Wall clock time and date at job start Tue Mar 31 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46492 * 109.47041 * 2 1 4 4 C 1.46503 * 120.00218 * 289.38967 * 3 2 1 5 5 C 1.50703 * 109.46776 * 273.46788 * 4 3 2 6 6 H 1.07994 * 120.00481 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99728 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00025 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00061 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47078 * 59.99688 * 9 7 5 11 11 H 1.48503 * 109.47129 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46820 * 300.00092 * 9 7 5 13 13 S 1.65600 * 120.00130 * 109.39205 * 3 2 1 14 14 O 1.42106 * 106.40473 * 140.06552 * 13 3 2 15 15 O 1.42105 * 106.39998 * 7.14712 * 13 3 2 16 16 N 1.65601 * 107.22122 * 253.60875 * 13 3 2 17 17 C 1.46494 * 119.99870 * 66.53994 * 16 13 3 18 18 H 1.09005 * 109.47746 * 332.10784 * 17 16 13 19 19 C 1.53004 * 109.46891 * 92.10763 * 17 16 13 20 20 C 1.52998 * 109.47191 * 212.10567 * 17 16 13 21 21 N 1.46899 * 109.47279 * 57.76757 * 20 17 16 22 22 C 1.46845 * 110.99933 * 201.56480 * 21 20 17 23 23 C 1.53035 * 109.52080 * 174.15921 * 22 21 20 24 24 C 1.53115 * 109.28135 * 59.17677 * 23 22 21 25 25 C 1.53116 * 109.16375 * 302.34419 * 24 23 22 26 26 C 1.46847 * 111.00195 * 77.35105 * 21 20 17 27 27 H 1.09001 * 109.46675 * 291.76763 * 1 2 3 28 28 H 1.08998 * 109.46916 * 51.76663 * 1 2 3 29 29 H 1.09000 * 109.47043 * 171.76501 * 1 2 3 30 30 H 1.09003 * 109.46661 * 239.99938 * 2 1 3 31 31 H 1.08999 * 109.46682 * 120.00211 * 2 1 3 32 32 H 1.08997 * 109.46949 * 33.46334 * 4 3 2 33 33 H 1.09002 * 109.47489 * 153.47197 * 4 3 2 34 34 H 0.96998 * 120.00069 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00293 * 246.54972 * 16 13 3 36 36 H 1.09005 * 109.46817 * 179.97438 * 19 17 16 37 37 H 1.08994 * 109.47165 * 299.99655 * 19 17 16 38 38 H 1.08994 * 109.47221 * 59.99950 * 19 17 16 39 39 H 1.09012 * 109.47205 * 177.76292 * 20 17 16 40 40 H 1.09002 * 109.47233 * 297.76212 * 20 17 16 41 41 H 1.08996 * 109.46362 * 294.17082 * 22 21 20 42 42 H 1.08994 * 109.46409 * 54.14255 * 22 21 20 43 43 H 1.09004 * 109.50688 * 299.23588 * 23 22 21 44 44 H 1.09005 * 109.50542 * 179.12199 * 23 22 21 45 45 H 1.09003 * 109.52606 * 182.43745 * 24 23 22 46 46 H 1.09007 * 109.52245 * 62.25380 * 24 23 22 47 47 H 1.08996 * 109.50717 * 297.71524 * 25 24 23 48 48 H 1.09002 * 109.50984 * 177.59162 * 25 24 23 49 49 H 1.09001 * 109.46461 * 305.86036 * 26 21 20 50 50 H 1.09002 * 109.46080 * 65.82711 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.8654 2.2122 -1.1968 5 6 3.0360 1.9858 -2.1184 6 1 3.8161 1.2926 -1.8404 7 6 3.1112 2.6637 -3.3168 8 7 2.1610 3.5075 -3.6556 9 14 4.5618 2.3826 -4.4596 10 1 4.6118 0.9516 -4.8532 11 1 4.4068 3.2251 -5.6726 12 1 5.8203 2.7481 -3.7611 13 16 2.7433 2.0031 1.3528 14 8 3.8353 2.7900 0.8971 15 8 2.8911 0.9212 2.2622 16 7 1.6674 3.0535 2.0466 17 6 0.4187 2.5487 2.6227 18 1 0.1247 1.6338 2.1081 19 6 0.6259 2.2532 4.1096 20 6 -0.6801 3.6009 2.4602 21 7 -0.8421 3.9237 1.0363 22 6 -1.4778 5.2361 0.8633 23 6 -1.4981 5.6026 -0.6223 24 6 -2.2735 4.5331 -1.3964 25 6 -1.6196 3.1688 -1.1605 26 6 -1.5958 2.8728 0.3408 27 1 -0.3633 0.3811 0.9544 28 1 -0.3633 0.6360 -0.8072 29 1 -0.3633 -1.0171 -0.1472 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 0.9419 1.9439 -1.7098 33 1 1.8286 3.2625 -0.9076 34 1 2.2140 3.9847 -4.4984 35 1 1.8639 4.0031 2.0714 36 1 -0.3033 1.8780 4.5384 37 1 1.4087 1.5036 4.2254 38 1 0.9198 3.1679 4.6243 39 1 -1.6187 3.2098 2.8531 40 1 -0.4042 4.5019 3.0080 41 1 -2.4992 5.1976 1.2419 42 1 -0.9142 5.9882 1.4153 43 1 -0.4763 5.6549 -0.9983 44 1 -1.9840 6.5697 -0.7520 45 1 -2.2536 4.7674 -2.4608 46 1 -3.3059 4.5075 -1.0474 47 1 -0.5998 3.1827 -1.5449 48 1 -2.1924 2.3969 -1.6746 49 1 -1.1179 1.9084 0.5133 50 1 -2.6167 2.8453 0.7218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337179853.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:48 Heat of formation + Delta-G solvation = -106.821536 kcal Electronic energy + Delta-G solvation = -30562.419624 eV Core-core repulsion = 26749.922285 eV Total energy + Delta-G solvation = -3812.497339 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.05259 -38.22450 -37.58093 -37.25017 -36.73989 -34.61838 -33.76191 -31.81374 -31.27446 -30.80411 -28.46577 -27.16314 -24.99885 -24.21749 -23.70866 -23.00604 -21.87343 -20.47528 -20.16436 -18.99268 -18.20798 -18.14202 -17.40555 -16.86083 -16.74732 -16.18608 -15.71448 -15.33556 -15.17780 -15.14721 -14.75486 -14.59969 -14.51398 -14.31252 -13.89548 -13.71489 -13.66908 -13.55197 -13.32550 -13.10196 -13.07153 -12.93925 -12.89994 -12.69120 -12.59369 -12.53864 -12.32692 -12.16539 -12.10462 -11.98002 -11.74710 -11.69111 -11.44591 -11.35799 -11.16331 -10.99583 -10.49414 -10.31657 -9.65081 -9.00188 -8.10717 -6.19826 -0.13438 1.38905 1.42302 1.49012 2.16002 2.45198 2.75107 3.05344 3.18993 3.62508 3.81991 4.01337 4.05750 4.11199 4.15496 4.25079 4.36177 4.45018 4.50246 4.53577 4.59190 4.62291 4.68469 4.73687 4.77213 4.80403 4.83464 4.92954 5.00928 5.02663 5.09830 5.16043 5.17865 5.23075 5.29457 5.38089 5.43624 5.44158 5.44965 5.53026 5.65356 5.75310 5.83386 6.05986 6.23660 6.31450 6.36152 6.41602 6.87421 7.46704 8.94440 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010040 B = 0.006477 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.122968 B = 4322.089673 C = 5891.910373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.296 3.704 5 C -0.548 4.548 6 H 0.042 0.958 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.943 3.057 10 H -0.268 1.268 11 H -0.277 1.277 12 H -0.283 1.283 13 S 2.793 3.207 14 O -1.023 7.023 15 O -1.011 7.011 16 N -1.098 6.098 17 C 0.151 3.849 18 H 0.076 0.924 19 C -0.168 4.168 20 C 0.056 3.944 21 N -0.550 5.550 22 C 0.066 3.934 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.124 4.124 26 C 0.053 3.947 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.033 0.967 33 H 0.012 0.988 34 H 0.263 0.737 35 H 0.418 0.582 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.048 0.952 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.082 0.918 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.893 -0.025 12.732 18.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.173 3.827 5 C -0.587 4.587 6 H 0.061 0.939 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.202 1.202 12 H -0.209 1.209 13 S 2.801 3.199 14 O -1.007 7.007 15 O -0.994 6.994 16 N -0.859 5.859 17 C 0.044 3.956 18 H 0.094 0.906 19 C -0.227 4.227 20 C -0.073 4.073 21 N -0.275 5.275 22 C -0.062 4.062 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.162 4.162 26 C -0.075 4.075 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.030 0.970 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.656 -0.292 12.686 17.922 hybrid contribution 0.182 0.507 -1.035 1.167 sum -12.474 0.214 11.651 17.070 Atomic orbital electron populations 1.22327 0.94689 1.03137 1.01970 1.21340 0.95797 0.81784 1.02828 1.57529 1.77077 1.20944 1.27961 1.18364 0.95438 0.87967 0.80977 1.21892 1.08117 1.24703 1.04020 0.93926 1.25554 0.98409 0.94989 0.99161 1.69996 1.34015 1.27636 1.23618 0.85858 0.80253 0.78553 0.78483 1.19261 1.20206 1.20928 1.01274 0.73285 0.72698 0.72603 1.93562 1.53250 1.71918 1.81937 1.93485 1.86541 1.55595 1.63798 1.55521 1.34486 1.21732 1.74195 1.20984 0.83151 0.97186 0.94288 0.90623 1.22293 1.03254 1.02677 0.94475 1.22397 0.97271 0.99246 0.88376 1.61681 1.51507 1.02546 1.11719 1.22025 0.97350 0.90565 0.96213 1.21546 0.99970 0.98546 0.95387 1.21468 0.98991 0.94901 0.99570 1.21615 1.01139 0.97233 0.96169 1.22315 0.95803 0.95672 0.93663 0.91671 0.92557 0.89682 0.91856 0.89368 0.94894 0.97021 0.92794 0.74798 0.89282 0.93008 0.91084 0.91447 0.89017 0.93769 0.90391 0.94091 0.90506 0.93308 0.91067 0.93079 0.91860 0.89976 0.94070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 8.84 71.98 0.64 -3.69 16 2 C 0.11 3.70 6.54 86.38 0.56 4.27 16 3 N -0.99 -40.90 2.89 -519.84 -1.50 -42.40 16 4 C 0.30 14.65 4.65 85.63 0.40 15.04 16 5 C -0.55 -31.39 9.39 25.60 0.24 -31.14 16 6 H 0.04 2.51 7.81 -2.91 -0.02 2.48 16 7 C 0.02 1.07 5.46 84.66 0.46 1.53 16 8 N -0.91 -52.94 13.29 21.45 0.28 -52.65 16 9 Si 0.94 45.66 29.54 68.60 2.03 47.68 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -14.00 7.11 99.48 0.71 -13.29 16 13 S 2.79 112.84 5.93 -56.49 -0.34 112.50 16 14 O -1.02 -51.92 17.71 -128.00 -2.27 -54.19 16 15 O -1.01 -40.82 15.31 -128.00 -1.96 -42.78 16 16 N -1.10 -33.15 5.34 -169.39 -0.90 -34.05 16 17 C 0.15 3.49 2.81 44.99 0.13 3.61 16 18 H 0.08 1.83 4.79 -2.38 -0.01 1.82 16 19 C -0.17 -3.23 9.51 71.98 0.68 -2.55 16 20 C 0.06 1.06 4.60 86.30 0.40 1.45 16 21 N -0.55 -13.26 4.36 -896.36 -3.91 -17.17 16 22 C 0.07 1.42 5.42 86.33 0.47 1.89 16 23 C -0.12 -2.99 6.09 30.64 0.19 -2.81 16 24 C -0.11 -2.90 6.00 30.67 0.18 -2.72 16 25 C -0.12 -3.63 5.87 30.65 0.18 -3.45 16 26 C 0.05 1.29 5.27 86.33 0.46 1.74 16 27 H 0.06 1.50 4.57 -2.39 -0.01 1.49 16 28 H 0.06 1.68 6.08 -2.39 -0.01 1.67 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.09 2.84 6.61 -2.39 -0.02 2.82 16 32 H 0.03 1.66 5.56 -2.39 -0.01 1.64 16 33 H 0.01 0.64 8.01 -2.39 -0.02 0.62 16 34 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 35 H 0.42 11.90 8.81 -96.74 -0.85 11.05 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.05 1.25 7.33 -2.39 -0.02 1.23 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.99 7.98 -2.38 -0.02 0.97 16 40 H 0.09 1.47 7.76 -2.39 -0.02 1.46 16 41 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.08 1.54 7.92 -2.39 -0.02 1.52 16 43 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.05 2.00 6.28 -2.39 -0.02 1.99 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.08 2.04 3.15 -2.39 -0.01 2.03 16 50 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -71.37 386.65 -3.50 -74.87 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.08 Total: 25.02 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 4.98 Total: -16.83 kcal Atomic # 7 Polarization: -140.25 SS G_CDS: -6.03 Total: -146.28 kcal Atomic # 8 Polarization: -92.74 SS G_CDS: -4.23 Total: -96.97 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 112.84 SS G_CDS: -0.34 Total: 112.50 kcal Total: -71.37 -3.50 -74.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337179853.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.949 kcal (2) G-P(sol) polarization free energy of solvation -71.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds