Wall clock time and date at job start Tue Mar 31 2020 17:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47572 * 2 1 4 4 C 1.46496 * 119.99680 * 275.00318 * 3 2 1 5 5 C 1.50700 * 109.47319 * 274.99568 * 4 3 2 6 6 H 1.07997 * 119.99564 * 0.02562 * 5 4 3 7 7 C 1.37877 * 120.00231 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99971 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99976 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46935 * 89.99698 * 9 7 5 11 11 H 1.48503 * 109.46913 * 209.99624 * 9 7 5 12 12 H 1.48499 * 109.47204 * 329.99433 * 9 7 5 13 13 S 1.65601 * 120.00119 * 95.00005 * 3 2 1 14 14 O 1.42103 * 106.39886 * 336.46234 * 13 3 2 15 15 O 1.42095 * 106.40145 * 203.54358 * 13 3 2 16 16 N 1.65596 * 107.21751 * 90.00030 * 13 3 2 17 17 C 1.46494 * 120.00265 * 269.99699 * 16 13 3 18 18 C 1.46505 * 119.99655 * 90.00120 * 16 13 3 19 19 C 1.52997 * 109.47212 * 94.99926 * 18 16 13 20 20 C 1.52992 * 109.47482 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47859 * 179.97438 * 20 19 18 22 22 C 1.48533 * 110.99670 * 52.60024 * 21 20 19 23 23 C 1.54936 * 103.22827 * 159.72645 * 22 21 20 24 24 C 1.54602 * 102.91755 * 322.58844 * 23 22 21 25 25 C 1.47895 * 111.00585 * 169.99973 * 21 20 19 26 26 H 1.09008 * 109.46759 * 300.00249 * 1 2 3 27 27 H 1.09002 * 109.47381 * 59.99588 * 1 2 3 28 28 H 1.08998 * 109.47469 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47148 * 240.00064 * 2 1 3 30 30 H 1.09002 * 109.47381 * 120.00412 * 2 1 3 31 31 H 1.09003 * 109.47788 * 34.99983 * 4 3 2 32 32 H 1.09011 * 109.47276 * 154.99662 * 4 3 2 33 33 H 0.96994 * 119.99922 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.47522 * 270.00493 * 17 16 13 35 35 H 1.08998 * 109.46906 * 30.00732 * 17 16 13 36 36 H 1.09003 * 109.46940 * 149.99689 * 17 16 13 37 37 H 1.09002 * 109.47068 * 214.99986 * 18 16 13 38 38 H 1.09001 * 109.47372 * 335.00074 * 18 16 13 39 39 H 1.09002 * 109.47153 * 300.00008 * 19 18 16 40 40 H 1.08998 * 109.47533 * 59.99637 * 19 18 16 41 41 H 1.09002 * 109.47103 * 300.00247 * 20 19 18 42 42 H 1.09001 * 109.47066 * 60.00169 * 20 19 18 43 43 H 1.09002 * 110.67270 * 278.16471 * 22 21 20 44 44 H 1.08998 * 110.66667 * 41.29259 * 22 21 20 45 45 H 1.09002 * 110.72666 * 204.23420 * 23 22 21 46 46 H 1.08998 * 110.72369 * 80.94172 * 23 22 21 47 47 H 1.09001 * 110.30688 * 263.03605 * 24 23 22 48 48 H 1.08996 * 110.30747 * 140.87557 * 24 23 22 49 49 H 1.08994 * 109.91810 * 333.51090 * 25 21 20 50 50 H 1.08999 * 109.91451 * 94.60787 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8824 6 1 4.1720 1.1110 -1.3840 7 6 3.8529 2.3612 -3.0845 8 7 3.0279 3.1861 -3.6916 9 14 5.5093 1.9641 -3.8514 10 1 5.3729 0.7814 -4.7391 11 1 5.9787 3.1278 -4.6457 12 1 6.4929 1.6675 -2.7792 13 16 2.4123 2.1202 1.4287 14 8 1.6869 1.4414 2.4448 15 8 2.3058 3.5185 1.1998 16 7 4.0145 1.8135 1.7137 17 6 4.4090 0.6237 2.4717 18 6 5.0374 2.7323 1.2078 19 6 5.4102 3.7335 2.3029 20 6 6.4788 4.6926 1.7749 21 7 6.8365 5.6544 2.8261 22 6 7.2028 4.9555 4.0845 23 6 8.0242 6.0197 4.8548 24 6 8.8206 6.7217 3.7310 25 6 8.0274 6.4422 2.4410 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.3617 1.8097 -1.9453 32 1 2.0922 3.1803 -1.0756 33 1 3.2797 3.5886 -4.5374 34 1 4.4547 0.8676 3.5331 35 1 3.6772 -0.1681 2.3120 36 1 5.3889 0.2861 2.1340 37 1 5.9221 2.1662 0.9164 38 1 4.6480 3.2687 0.3424 39 1 4.5254 4.2996 2.5942 40 1 5.7995 3.1973 3.1683 41 1 7.3635 4.1262 1.4838 42 1 6.0899 5.2290 0.9093 43 1 6.3098 4.6789 4.6451 44 1 7.8129 4.0774 3.8733 45 1 8.6991 5.5449 5.5670 46 1 7.3643 6.7258 5.3588 47 1 9.8231 6.3000 3.6576 48 1 8.8733 7.7942 3.9179 49 1 8.6409 5.8713 1.7442 50 1 7.7187 7.3808 1.9808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337262876.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:55 Heat of formation + Delta-G solvation = -78.120137 kcal Electronic energy + Delta-G solvation = -28755.996120 eV Core-core repulsion = 24944.743367 eV Total energy + Delta-G solvation = -3811.252753 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.07111 -36.71318 -36.39804 -35.99635 -35.15085 -33.29888 -32.72181 -30.01887 -29.93350 -28.93399 -26.61660 -26.36214 -24.03984 -23.12323 -22.06119 -21.64284 -20.88188 -20.29046 -18.31491 -17.09298 -16.90093 -16.30903 -16.21695 -16.09337 -15.52315 -15.02147 -14.70974 -14.22543 -14.21446 -13.84542 -13.70560 -13.27583 -13.13837 -12.93283 -12.83067 -12.52170 -12.31659 -12.08286 -11.95505 -11.87009 -11.66742 -11.53093 -11.43768 -11.36947 -11.28381 -11.21634 -11.16260 -11.06936 -10.96227 -10.83869 -10.69813 -10.49820 -10.42648 -10.29346 -10.03698 -9.77267 -8.71299 -8.50434 -8.42056 -8.03370 -6.12279 -4.18934 1.29352 3.22092 3.29635 3.30628 3.49237 3.94077 4.15874 4.34249 4.52795 4.57843 4.81254 4.96102 5.05763 5.15447 5.18880 5.22164 5.30679 5.39404 5.43111 5.48862 5.57071 5.62628 5.65684 5.67420 5.70908 5.77285 5.81338 5.84390 5.86880 5.92629 5.93300 6.02575 6.08224 6.12024 6.16730 6.33013 6.48073 6.56722 6.66674 6.68743 6.86671 6.95894 7.05983 7.36629 7.46041 7.66993 7.85281 8.15076 8.86350 9.46946 10.95632 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010402 B = 0.004320 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2691.119410 B = 6480.376265 C = 8363.594812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.130 3.870 3 N -0.993 5.993 4 C 0.245 3.755 5 C -0.539 4.539 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 S 2.783 3.217 14 O -0.999 6.999 15 O -0.973 6.973 16 N -1.006 6.006 17 C 0.101 3.899 18 C 0.130 3.870 19 C -0.138 4.138 20 C 0.049 3.951 21 N -0.517 5.517 22 C 0.032 3.968 23 C -0.125 4.125 24 C -0.131 4.131 25 C 0.034 3.966 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.051 0.949 33 H 0.264 0.736 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.036 0.964 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.074 0.926 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.044 0.956 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.415 -0.995 12.788 15.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.834 5.834 4 C 0.123 3.877 5 C -0.578 4.578 6 H 0.080 0.920 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.792 3.208 14 O -0.983 6.983 15 O -0.957 6.957 16 N -0.844 5.844 17 C -0.045 4.045 18 C 0.004 3.996 19 C -0.178 4.178 20 C -0.080 4.080 21 N -0.241 5.241 22 C -0.095 4.095 23 C -0.163 4.163 24 C -0.169 4.169 25 C -0.094 4.094 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.062 0.938 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.360 -0.046 13.224 15.134 hybrid contribution 1.961 -1.056 -1.091 2.480 sum 9.321 -1.103 12.133 15.339 Atomic orbital electron populations 1.22209 0.96936 1.01373 1.02414 1.20976 0.93685 0.83029 1.01939 1.57801 1.78428 1.22863 1.24307 1.19193 0.97274 0.92249 0.79025 1.21554 1.02256 1.27938 1.06083 0.91967 1.24944 0.97127 0.94840 0.96877 1.69934 1.35944 1.29740 1.17006 0.86611 0.84086 0.77948 0.79417 1.20672 1.21120 1.19841 1.01914 0.72562 0.73486 0.72851 1.93526 1.70553 1.76514 1.57700 1.93579 1.85665 1.30603 1.85882 1.57892 1.25481 1.33269 1.67772 1.21325 1.01282 0.86609 0.95294 1.21209 0.91771 0.90326 0.96286 1.22101 0.99604 0.97005 0.99052 1.22261 0.97506 0.93300 0.94889 1.64803 1.33157 1.22454 1.03699 1.23252 0.98990 0.95585 0.91706 1.22492 0.98430 0.98079 0.97279 1.22394 0.98554 1.01165 0.94776 1.22879 0.90732 0.99020 0.96800 0.92661 0.92045 0.92354 0.90266 0.92136 0.94465 0.93151 0.92590 0.93278 0.91710 0.91549 0.91114 0.88280 0.90365 0.92074 0.94613 0.89700 0.89921 0.93826 0.91310 0.90758 0.91740 0.91113 0.93776 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.16 0.38 -2.34 16 2 C 0.13 2.28 6.06 -4.04 -0.02 2.25 16 3 N -0.99 -20.54 2.83 -115.66 -0.33 -20.87 16 4 C 0.24 6.00 5.43 -5.20 -0.03 5.97 16 5 C -0.54 -13.72 9.38 -34.44 -0.32 -14.05 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -24.95 13.29 55.43 0.74 -24.21 16 9 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 S 2.78 56.46 5.97 -107.50 -0.64 55.81 16 14 O -1.00 -20.69 16.18 -57.17 -0.93 -21.62 16 15 O -0.97 -22.75 15.66 -57.17 -0.90 -23.65 16 16 N -1.01 -17.05 3.24 -121.76 -0.39 -17.45 16 17 C 0.10 1.35 10.33 59.84 0.62 1.97 16 18 C 0.13 2.16 5.37 -4.04 -0.02 2.13 16 19 C -0.14 -2.04 5.20 -26.74 -0.14 -2.18 16 20 C 0.05 0.68 5.03 -3.83 -0.02 0.66 16 21 N -0.52 -6.68 5.40 -230.47 -1.24 -7.93 16 22 C 0.03 0.36 5.10 -1.90 -0.01 0.35 16 23 C -0.12 -1.13 7.06 -24.87 -0.18 -1.30 16 24 C -0.13 -1.16 6.93 -25.37 -0.18 -1.34 16 25 C 0.03 0.37 6.69 -2.76 -0.02 0.35 16 26 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 30 H 0.06 0.94 7.26 -51.93 -0.38 0.56 16 31 H 0.04 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.05 1.37 6.92 -51.92 -0.36 1.01 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.84 7.44 -51.93 -0.39 0.45 16 36 H 0.07 0.75 7.94 -51.93 -0.41 0.34 16 37 H 0.07 1.05 7.96 -51.93 -0.41 0.63 16 38 H 0.10 1.93 7.61 -51.93 -0.40 1.54 16 39 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.06 0.79 6.79 -51.93 -0.35 0.44 16 41 H 0.04 0.46 7.81 -51.93 -0.41 0.05 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.08 0.92 7.67 -51.93 -0.40 0.52 16 44 H 0.04 0.46 8.00 -51.93 -0.42 0.05 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.04 0.47 7.57 -51.93 -0.39 0.08 16 50 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 406.57 15.07 6.13 6.13 Total: -1.00 -30.81 406.57 -11.97 -42.77 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -9.35 Total: 1.71 kcal Atomic # 6 Polarization: -5.86 SS G_CDS: -0.03 Total: -5.89 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -1.23 Total: -70.46 kcal Atomic # 8 Polarization: -43.45 SS G_CDS: -1.82 Total: -45.27 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 56.46 SS G_CDS: -0.64 Total: 55.81 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.81 -11.97 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337262876.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.350 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds