Wall clock time and date at job start Tue Mar 31 2020 17:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46837 * 2 1 4 4 C 1.46492 * 120.00457 * 275.00147 * 3 2 1 5 5 C 1.50707 * 109.47214 * 275.00272 * 4 3 2 6 6 H 1.08001 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47062 * 89.99649 * 9 7 5 11 11 H 1.48497 * 109.46750 * 209.99298 * 9 7 5 12 12 H 1.48495 * 109.47019 * 329.99468 * 9 7 5 13 13 S 1.65602 * 119.99315 * 95.00242 * 3 2 1 14 14 O 1.42097 * 106.40555 * 336.45806 * 13 3 2 15 15 O 1.42107 * 106.40241 * 203.53393 * 13 3 2 16 16 N 1.65601 * 107.21899 * 89.99919 * 13 3 2 17 17 C 1.47087 * 120.88085 * 89.99651 * 16 13 3 18 18 C 1.53243 * 108.51780 * 231.18728 * 17 16 13 19 19 N 1.46895 * 109.34117 * 306.16931 * 18 17 16 20 20 C 1.46902 * 111.00093 * 187.25481 * 19 18 17 21 21 C 1.46896 * 111.26874 * 63.11062 * 19 18 17 22 22 H 1.09002 * 109.49675 * 56.87650 * 21 19 18 23 23 C 1.53002 * 109.49389 * 176.93566 * 21 19 18 24 24 C 1.53006 * 109.47264 * 59.74832 * 23 21 19 25 25 C 1.53004 * 109.47119 * 179.75041 * 23 21 19 26 26 C 1.47075 * 120.88287 * 269.71860 * 16 13 3 27 27 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47266 * 299.99888 * 1 2 3 29 29 H 1.09000 * 109.47274 * 59.99638 * 1 2 3 30 30 H 1.09002 * 109.47058 * 240.00560 * 2 1 3 31 31 H 1.08996 * 109.46805 * 120.00253 * 2 1 3 32 32 H 1.08997 * 109.47338 * 34.99627 * 4 3 2 33 33 H 1.08998 * 109.47358 * 155.00461 * 4 3 2 34 34 H 0.97005 * 119.99748 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.62630 * 350.89809 * 17 16 13 36 36 H 1.08998 * 109.62659 * 111.48125 * 17 16 13 37 37 H 1.08996 * 109.49421 * 66.13575 * 18 17 16 38 38 H 1.09003 * 109.48771 * 186.20942 * 18 17 16 39 39 H 1.09000 * 109.46755 * 53.08105 * 20 19 18 40 40 H 1.09000 * 109.47466 * 173.08168 * 20 19 18 41 41 H 1.09005 * 109.47272 * 293.08388 * 20 19 18 42 42 H 1.08995 * 109.47198 * 299.74792 * 23 21 19 43 43 H 1.09000 * 109.46646 * 66.30996 * 24 23 21 44 44 H 1.08996 * 109.46890 * 186.31035 * 24 23 21 45 45 H 1.08993 * 109.46938 * 306.31046 * 24 23 21 46 46 H 1.08993 * 109.47188 * 59.99808 * 25 23 21 47 47 H 1.09000 * 109.46863 * 179.97438 * 25 23 21 48 48 H 1.09001 * 109.46585 * 299.99628 * 25 23 21 49 49 H 1.08999 * 109.62921 * 248.51982 * 26 16 13 50 50 H 1.09002 * 109.63058 * 9.09995 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4947 1.7890 -1.8823 6 1 4.1723 1.1118 -1.3835 7 6 3.8529 2.3616 -3.0843 8 7 3.0279 3.1866 -3.6913 9 14 5.5093 1.9646 -3.8512 10 1 5.3730 0.7821 -4.7390 11 1 5.9786 3.1283 -4.6453 12 1 6.4928 1.6679 -2.7790 13 16 2.4121 2.1201 1.4288 14 8 1.6868 1.4413 2.4448 15 8 2.3057 3.5186 1.2001 16 7 4.0143 1.8136 1.7138 17 6 5.0573 2.7230 1.2151 18 6 6.1005 1.8969 0.4551 19 7 6.5840 0.8110 1.3182 20 6 7.7071 0.1009 0.6917 21 6 5.5001 -0.1186 1.6628 22 1 5.0553 -0.5134 0.7494 23 6 6.0622 -1.2716 2.4968 24 6 6.6907 -0.7164 3.7765 25 6 4.9317 -2.2363 2.8607 26 6 4.4319 0.6281 2.4776 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8098 -1.9452 33 1 2.0921 3.1803 -1.0754 34 1 3.2801 3.5898 -4.5368 35 1 4.6122 3.4575 0.5440 36 1 5.5327 3.2303 2.0545 37 1 5.6471 1.4744 -0.4416 38 1 6.9364 2.5372 0.1732 39 1 8.4758 0.8185 0.4045 40 1 8.1247 -0.6150 1.3996 41 1 7.3543 -0.4275 -0.1940 42 1 6.8202 -1.8014 1.9200 43 1 5.9124 -0.2848 4.4058 44 1 7.1888 -1.5221 4.3158 45 1 7.4186 0.0531 3.5196 46 1 4.4840 -2.6318 1.9490 47 1 5.3323 -3.0580 3.4544 48 1 4.1737 -1.7065 3.4376 49 1 4.8484 0.9380 3.4360 50 1 3.5732 -0.0230 2.6417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337187044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:33 Heat of formation + Delta-G solvation = -71.157452 kcal Electronic energy + Delta-G solvation = -30672.028000 eV Core-core repulsion = 26861.077171 eV Total energy + Delta-G solvation = -3810.950828 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.44148 -36.72103 -36.02509 -35.27909 -35.18105 -34.09405 -32.75491 -29.96448 -29.63982 -27.75018 -27.06098 -26.62213 -24.23694 -23.56908 -23.17817 -21.77505 -20.99816 -18.94093 -18.31160 -17.23301 -16.89952 -16.38083 -16.00828 -15.45126 -15.05723 -14.78247 -14.58418 -14.48379 -13.98565 -13.94102 -13.61910 -13.28743 -13.06597 -12.93717 -12.72649 -12.41525 -12.11723 -12.01308 -11.96910 -11.91359 -11.82630 -11.68576 -11.59651 -11.39494 -11.33802 -11.10433 -11.01177 -10.98729 -10.88530 -10.65477 -10.53772 -10.49430 -10.39419 -10.28394 -9.97174 -9.76714 -8.71733 -8.53552 -8.09894 -7.93004 -6.15382 -4.21536 1.27212 3.17910 3.24682 3.26936 3.47079 4.03396 4.14629 4.30231 4.75324 4.79674 5.00506 5.06334 5.17685 5.18802 5.28383 5.38786 5.43746 5.50585 5.57192 5.64589 5.66383 5.71779 5.75004 5.78606 5.83747 5.84415 5.92107 5.95222 5.97026 6.07126 6.08618 6.11911 6.19133 6.29973 6.32538 6.41789 6.47408 6.50462 6.64651 6.66115 6.94586 7.26221 7.28271 7.35130 7.44403 7.65316 7.82860 8.12933 8.83089 9.43688 10.92652 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.006979 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.121677 B = 4010.872671 C = 5475.209011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.245 3.755 5 C -0.536 4.536 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.783 3.217 14 O -0.998 6.998 15 O -0.978 6.978 16 N -1.006 6.006 17 C 0.138 3.862 18 C 0.032 3.968 19 N -0.533 5.533 20 C 0.023 3.977 21 C 0.076 3.924 22 H 0.050 0.950 23 C -0.091 4.091 24 C -0.142 4.142 25 C -0.152 4.152 26 C 0.134 3.866 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.264 0.736 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.071 0.929 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.069 0.931 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.060 0.940 49 H 0.075 0.925 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.940 -8.708 10.511 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.575 4.575 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.526 5.526 9 Si 0.715 3.285 10 H -0.208 1.208 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.793 3.207 14 O -0.982 6.982 15 O -0.962 6.962 16 N -0.844 5.844 17 C 0.012 3.988 18 C -0.097 4.097 19 N -0.258 5.258 20 C -0.125 4.125 21 C -0.035 4.035 22 H 0.068 0.932 23 C -0.111 4.111 24 C -0.199 4.199 25 C -0.210 4.210 26 C 0.008 3.992 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.093 0.907 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.478 -7.822 11.319 14.809 hybrid contribution 0.980 -0.829 -1.794 2.205 sum 6.458 -8.651 9.526 14.397 Atomic orbital electron populations 1.22202 0.96924 1.01351 1.02405 1.20942 0.93658 0.83040 1.01822 1.57790 1.78464 1.22788 1.24272 1.19176 0.97261 0.92198 0.79042 1.21574 1.02163 1.27900 1.05913 0.91793 1.24920 0.96984 0.94897 0.96893 1.69927 1.35877 1.29722 1.17038 0.86690 0.84284 0.77974 0.79535 1.20818 1.21092 1.19667 1.01847 0.72569 0.73437 0.72871 1.93522 1.70538 1.76467 1.57706 1.93568 1.85757 1.30843 1.85995 1.58277 1.24794 1.33875 1.67449 1.21356 0.88189 0.91271 0.97935 1.22687 0.97977 0.93501 0.95497 1.61927 1.08251 1.11502 1.44103 1.22390 0.94081 0.98541 0.97523 1.22111 0.91773 0.91903 0.97664 0.93160 1.21200 0.97729 0.95044 0.97100 1.21814 1.01089 1.00753 0.96278 1.21922 0.98475 0.98998 1.01609 1.21617 0.97134 0.85955 0.94476 0.92394 0.92642 0.92076 0.90414 0.92221 0.94494 0.93240 0.92594 0.88292 0.91683 0.91388 0.90452 0.91769 0.91297 0.95786 0.91036 0.92639 0.93670 0.91194 0.92602 0.92575 0.92087 0.90723 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.27 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -20.17 2.82 -115.67 -0.33 -20.49 16 4 C 0.25 5.91 5.44 -5.19 -0.03 5.89 16 5 C -0.54 -13.29 9.16 -34.44 -0.32 -13.61 16 6 H 0.06 1.53 5.65 -52.49 -0.30 1.23 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 9 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 13 S 2.78 56.12 6.07 -107.50 -0.65 55.47 16 14 O -1.00 -20.41 15.88 -57.17 -0.91 -21.32 16 15 O -0.98 -22.86 15.47 -57.17 -0.88 -23.74 16 16 N -1.01 -17.41 3.38 -112.97 -0.38 -17.80 16 17 C 0.14 2.35 6.53 -3.60 -0.02 2.32 16 18 C 0.03 0.52 5.62 -3.70 -0.02 0.50 16 19 N -0.53 -7.45 3.87 -234.29 -0.91 -8.36 16 20 C 0.02 0.28 8.77 60.07 0.53 0.81 16 21 C 0.08 1.03 1.84 -67.35 -0.12 0.90 16 22 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.09 -0.99 2.21 -90.61 -0.20 -1.19 16 24 C -0.14 -1.43 8.41 37.16 0.31 -1.11 16 25 C -0.15 -1.50 8.85 37.16 0.33 -1.17 16 26 C 0.13 1.96 5.07 -3.36 -0.02 1.94 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.08 1.34 8.11 -51.93 -0.42 0.91 16 31 H 0.06 0.92 7.61 -51.93 -0.40 0.53 16 32 H 0.04 0.94 8.11 -51.93 -0.42 0.51 16 33 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 35 H 0.10 1.89 7.22 -51.93 -0.37 1.51 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.30 5.68 -51.93 -0.30 1.01 16 38 H 0.08 1.17 8.03 -51.93 -0.42 0.75 16 39 H 0.06 0.75 8.03 -51.93 -0.42 0.34 16 40 H 0.07 0.72 6.04 -51.93 -0.31 0.41 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.75 6.40 -51.93 -0.33 0.42 16 43 H 0.05 0.56 6.65 -51.93 -0.35 0.22 16 44 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.76 7.08 -51.93 -0.37 0.39 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.61 6.58 -51.93 -0.34 0.27 16 49 H 0.07 1.01 6.32 -51.93 -0.33 0.69 16 50 H 0.08 1.21 5.88 -51.93 -0.31 0.91 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -29.46 387.16 -10.48 -39.95 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -8.67 Total: 2.61 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: 0.70 Total: -3.14 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -0.88 Total: -70.60 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -1.79 Total: -45.06 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 56.12 SS G_CDS: -0.65 Total: 55.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -29.46 -10.48 -39.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337187044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.211 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds