Wall clock time and date at job start Tue Mar 31 2020 17:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.46837 * 2 1 4 4 C 1.46492 * 120.00457 * 275.00147 * 3 2 1 5 5 C 1.50707 * 109.47214 * 275.00272 * 4 3 2 6 6 H 1.08001 * 119.99598 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00222 * 180.02562 * 5 4 3 8 8 N 1.31510 * 119.99785 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99900 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47062 * 89.99649 * 9 7 5 11 11 H 1.48497 * 109.46750 * 209.99298 * 9 7 5 12 12 H 1.48495 * 109.47019 * 329.99468 * 9 7 5 13 13 S 1.65602 * 119.99315 * 95.00242 * 3 2 1 14 14 O 1.42097 * 106.40555 * 336.45806 * 13 3 2 15 15 O 1.42107 * 106.40241 * 203.53393 * 13 3 2 16 16 N 1.65601 * 107.21899 * 89.99919 * 13 3 2 17 17 C 1.47087 * 120.88085 * 89.99651 * 16 13 3 18 18 C 1.53243 * 108.51780 * 231.18728 * 17 16 13 19 19 N 1.46895 * 109.34117 * 306.16931 * 18 17 16 20 20 C 1.46902 * 111.00093 * 187.25481 * 19 18 17 21 21 C 1.46896 * 111.26874 * 63.11062 * 19 18 17 22 22 H 1.09002 * 109.49675 * 56.87650 * 21 19 18 23 23 C 1.53002 * 109.49389 * 176.93566 * 21 19 18 24 24 C 1.53006 * 109.47264 * 59.74832 * 23 21 19 25 25 C 1.53004 * 109.47119 * 179.75041 * 23 21 19 26 26 C 1.47075 * 120.88287 * 269.71860 * 16 13 3 27 27 H 1.08998 * 109.47101 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47266 * 299.99888 * 1 2 3 29 29 H 1.09000 * 109.47274 * 59.99638 * 1 2 3 30 30 H 1.09002 * 109.47058 * 240.00560 * 2 1 3 31 31 H 1.08996 * 109.46805 * 120.00253 * 2 1 3 32 32 H 1.08997 * 109.47338 * 34.99627 * 4 3 2 33 33 H 1.08998 * 109.47358 * 155.00461 * 4 3 2 34 34 H 0.97005 * 119.99748 * 179.97438 * 8 7 5 35 35 H 1.08994 * 109.62630 * 350.89809 * 17 16 13 36 36 H 1.08998 * 109.62659 * 111.48125 * 17 16 13 37 37 H 1.08996 * 109.49421 * 66.13575 * 18 17 16 38 38 H 1.09003 * 109.48771 * 186.20942 * 18 17 16 39 39 H 1.09000 * 109.46755 * 53.08105 * 20 19 18 40 40 H 1.09000 * 109.47466 * 173.08168 * 20 19 18 41 41 H 1.09005 * 109.47272 * 293.08388 * 20 19 18 42 42 H 1.08995 * 109.47198 * 299.74792 * 23 21 19 43 43 H 1.09000 * 109.46646 * 66.30996 * 24 23 21 44 44 H 1.08996 * 109.46890 * 186.31035 * 24 23 21 45 45 H 1.08993 * 109.46938 * 306.31046 * 24 23 21 46 46 H 1.08993 * 109.47188 * 59.99808 * 25 23 21 47 47 H 1.09000 * 109.46863 * 179.97438 * 25 23 21 48 48 H 1.09001 * 109.46585 * 299.99628 * 25 23 21 49 49 H 1.08999 * 109.62921 * 248.51982 * 26 16 13 50 50 H 1.09002 * 109.63058 * 9.09995 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4947 1.7890 -1.8823 6 1 4.1723 1.1118 -1.3835 7 6 3.8529 2.3616 -3.0843 8 7 3.0279 3.1866 -3.6913 9 14 5.5093 1.9646 -3.8512 10 1 5.3730 0.7821 -4.7390 11 1 5.9786 3.1283 -4.6453 12 1 6.4928 1.6679 -2.7790 13 16 2.4121 2.1201 1.4288 14 8 1.6868 1.4413 2.4448 15 8 2.3057 3.5186 1.2001 16 7 4.0143 1.8136 1.7138 17 6 5.0573 2.7230 1.2151 18 6 6.1005 1.8969 0.4551 19 7 6.5840 0.8110 1.3182 20 6 7.7071 0.1009 0.6917 21 6 5.5001 -0.1186 1.6628 22 1 5.0553 -0.5134 0.7494 23 6 6.0622 -1.2716 2.4968 24 6 6.6907 -0.7164 3.7765 25 6 4.9317 -2.2363 2.8607 26 6 4.4319 0.6281 2.4776 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.3617 1.8098 -1.9452 33 1 2.0921 3.1803 -1.0754 34 1 3.2801 3.5898 -4.5368 35 1 4.6122 3.4575 0.5440 36 1 5.5327 3.2303 2.0545 37 1 5.6471 1.4744 -0.4416 38 1 6.9364 2.5372 0.1732 39 1 8.4758 0.8185 0.4045 40 1 8.1247 -0.6150 1.3996 41 1 7.3543 -0.4275 -0.1940 42 1 6.8202 -1.8014 1.9200 43 1 5.9124 -0.2848 4.4058 44 1 7.1888 -1.5221 4.3158 45 1 7.4186 0.0531 3.5196 46 1 4.4840 -2.6318 1.9490 47 1 5.3323 -3.0580 3.4544 48 1 4.1737 -1.7065 3.4376 49 1 4.8484 0.9380 3.4360 50 1 3.5732 -0.0230 2.6417 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337187044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:32 Heat of formation + Delta-G solvation = -90.894029 kcal Electronic energy + Delta-G solvation = -30672.883842 eV Core-core repulsion = 26861.077171 eV Total energy + Delta-G solvation = -3811.806671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.56820 -38.40874 -37.68215 -36.91305 -36.38768 -35.23819 -34.68854 -31.55557 -30.81852 -28.87842 -28.46562 -27.85102 -25.37818 -24.95919 -24.71044 -23.31296 -22.23873 -20.13969 -19.67767 -18.77291 -18.63063 -18.23745 -17.46437 -16.83303 -16.30483 -16.15255 -15.96291 -15.74195 -15.40699 -15.22370 -14.80936 -14.70512 -14.65272 -14.11061 -13.81877 -13.68710 -13.65330 -13.50492 -13.37014 -13.29873 -13.16017 -13.06547 -13.03025 -12.78976 -12.73692 -12.68475 -12.49963 -12.31203 -12.17617 -11.99407 -11.94595 -11.77652 -11.66451 -11.60513 -11.42827 -11.23927 -10.58340 -10.02930 -9.75584 -9.16773 -8.16157 -6.28383 -0.33862 1.38846 1.40336 1.49314 1.93231 2.39985 2.52952 2.95459 3.15993 3.33028 3.64601 3.87437 3.94941 4.00082 4.19654 4.26493 4.34322 4.35688 4.40730 4.44599 4.46980 4.59417 4.66091 4.67634 4.70341 4.77019 4.81706 4.93749 4.94716 4.95360 5.04756 5.08192 5.11565 5.12419 5.17024 5.25221 5.28883 5.31285 5.39148 5.48562 5.52353 5.63364 5.65203 5.78770 5.99062 6.10600 6.13316 6.18002 6.83496 7.40817 8.92291 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009902 B = 0.006979 C = 0.005113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2827.121677 B = 4010.872671 C = 5475.209011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.124 3.876 3 N -0.996 5.996 4 C 0.262 3.738 5 C -0.529 4.529 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.929 5.929 9 Si 0.948 3.052 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.253 1.253 13 S 2.792 3.208 14 O -1.000 7.000 15 O -1.015 7.015 16 N -1.003 6.003 17 C 0.137 3.863 18 C 0.038 3.962 19 N -0.528 5.528 20 C 0.023 3.977 21 C 0.077 3.923 22 H 0.030 0.970 23 C -0.085 4.085 24 C -0.138 4.138 25 C -0.152 4.152 26 C 0.129 3.871 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.018 0.982 33 H 0.015 0.985 34 H 0.264 0.736 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.037 0.963 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.012 0.988 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.019 -11.003 12.015 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.836 5.836 4 C 0.138 3.862 5 C -0.568 4.568 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.569 5.569 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.177 1.177 13 S 2.802 3.198 14 O -0.984 6.984 15 O -0.999 6.999 16 N -0.843 5.843 17 C 0.011 3.989 18 C -0.091 4.091 19 N -0.252 5.252 20 C -0.125 4.125 21 C -0.033 4.033 22 H 0.048 0.952 23 C -0.104 4.104 24 C -0.195 4.195 25 C -0.210 4.210 26 C 0.004 3.996 27 H 0.110 0.890 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.055 0.945 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.031 0.969 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.092 0.908 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.553 -10.153 12.852 18.036 hybrid contribution 0.313 -0.152 -2.182 2.210 sum 7.866 -10.305 10.670 16.790 Atomic orbital electron populations 1.22187 0.95813 1.03282 1.01319 1.21207 0.94689 0.81377 1.02879 1.57704 1.79199 1.23917 1.22827 1.18713 0.96677 0.90646 0.80167 1.21802 1.02218 1.27166 1.05593 0.90779 1.25703 1.00308 0.94804 0.97577 1.70066 1.37942 1.31286 1.17571 0.85719 0.80629 0.77417 0.78923 1.20595 1.21500 1.17692 1.01405 0.73244 0.72517 0.72643 1.93508 1.71192 1.76236 1.57490 1.93516 1.86618 1.33375 1.86439 1.58069 1.23640 1.34983 1.67592 1.21385 0.88087 0.91059 0.98346 1.22550 0.97857 0.94290 0.94441 1.61966 1.08562 1.11389 1.43305 1.22472 0.93435 0.98958 0.97615 1.22134 0.91489 0.92515 0.97168 0.95209 1.21183 0.98172 0.93990 0.97086 1.21776 1.00852 1.01095 0.95795 1.21927 0.98098 0.99260 1.01689 1.21895 0.97817 0.84996 0.94921 0.88962 0.93440 0.93418 0.90404 0.90006 0.96353 0.96708 0.92738 0.91147 0.89495 0.94461 0.89241 0.91025 0.89028 0.96920 0.90226 0.92849 0.91965 0.91888 0.92967 0.90813 0.92407 0.89151 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.15 10.24 71.98 0.74 -4.42 16 2 C 0.12 4.19 6.06 86.38 0.52 4.72 16 3 N -1.00 -41.24 2.82 -519.86 -1.47 -42.70 16 4 C 0.26 13.14 5.44 85.64 0.47 13.61 16 5 C -0.53 -26.72 9.16 25.60 0.23 -26.48 16 6 H 0.07 3.55 5.65 -2.91 -0.02 3.53 16 7 C 0.02 0.81 5.46 84.66 0.46 1.28 16 8 N -0.93 -53.27 13.29 21.45 0.28 -52.99 16 9 Si 0.95 41.09 29.54 68.60 2.03 43.11 16 10 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 H -0.25 -10.10 7.11 99.48 0.71 -9.40 16 13 S 2.79 113.82 6.07 -56.49 -0.34 113.47 16 14 O -1.00 -40.27 15.88 -128.00 -2.03 -42.31 16 15 O -1.02 -49.26 15.47 -128.00 -1.98 -51.24 16 16 N -1.00 -34.16 3.38 -511.31 -1.73 -35.89 16 17 C 0.14 4.60 6.53 86.35 0.56 5.16 16 18 C 0.04 1.19 5.62 86.39 0.49 1.67 16 19 N -0.53 -13.54 3.87 -895.16 -3.47 -17.01 16 20 C 0.02 0.50 8.77 127.69 1.12 1.62 16 21 C 0.08 1.93 1.84 45.15 0.08 2.02 16 22 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 23 C -0.08 -1.56 2.21 -10.79 -0.02 -1.59 16 24 C -0.14 -2.27 8.41 71.98 0.61 -1.67 16 25 C -0.15 -2.53 8.85 71.98 0.64 -1.89 16 26 C 0.13 3.51 5.07 86.51 0.44 3.95 16 27 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.63 8.11 -2.39 -0.02 2.61 16 31 H 0.08 2.39 7.61 -2.39 -0.02 2.38 16 32 H 0.02 0.98 8.11 -2.39 -0.02 0.96 16 33 H 0.01 0.85 6.91 -2.39 -0.02 0.83 16 34 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 35 H 0.07 2.78 7.22 -2.39 -0.02 2.76 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.04 1.40 5.68 -2.39 -0.01 1.39 16 38 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 39 H 0.07 1.46 8.03 -2.39 -0.02 1.44 16 40 H 0.09 1.58 6.04 -2.39 -0.01 1.57 16 41 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 42 H 0.08 1.37 6.40 -2.39 -0.02 1.36 16 43 H 0.05 0.90 6.65 -2.39 -0.02 0.89 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.06 1.14 7.08 -2.39 -0.02 1.13 16 46 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.06 1.00 6.58 -2.39 -0.02 0.98 16 49 H 0.09 2.22 6.32 -2.39 -0.02 2.20 16 50 H 0.09 2.37 5.88 -2.39 -0.01 2.35 16 Total: -1.00 -64.65 387.16 -1.47 -66.12 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.91 Total: 21.45 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 6.33 Total: -2.02 kcal Atomic # 7 Polarization: -142.21 SS G_CDS: -6.38 Total: -148.59 kcal Atomic # 8 Polarization: -89.54 SS G_CDS: -4.01 Total: -93.55 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 16 Polarization: 113.82 SS G_CDS: -0.34 Total: 113.47 kcal Total: -64.65 -1.47 -66.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337187044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.777 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds