 25 C -0.13 -1.84 5.87 -26.65 -0.16 -2.00 16 26 C 0.05 0.63 5.27 -3.83 -0.02 0.61 16 27 H 0.05 0.61 4.57 -51.93 -0.24 0.37 16 28 H 0.07 1.07 6.08 -51.93 -0.32 0.76 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.29 6.61 -51.93 -0.34 0.95 16 32 H 0.04 0.87 5.56 -51.93 -0.29 0.58 16 33 H 0.04 0.93 8.01 -51.93 -0.42 0.51 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.41 5.94 8.81 -34.47 -0.30 5.63 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.97 7.33 -51.93 -0.38 0.59 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.04 0.41 7.98 -51.92 -0.41 0.00 16 40 H 0.08 0.77 7.76 -51.93 -0.40 0.36 16 41 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.07 0.78 7.92 -51.93 -0.41 0.36 16 43 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.56 8.14 -51.92 -0.42 0.13 16 47 H 0.10 1.83 6.28 -51.93 -0.33 1.50 16 48 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.09 1.14 3.15 -51.93 -0.16 0.98 16 50 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 386.65 15.07 5.83 5.83 Total: -1.00 -31.93 386.65 -11.33 -43.26 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.45 Total: 5.22 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.52 Total: -10.19 kcal Atomic # 7 Polarization: -69.01 SS G_CDS: -0.65 Total: -69.66 kcal Atomic # 8 Polarization: -44.11 SS G_CDS: -1.89 Total: -46.00 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.64 Total: 54.62 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.93 -11.33 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337179853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.987 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds